Wall clock time and date at job start Tue Mar 31 2020 11:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35435 * 116.99706 * 2 1 4 4 C 1.39021 * 119.98127 * 0.02562 * 3 2 1 5 5 C 1.37516 * 120.26767 * 180.02562 * 4 3 2 6 6 C 1.40250 * 120.21806 * 0.02562 * 5 4 3 7 7 C 1.46908 * 120.02608 * 180.02562 * 6 5 4 8 8 O 1.21291 * 120.00212 * 180.02562 * 7 6 5 9 9 C 1.39604 * 119.95140 * 359.72502 * 6 5 4 10 10 C 1.39198 * 119.73207 * 0.52400 * 9 6 5 11 11 C 1.47581 * 120.10563 * 179.77448 * 10 9 6 12 12 O 1.21589 * 119.99814 * 236.19870 * 11 10 9 13 13 N 1.34774 * 120.00220 * 56.20293 * 11 10 9 14 14 C 1.46500 * 119.99864 * 5.30085 * 13 11 10 15 15 C 1.50695 * 109.47474 * 270.00444 * 14 13 11 16 16 H 1.08007 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00237 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99980 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48488 * 109.47202 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46492 * 120.00028 * 19 17 15 22 22 H 1.48494 * 109.47366 * 239.99664 * 19 17 15 23 23 C 1.46497 * 119.99987 * 185.30885 * 13 11 10 24 24 C 1.53007 * 109.47048 * 265.28367 * 23 13 11 25 25 C 1.47197 * 109.47125 * 179.97438 * 24 23 13 26 26 N 7.37753 * 139.00131 * 160.48422 * 2 1 3 27 27 H 1.08995 * 109.47482 * 300.00681 * 1 2 3 28 28 H 1.09006 * 109.47303 * 60.00563 * 1 2 3 29 29 H 1.09004 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.86487 * 0.03082 * 4 3 2 31 31 H 1.08003 * 119.89298 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.00374 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.13401 * 180.30303 * 9 6 5 34 34 H 1.09001 * 109.47072 * 30.00894 * 14 13 11 35 35 H 1.09007 * 109.46638 * 150.00078 * 14 13 11 36 36 H 0.96999 * 120.00252 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47392 * 25.28383 * 23 13 11 38 38 H 1.09000 * 109.47434 * 145.28559 * 23 13 11 39 39 H 1.09001 * 109.47037 * 300.00233 * 24 23 13 40 40 H 1.09000 * 109.46847 * 59.99832 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 6 1.2862 2.3724 0.0005 5 6 1.9043 3.6008 0.0000 6 6 3.3042 3.6866 -0.0016 7 6 3.9601 5.0011 -0.0016 8 8 5.1708 5.0748 -0.0035 9 6 4.0739 2.5219 0.0031 10 6 3.4461 1.2796 -0.0017 11 6 4.2518 0.0431 -0.0017 12 8 4.0957 -0.7841 -0.8791 13 7 5.1605 -0.1693 0.9707 14 6 5.2680 0.7693 2.0904 15 6 6.2607 1.8498 1.7467 16 1 6.7618 1.8383 0.7900 17 6 6.5300 2.8525 2.6539 18 7 5.9202 2.8663 3.8191 19 14 7.7610 4.1914 2.2281 20 1 8.3037 3.9503 0.8671 21 1 7.0862 5.5138 2.2644 22 1 8.8712 4.1750 3.2143 23 6 6.0409 -1.3385 0.9079 24 6 5.4313 -2.4803 1.7240 25 6 6.3155 -3.6553 1.6604 26 7 6.9970 -4.5619 1.6169 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.2079 2.3129 0.0015 31 1 1.3099 4.5025 0.0009 32 1 3.3644 5.9020 -0.0008 33 1 5.1521 2.5846 0.0068 34 1 4.2937 1.2187 2.2825 35 1 5.6042 0.2366 2.9800 36 1 6.1094 3.5719 4.4573 37 1 6.1534 -1.6533 -0.1296 38 1 7.0175 -1.0805 1.3173 39 1 5.3187 -2.1655 2.7614 40 1 4.4546 -2.7383 1.3146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864976693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:29 Heat of formation + Delta-G solvation = -46.127542 kcal Electronic energy + Delta-G solvation = -26679.836067 eV Core-core repulsion = 22846.968580 eV Total energy + Delta-G solvation = -3832.867487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40481 -38.83078 -38.60754 -36.72956 -36.48140 -35.16996 -32.95332 -31.78609 -30.44341 -30.19741 -27.52084 -27.26851 -24.69480 -23.93583 -23.21602 -22.42309 -20.62973 -18.93855 -17.80239 -17.48350 -16.85869 -16.49157 -16.37849 -15.88574 -15.55146 -15.14401 -14.79038 -14.57339 -14.47798 -14.18377 -13.91342 -13.76903 -13.39263 -13.22013 -12.84548 -12.58559 -12.37917 -12.30112 -12.20674 -12.13191 -11.73043 -11.60015 -11.40023 -11.10678 -10.94705 -10.84499 -10.69223 -10.60042 -10.10718 -9.75211 -9.49944 -9.17224 -8.66698 -8.56282 -8.02589 -7.89095 -6.21429 -4.27873 1.01175 1.51755 2.71651 2.88537 2.98983 3.29634 3.30827 3.36706 3.42033 3.48325 3.68138 4.14871 4.37357 4.40808 4.61772 4.79687 4.99507 5.06492 5.11841 5.15123 5.25838 5.37983 5.42423 5.44288 5.47892 5.61231 5.72566 5.91063 6.06416 6.19338 6.28252 6.33427 6.41546 6.61114 6.69292 7.03730 7.12764 7.39154 7.46775 7.70451 7.74342 7.88553 7.98153 8.16877 8.71734 8.88206 9.40063 10.84180 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007064 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.610692 B = 3962.548056 C = 6481.679387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.298 6.298 3 C 0.196 3.804 4 C -0.242 4.242 5 C -0.016 4.016 6 C -0.240 4.240 7 C 0.381 3.619 8 O -0.450 6.450 9 C 0.046 3.954 10 C -0.167 4.167 11 C 0.573 3.427 12 O -0.555 6.555 13 N -0.592 5.592 14 C 0.235 3.765 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.077 3.923 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.289 1.289 23 C 0.127 3.873 24 C -0.046 4.046 25 C 0.222 3.778 26 N -0.452 5.452 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.099 0.901 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.094 0.906 33 H 0.172 0.828 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.089 0.911 39 H 0.112 0.888 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 1.256 -4.405 13.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.210 6.210 3 C 0.148 3.852 4 C -0.261 4.261 5 C -0.035 4.035 6 C -0.241 4.241 7 C 0.239 3.761 8 O -0.323 6.323 9 C 0.027 3.973 10 C -0.171 4.171 11 C 0.361 3.639 12 O -0.434 6.434 13 N -0.322 5.322 14 C 0.116 3.884 15 C -0.579 4.579 16 H 0.083 0.917 17 C -0.127 4.127 18 N -0.522 5.522 19 Si 0.722 3.278 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.216 1.216 23 C 0.002 3.998 24 C -0.087 4.087 25 C -0.095 4.095 26 N -0.129 5.129 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.110 0.890 33 H 0.189 0.811 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.130 0.870 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -11.069 -0.594 -4.725 12.050 hybrid contribution -0.150 1.387 0.229 1.413 sum -11.219 0.793 -4.496 12.112 Atomic orbital electron populations 1.23109 0.78518 1.04010 1.01331 1.86117 1.21192 1.26699 1.86980 1.19235 0.90918 0.84399 0.90611 1.20942 0.99806 0.91936 1.13437 1.21144 0.93385 0.97121 0.91850 1.20730 0.94025 0.96523 1.12853 1.23731 0.89824 0.91409 0.71159 1.90557 1.17587 1.89932 1.34188 1.22168 1.02940 0.88589 0.83574 1.19078 0.90142 0.94943 1.12908 1.17939 0.79552 0.85093 0.81352 1.90709 1.68446 1.46223 1.38051 1.48137 1.34356 1.24764 1.24900 1.19527 0.98230 0.87292 0.83356 1.21447 1.24839 1.09162 1.02414 0.91703 1.24833 0.95779 0.97612 0.94501 1.69932 1.41754 1.33594 1.06895 0.86462 0.80694 0.82213 0.78448 1.19396 1.20287 1.21592 1.21129 0.93835 0.84179 1.00704 1.19785 0.96630 0.87666 1.04640 1.29084 0.93664 0.94192 0.92595 1.81127 1.10374 1.11947 1.09483 0.92471 0.92541 0.88255 0.84998 0.85179 0.88993 0.81087 0.94255 0.94193 0.92583 0.89832 0.89268 0.86966 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.80 101.05 0.99 1.23 16 2 O -0.30 -4.58 9.73 -19.07 -0.19 -4.77 16 3 C 0.20 3.18 6.70 -38.47 -0.26 2.92 16 4 C -0.24 -3.12 9.00 -39.55 -0.36 -3.48 16 5 C -0.02 -0.21 9.77 -39.09 -0.38 -0.59 16 6 C -0.24 -3.85 5.86 -105.12 -0.62 -4.46 16 7 C 0.38 5.89 11.44 34.24 0.39 6.28 16 8 O -0.45 -9.10 16.65 5.55 0.09 -9.00 16 9 C 0.05 0.87 7.42 -38.72 -0.29 0.59 16 10 C -0.17 -3.16 4.43 -104.91 -0.46 -3.63 16 11 C 0.57 11.53 6.74 -12.45 -0.08 11.45 16 12 O -0.55 -12.04 16.41 4.21 0.07 -11.97 16 13 N -0.59 -11.36 2.46 -176.27 -0.43 -11.79 16 14 C 0.24 5.11 4.75 -5.20 -0.02 5.09 16 15 C -0.54 -13.05 6.49 -34.44 -0.22 -13.27 16 16 H 0.06 1.61 7.20 -52.48 -0.38 1.23 16 17 C 0.08 1.97 5.46 -17.82 -0.10 1.87 16 18 N -0.88 -23.31 13.29 55.43 0.74 -22.57 16 19 Si 0.89 21.23 29.05 -169.99 -4.94 16.29 16 20 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.13 2.06 5.38 -4.04 -0.02 2.04 16 24 C -0.05 -0.62 6.03 -29.52 -0.18 -0.79 16 25 C 0.22 3.28 15.43 -20.79 -0.32 2.96 16 26 N -0.45 -7.67 18.53 42.11 0.78 -6.89 16 27 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 28 H 0.06 0.45 7.65 -51.93 -0.40 0.06 16 29 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.13 1.25 6.27 -52.49 -0.33 0.92 16 31 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 32 H 0.09 0.97 8.06 -52.48 -0.42 0.54 16 33 H 0.17 3.74 4.79 -52.49 -0.25 3.49 16 34 H 0.04 0.92 6.77 -51.93 -0.35 0.57 16 35 H 0.04 0.89 8.07 -51.92 -0.42 0.47 16 36 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 37 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 38 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 39 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -32.18 354.84 -5.04 -37.22 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -4.58 Total: -0.07 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -1.93 Total: 8.21 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 1.08 Total: -41.25 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.02 Total: -25.74 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.94 Total: 16.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.18 -5.04 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864976693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.906 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds