Wall clock time and date at job start Tue Mar 31 2020 11:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35435 * 116.99706 * 2 1 4 4 C 1.39021 * 119.98127 * 0.02562 * 3 2 1 5 5 C 1.37516 * 120.26767 * 180.02562 * 4 3 2 6 6 C 1.40250 * 120.21806 * 0.02562 * 5 4 3 7 7 C 1.46908 * 120.02608 * 180.02562 * 6 5 4 8 8 O 1.21291 * 120.00212 * 180.02562 * 7 6 5 9 9 C 1.39604 * 119.95140 * 359.72502 * 6 5 4 10 10 C 1.39198 * 119.73207 * 0.52400 * 9 6 5 11 11 C 1.47581 * 120.10563 * 179.77448 * 10 9 6 12 12 O 1.21589 * 119.99814 * 236.19870 * 11 10 9 13 13 N 1.34774 * 120.00220 * 56.20293 * 11 10 9 14 14 C 1.46500 * 119.99864 * 5.30085 * 13 11 10 15 15 C 1.50695 * 109.47474 * 270.00444 * 14 13 11 16 16 H 1.08007 * 119.99911 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00237 * 180.02562 * 15 14 13 18 18 N 1.31523 * 119.99980 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00096 * 179.97438 * 17 15 14 20 20 H 1.48488 * 109.47202 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46492 * 120.00028 * 19 17 15 22 22 H 1.48494 * 109.47366 * 239.99664 * 19 17 15 23 23 C 1.46497 * 119.99987 * 185.30885 * 13 11 10 24 24 C 1.53007 * 109.47048 * 265.28367 * 23 13 11 25 25 C 1.47197 * 109.47125 * 179.97438 * 24 23 13 26 26 N 7.37753 * 139.00131 * 160.48422 * 2 1 3 27 27 H 1.08995 * 109.47482 * 300.00681 * 1 2 3 28 28 H 1.09006 * 109.47303 * 60.00563 * 1 2 3 29 29 H 1.09004 * 109.47308 * 180.02562 * 1 2 3 30 30 H 1.07995 * 119.86487 * 0.03082 * 4 3 2 31 31 H 1.08003 * 119.89298 * 180.02562 * 5 4 3 32 32 H 1.08006 * 120.00374 * 359.97438 * 7 6 5 33 33 H 1.08000 * 120.13401 * 180.30303 * 9 6 5 34 34 H 1.09001 * 109.47072 * 30.00894 * 14 13 11 35 35 H 1.09007 * 109.46638 * 150.00078 * 14 13 11 36 36 H 0.96999 * 120.00252 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47392 * 25.28383 * 23 13 11 38 38 H 1.09000 * 109.47434 * 145.28559 * 23 13 11 39 39 H 1.09001 * 109.47037 * 300.00233 * 24 23 13 40 40 H 1.09000 * 109.46847 * 59.99832 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 6 1.2862 2.3724 0.0005 5 6 1.9043 3.6008 0.0000 6 6 3.3042 3.6866 -0.0016 7 6 3.9601 5.0011 -0.0016 8 8 5.1708 5.0748 -0.0035 9 6 4.0739 2.5219 0.0031 10 6 3.4461 1.2796 -0.0017 11 6 4.2518 0.0431 -0.0017 12 8 4.0957 -0.7841 -0.8791 13 7 5.1605 -0.1693 0.9707 14 6 5.2680 0.7693 2.0904 15 6 6.2607 1.8498 1.7467 16 1 6.7618 1.8383 0.7900 17 6 6.5300 2.8525 2.6539 18 7 5.9202 2.8663 3.8191 19 14 7.7610 4.1914 2.2281 20 1 8.3037 3.9503 0.8671 21 1 7.0862 5.5138 2.2644 22 1 8.8712 4.1750 3.2143 23 6 6.0409 -1.3385 0.9079 24 6 5.4313 -2.4803 1.7240 25 6 6.3155 -3.6553 1.6604 26 7 6.9970 -4.5619 1.6169 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 0.2079 2.3129 0.0015 31 1 1.3099 4.5025 0.0009 32 1 3.3644 5.9020 -0.0008 33 1 5.1521 2.5846 0.0068 34 1 4.2937 1.2187 2.2825 35 1 5.6042 0.2366 2.9800 36 1 6.1094 3.5719 4.4573 37 1 6.1534 -1.6533 -0.1296 38 1 7.0175 -1.0805 1.3173 39 1 5.3187 -2.1655 2.7614 40 1 4.4546 -2.7383 1.3146 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864976693.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:28 Heat of formation + Delta-G solvation = -66.527423 kcal Electronic energy + Delta-G solvation = -26680.720673 eV Core-core repulsion = 22846.968580 eV Total energy + Delta-G solvation = -3833.752093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65624 -40.22167 -39.83360 -37.98610 -37.73856 -36.75752 -34.73510 -33.18022 -31.71516 -31.35962 -29.08118 -28.36314 -26.02814 -25.11244 -24.97410 -23.70476 -21.81804 -20.31044 -18.98257 -18.88106 -18.36651 -18.10095 -17.56740 -17.27439 -16.64228 -16.55064 -16.19121 -15.94942 -15.76196 -15.62101 -15.20131 -15.10444 -14.69594 -14.48248 -14.35182 -14.01204 -13.63448 -13.61211 -13.57745 -13.35970 -13.24175 -12.99250 -12.75987 -12.70900 -12.57982 -12.24546 -11.94548 -11.88575 -11.82736 -11.61056 -10.89303 -10.56797 -10.50429 -9.88242 -9.54173 -9.18407 -8.18556 -6.25571 -0.15049 0.29275 1.35307 1.46947 1.52935 1.53737 1.61952 1.76528 1.92920 2.25098 2.32961 2.45961 2.93829 3.14001 3.16718 3.52039 3.68250 3.93076 4.05192 4.12201 4.19993 4.36423 4.47384 4.48938 4.49398 4.52540 4.71293 4.80162 4.82471 4.91375 4.99602 5.05454 5.22535 5.27639 5.29009 5.48939 5.68448 5.79510 5.83817 6.08460 6.40141 6.51948 6.52892 6.74230 6.82935 7.28522 7.44616 8.86819 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008765 B = 0.007064 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.610692 B = 3962.548056 C = 6481.679387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.326 6.326 3 C 0.192 3.808 4 C -0.232 4.232 5 C 0.008 3.992 6 C -0.261 4.261 7 C 0.384 3.616 8 O -0.509 6.509 9 C 0.020 3.980 10 C -0.204 4.204 11 C 0.570 3.430 12 O -0.578 6.578 13 N -0.592 5.592 14 C 0.256 3.744 15 C -0.528 4.528 16 H 0.048 0.952 17 C 0.049 3.951 18 N -0.907 5.907 19 Si 0.930 3.070 20 H -0.282 1.282 21 H -0.283 1.283 22 H -0.284 1.284 23 C 0.122 3.878 24 C -0.029 4.029 25 C 0.246 3.754 26 N -0.487 5.487 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.177 0.823 31 H 0.187 0.813 32 H 0.158 0.842 33 H 0.132 0.868 34 H 0.026 0.974 35 H 0.038 0.962 36 H 0.265 0.735 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.130 0.870 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.026 2.282 -4.314 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.238 6.238 3 C 0.144 3.856 4 C -0.250 4.250 5 C -0.010 4.010 6 C -0.262 4.262 7 C 0.246 3.754 8 O -0.386 6.386 9 C 0.001 3.999 10 C -0.208 4.208 11 C 0.359 3.641 12 O -0.460 6.460 13 N -0.321 5.321 14 C 0.135 3.865 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.153 4.153 18 N -0.546 5.546 19 Si 0.759 3.241 20 H -0.208 1.208 21 H -0.209 1.209 22 H -0.210 1.210 23 C -0.003 4.003 24 C -0.070 4.070 25 C -0.071 4.071 26 N -0.165 5.165 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.133 0.867 30 H 0.194 0.806 31 H 0.204 0.796 32 H 0.174 0.826 33 H 0.149 0.851 34 H 0.044 0.956 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.372 0.419 -4.634 15.107 hybrid contribution 0.716 1.048 0.087 1.272 sum -13.656 1.467 -4.547 14.468 Atomic orbital electron populations 1.23507 0.75512 1.05847 1.03166 1.86079 1.24337 1.26744 1.86659 1.19413 0.90166 0.86019 0.90029 1.21465 1.01762 0.90623 1.11161 1.21706 0.91840 0.99221 0.88190 1.21051 0.95868 0.95793 1.13510 1.24661 0.89275 0.92974 0.68498 1.90546 1.20295 1.90577 1.37150 1.21855 1.01495 0.90409 0.86097 1.19095 0.91838 0.93971 1.15891 1.18292 0.79480 0.85507 0.80828 1.90669 1.69288 1.47344 1.38709 1.48073 1.34676 1.25095 1.24276 1.19119 0.96612 0.86941 0.83789 1.21508 1.24360 1.09551 1.01266 0.93348 1.25153 0.96786 0.98649 0.94698 1.69962 1.42983 1.34291 1.07395 0.85918 0.79782 0.80926 0.77500 1.20753 1.20870 1.21015 1.21230 0.93709 0.84283 1.01037 1.19664 0.96305 0.85955 1.05093 1.29115 0.92861 0.93731 0.91411 1.81153 1.11413 1.13142 1.10771 0.90548 0.90548 0.86724 0.80574 0.79554 0.82649 0.85087 0.95600 0.94402 0.92549 0.90375 0.89327 0.85230 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.80 113.37 1.11 1.32 16 2 O -0.33 -9.42 9.73 -86.28 -0.84 -10.26 16 3 C 0.19 5.90 6.70 22.99 0.15 6.05 16 4 C -0.23 -4.96 9.00 22.29 0.20 -4.76 16 5 C 0.01 0.17 9.77 22.59 0.22 0.39 16 6 C -0.26 -7.96 5.86 -20.19 -0.12 -8.08 16 7 C 0.38 11.21 11.44 70.09 0.80 12.02 16 8 O -0.51 -20.91 16.65 -3.06 -0.05 -20.96 16 9 C 0.02 0.80 7.42 22.83 0.17 0.97 16 10 C -0.20 -7.84 4.43 -20.05 -0.09 -7.93 16 11 C 0.57 23.63 6.74 86.71 0.58 24.22 16 12 O -0.58 -25.77 16.41 -2.97 -0.05 -25.82 16 13 N -0.59 -23.38 2.46 -829.85 -2.04 -25.42 16 14 C 0.26 11.39 4.75 85.63 0.41 11.80 16 15 C -0.53 -26.43 6.49 25.60 0.17 -26.26 16 16 H 0.05 2.55 7.20 -2.91 -0.02 2.53 16 17 C 0.05 2.54 5.46 84.65 0.46 3.00 16 18 N -0.91 -48.29 13.29 21.45 0.28 -48.01 16 19 Si 0.93 44.72 29.05 68.60 1.99 46.71 16 20 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 C 0.12 4.04 5.38 86.38 0.46 4.51 16 24 C -0.03 -0.76 6.03 28.79 0.17 -0.59 16 25 C 0.25 7.12 15.43 89.45 1.38 8.50 16 26 N -0.49 -16.39 18.53 19.99 0.37 -16.02 16 27 H 0.08 0.90 7.65 -2.39 -0.02 0.88 16 28 H 0.08 0.89 7.65 -2.38 -0.02 0.87 16 29 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.18 2.17 6.27 -2.91 -0.02 2.15 16 31 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 33 H 0.13 6.14 4.79 -2.91 -0.01 6.13 16 34 H 0.03 1.24 6.77 -2.39 -0.02 1.22 16 35 H 0.04 1.70 8.07 -2.38 -0.02 1.68 16 36 H 0.27 13.59 8.31 -92.71 -0.77 12.82 16 37 H 0.08 2.67 7.36 -2.39 -0.02 2.66 16 38 H 0.09 2.92 8.11 -2.39 -0.02 2.90 16 39 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -74.93 354.84 6.84 -68.08 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.08 Total: 6.55 kcal Atomic # 6 Polarization: 19.05 SS G_CDS: 6.09 Total: 25.14 kcal Atomic # 7 Polarization: -88.06 SS G_CDS: -1.38 Total: -89.45 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -0.94 Total: -57.04 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.99 Total: 46.71 kcal Total: -74.93 6.84 -68.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864976693.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.556 kcal (2) G-P(sol) polarization free energy of solvation -74.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds