Wall clock time and date at job start Tue Mar 31 2020 10:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35835 * 117.00360 * 2 1 4 4 C 1.38897 * 119.91510 * 179.97438 * 3 2 1 5 5 C 1.37806 * 120.08597 * 179.97438 * 4 3 2 6 6 C 1.39632 * 119.91740 * 359.97438 * 5 4 3 7 7 C 1.47765 * 120.09216 * 180.02562 * 6 5 4 8 8 C 1.36779 * 126.82328 * 180.02562 * 7 6 5 9 9 C 1.41872 * 103.81362 * 179.97438 * 8 7 6 10 10 C 1.48354 * 126.83623 * 179.97438 * 9 8 7 11 11 O 1.21488 * 119.99959 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00376 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46725 * 35.00314 * 13 12 10 15 15 C 1.52997 * 109.47188 * 275.00479 * 13 12 10 16 16 C 1.50697 * 109.47081 * 155.00043 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 N 1.31097 * 106.32415 * 0.26266 * 9 8 7 25 25 O 1.20875 * 111.77719 * 359.52971 * 24 9 8 26 26 C 1.39629 * 119.82132 * 0.27950 * 6 5 4 27 27 C 1.37823 * 119.91208 * 359.44364 * 26 6 5 28 28 H 1.08999 * 109.46820 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.47232 * 59.99638 * 1 2 3 30 30 H 1.09001 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.95536 * 359.95862 * 4 3 2 32 32 H 1.08005 * 120.04596 * 180.02562 * 5 4 3 33 33 H 1.08003 * 128.09203 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 37 37 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 38 38 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.05058 * 179.69725 * 26 6 5 40 40 H 1.08000 * 119.95857 * 180.24662 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4329 1.2808 0.0005 5 6 4.0622 2.5068 0.0000 6 6 3.3036 3.6790 -0.0016 7 6 3.9745 4.9956 -0.0028 8 6 3.3711 6.2231 -0.0039 9 6 4.4580 7.1349 -0.0040 10 6 4.3764 8.6162 -0.0056 11 8 3.2924 9.1648 -0.0065 12 7 5.5047 9.3533 -0.0051 13 6 5.4242 10.8160 -0.0061 14 1 4.5632 11.1328 0.5824 15 6 5.2719 11.3174 -1.4435 16 6 6.6818 11.3887 0.5952 17 1 7.4631 10.7291 0.9429 18 6 6.8349 12.7549 0.7014 19 7 5.8838 13.5581 0.2776 20 14 8.3941 13.4649 1.4460 21 1 9.3984 13.6853 0.3746 22 1 8.0829 14.7580 2.1064 23 1 8.9404 12.5157 2.4489 24 7 5.5489 6.4078 -0.0088 25 8 5.2995 5.2251 -0.0023 26 6 1.9094 3.6038 0.0032 27 6 1.2874 2.3740 -0.0020 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0190 0.3736 0.0016 32 1 5.1409 2.5609 0.0000 33 1 2.3143 6.4461 -0.0045 34 1 6.3702 8.9152 -0.0040 35 1 6.1330 11.0006 -2.0320 36 1 5.2115 12.4058 -1.4441 37 1 4.3623 10.9031 -1.8784 38 1 5.9913 14.5192 0.3526 39 1 1.3190 4.5082 0.0069 40 1 0.2090 2.3150 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878536150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:17 Heat of formation + Delta-G solvation = 11.697501 kcal Electronic energy + Delta-G solvation = -24557.393764 eV Core-core repulsion = 20727.033759 eV Total energy + Delta-G solvation = -3830.360005 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.93444 -40.52089 -38.85464 -37.98561 -34.94000 -33.92721 -33.00899 -32.26707 -31.56335 -29.55165 -28.93286 -27.67364 -25.30716 -24.65376 -23.80388 -22.70097 -22.11361 -20.75535 -19.42931 -18.78339 -18.17850 -17.71117 -16.89357 -16.49862 -16.20183 -16.06154 -15.31822 -15.24792 -14.66500 -14.42920 -14.25734 -14.11649 -13.80042 -13.63025 -13.27289 -13.13528 -12.53267 -12.45539 -12.38868 -11.80997 -11.76836 -11.51399 -11.24299 -11.12644 -10.98787 -10.81070 -10.39312 -10.26822 -10.25273 -10.02154 -9.48959 -9.48220 -9.08445 -8.59001 -8.23161 -8.02959 -6.14263 -4.23540 0.39723 0.91973 1.49265 1.99469 2.76289 2.83608 3.24930 3.31366 3.34200 3.39694 3.64651 3.73750 4.16069 4.31087 4.34557 4.43418 4.56961 4.68436 4.68613 4.81684 4.96044 5.01573 5.05894 5.14483 5.18295 5.31723 5.50499 5.57998 5.79581 5.86920 5.93928 6.06761 6.21987 6.78203 6.88790 6.91462 7.08861 7.32202 7.48130 7.65700 7.84990 8.07876 8.09981 8.55624 8.70519 8.95085 9.43345 10.91851 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.002142 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.166289 B =13067.212763 C =13532.269478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.138 3.862 4 C -0.150 4.150 5 C -0.053 4.053 6 C -0.055 4.055 7 C 0.004 3.996 8 C -0.171 4.171 9 C -0.009 4.009 10 C 0.580 3.420 11 O -0.537 6.537 12 N -0.687 5.687 13 C 0.263 3.737 14 H 0.053 0.947 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.273 1.273 24 N -0.331 5.331 25 O 0.122 5.878 26 C -0.048 4.048 27 C -0.206 4.206 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.180 0.820 34 H 0.396 0.604 35 H 0.028 0.972 36 H 0.093 0.907 37 H 0.016 0.984 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.196 -26.631 -1.274 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.093 3.907 4 C -0.168 4.168 5 C -0.072 4.072 6 C -0.056 4.056 7 C -0.059 4.059 8 C -0.193 4.193 9 C -0.168 4.168 10 C 0.362 3.638 11 O -0.414 6.414 12 N -0.335 5.335 13 C 0.162 3.838 14 H 0.070 0.930 15 C -0.206 4.206 16 C -0.573 4.573 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 N -0.032 5.032 25 O 0.047 5.953 26 C -0.066 4.066 27 C -0.225 4.225 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.198 0.802 34 H 0.229 0.771 35 H 0.047 0.953 36 H 0.112 0.888 37 H 0.035 0.965 38 H 0.075 0.925 39 H 0.154 0.846 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.624 -25.777 -1.294 27.212 hybrid contribution 0.154 0.413 0.359 0.569 sum -8.470 -25.364 -0.935 26.757 Atomic orbital electron populations 1.23122 0.78003 1.04222 1.01677 1.86069 1.21729 1.26849 1.88194 1.19235 0.92433 0.84248 0.94832 1.20360 0.91279 0.98651 1.06540 1.21123 1.00499 0.90317 0.95236 1.17465 0.92427 0.87941 1.07806 1.22325 0.83399 0.95018 1.05146 1.22579 1.01569 0.89175 1.05933 1.23838 0.89321 0.97963 1.05712 1.16961 0.85747 0.82512 0.78591 1.90751 1.27916 1.71133 1.51584 1.46515 1.06925 1.10080 1.69938 1.18893 0.98607 0.71964 0.94378 0.92961 1.22094 0.96981 1.04507 0.97066 1.21193 1.02551 0.92022 1.41525 0.91918 1.24885 0.96932 0.96740 0.95123 1.69895 1.32560 1.03805 1.45800 0.86402 0.82684 0.78493 0.79279 1.20485 1.21020 1.19804 1.74154 1.23476 0.88936 1.16607 1.84847 1.23674 1.20223 1.66559 1.20938 0.92460 0.97959 0.95269 1.21148 1.00419 0.91708 1.09206 0.92340 0.92347 0.88054 0.84430 0.84088 0.80223 0.77076 0.95269 0.88827 0.96521 0.92500 0.84650 0.84639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 101.05 0.99 1.09 16 2 O -0.32 -2.40 10.49 -19.22 -0.20 -2.60 16 3 C 0.14 1.13 6.69 -39.09 -0.26 0.87 16 4 C -0.15 -1.19 9.97 -39.50 -0.39 -1.59 16 5 C -0.05 -0.46 9.72 -39.22 -0.38 -0.84 16 6 C -0.05 -0.55 5.87 -104.96 -0.62 -1.16 16 7 C 0.00 0.05 7.15 -36.22 -0.26 -0.21 16 8 C -0.17 -2.44 10.33 -38.72 -0.40 -2.84 16 9 C -0.01 -0.17 7.18 -82.63 -0.59 -0.76 16 10 C 0.58 12.62 7.81 -12.10 -0.09 12.52 16 11 O -0.54 -13.12 16.61 5.38 0.09 -13.03 16 12 N -0.69 -15.54 5.07 -55.72 -0.28 -15.82 16 13 C 0.26 6.88 2.56 -69.09 -0.18 6.70 16 14 H 0.05 1.54 7.58 -51.93 -0.39 1.15 16 15 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 16 C -0.53 -14.51 8.73 -34.44 -0.30 -14.81 16 17 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 19 N -0.88 -24.97 11.32 55.43 0.63 -24.34 16 20 Si 0.90 20.94 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 N -0.33 -5.52 11.81 33.35 0.39 -5.13 16 25 O 0.12 1.72 11.01 16.02 0.18 1.89 16 26 C -0.05 -0.40 9.57 -39.21 -0.38 -0.78 16 27 C -0.21 -1.53 9.02 -39.49 -0.36 -1.89 16 28 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 29 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.14 1.01 7.95 -52.48 -0.42 0.59 16 33 H 0.18 2.20 7.46 -52.48 -0.39 1.81 16 34 H 0.40 8.26 8.29 -40.82 -0.34 7.92 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 2.54 6.07 -51.93 -0.32 2.23 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.14 0.97 7.14 -52.49 -0.37 0.59 16 40 H 0.14 0.69 6.28 -52.49 -0.33 0.36 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -32.00 350.76 -6.49 -38.49 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -4.59 Total: 4.73 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.97 Total: -5.38 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.74 Total: -45.29 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.06 Total: -13.74 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.00 -6.49 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.188 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds