Wall clock time and date at job start Tue Mar 31 2020 10:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35835 * 117.00360 * 2 1 4 4 C 1.38897 * 119.91510 * 179.97438 * 3 2 1 5 5 C 1.37806 * 120.08597 * 179.97438 * 4 3 2 6 6 C 1.39632 * 119.91740 * 359.97438 * 5 4 3 7 7 C 1.47765 * 120.09216 * 180.02562 * 6 5 4 8 8 C 1.36779 * 126.82328 * 180.02562 * 7 6 5 9 9 C 1.41872 * 103.81362 * 179.97438 * 8 7 6 10 10 C 1.48354 * 126.83623 * 179.97438 * 9 8 7 11 11 O 1.21488 * 119.99959 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.46497 * 120.00376 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46725 * 35.00314 * 13 12 10 15 15 C 1.52997 * 109.47188 * 275.00479 * 13 12 10 16 16 C 1.50697 * 109.47081 * 155.00043 * 13 12 10 17 17 H 1.07999 * 120.00055 * 0.02562 * 16 13 12 18 18 C 1.37878 * 119.99687 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00458 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99926 * 180.02562 * 18 16 13 21 21 H 1.48503 * 109.46980 * 89.99582 * 20 18 16 22 22 H 1.48493 * 109.47135 * 209.99651 * 20 18 16 23 23 H 1.48498 * 109.47274 * 330.00048 * 20 18 16 24 24 N 1.31097 * 106.32415 * 0.26266 * 9 8 7 25 25 O 1.20875 * 111.77719 * 359.52971 * 24 9 8 26 26 C 1.39629 * 119.82132 * 0.27950 * 6 5 4 27 27 C 1.37823 * 119.91208 * 359.44364 * 26 6 5 28 28 H 1.08999 * 109.46820 * 299.99926 * 1 2 3 29 29 H 1.09006 * 109.47232 * 59.99638 * 1 2 3 30 30 H 1.09001 * 109.46970 * 179.97438 * 1 2 3 31 31 H 1.08007 * 119.95536 * 359.95862 * 4 3 2 32 32 H 1.08005 * 120.04596 * 180.02562 * 5 4 3 33 33 H 1.08003 * 128.09203 * 359.97438 * 8 7 6 34 34 H 0.97006 * 119.99702 * 0.02562 * 12 10 9 35 35 H 1.09002 * 109.47153 * 299.99573 * 15 13 12 36 36 H 1.09001 * 109.46832 * 179.97438 * 15 13 12 37 37 H 1.09004 * 109.47261 * 59.99745 * 15 13 12 38 38 H 0.96999 * 120.00480 * 179.97438 * 19 18 16 39 39 H 1.08001 * 120.05058 * 179.69725 * 26 6 5 40 40 H 1.08000 * 119.95857 * 180.24662 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 3.4329 1.2808 0.0005 5 6 4.0622 2.5068 0.0000 6 6 3.3036 3.6790 -0.0016 7 6 3.9745 4.9956 -0.0028 8 6 3.3711 6.2231 -0.0039 9 6 4.4580 7.1349 -0.0040 10 6 4.3764 8.6162 -0.0056 11 8 3.2924 9.1648 -0.0065 12 7 5.5047 9.3533 -0.0051 13 6 5.4242 10.8160 -0.0061 14 1 4.5632 11.1328 0.5824 15 6 5.2719 11.3174 -1.4435 16 6 6.6818 11.3887 0.5952 17 1 7.4631 10.7291 0.9429 18 6 6.8349 12.7549 0.7014 19 7 5.8838 13.5581 0.2776 20 14 8.3941 13.4649 1.4460 21 1 9.3984 13.6853 0.3746 22 1 8.0829 14.7580 2.1064 23 1 8.9404 12.5157 2.4489 24 7 5.5489 6.4078 -0.0088 25 8 5.2995 5.2251 -0.0023 26 6 1.9094 3.6038 0.0032 27 6 1.2874 2.3740 -0.0020 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0190 0.3736 0.0016 32 1 5.1409 2.5609 0.0000 33 1 2.3143 6.4461 -0.0045 34 1 6.3702 8.9152 -0.0040 35 1 6.1330 11.0006 -2.0320 36 1 5.2115 12.4058 -1.4441 37 1 4.3623 10.9031 -1.8784 38 1 5.9913 14.5192 0.3526 39 1 1.3190 4.5082 0.0069 40 1 0.2090 2.3150 -0.0023 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878536150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:17 Heat of formation + Delta-G solvation = -8.761943 kcal Electronic energy + Delta-G solvation = -24558.280952 eV Core-core repulsion = 20727.033759 eV Total energy + Delta-G solvation = -3831.247193 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.16441 -41.08822 -40.65088 -38.58762 -36.89979 -35.21745 -34.47099 -33.77740 -32.17458 -31.00775 -30.21784 -28.13106 -27.41257 -26.10436 -24.71889 -23.60605 -23.08631 -22.42343 -21.10298 -19.69287 -19.05715 -18.94212 -18.46275 -17.68627 -17.24259 -17.03749 -16.64991 -16.40789 -16.15248 -15.92062 -15.37624 -15.12441 -14.90500 -14.50522 -14.45382 -14.33913 -13.85617 -13.80879 -13.33205 -13.07820 -12.95477 -12.84714 -12.79014 -12.62978 -12.35628 -12.31863 -12.18854 -11.78468 -11.60660 -11.31773 -11.17930 -10.92397 -10.65992 -10.08129 -9.96866 -8.97164 -8.22436 -6.40315 -0.44584 0.17633 0.32974 1.05569 1.43033 1.43788 1.54660 1.76008 2.06288 2.09411 2.33664 2.40775 2.74791 2.89777 3.07743 3.39826 3.73667 3.85976 3.91048 4.06017 4.15703 4.22493 4.37304 4.44553 4.52502 4.62800 4.66830 4.75870 4.79859 4.84806 4.99240 5.01545 5.17441 5.27408 5.30190 5.39913 5.46364 5.58392 5.62680 5.77777 6.00662 6.37188 6.59958 6.65649 6.95655 7.12093 7.33014 8.84075 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.038656 B = 0.002142 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.166289 B =13067.212763 C =13532.269478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.329 6.329 3 C 0.139 3.861 4 C -0.158 4.158 5 C -0.050 4.050 6 C -0.081 4.081 7 C 0.033 3.967 8 C -0.180 4.180 9 C -0.036 4.036 10 C 0.581 3.419 11 O -0.570 6.570 12 N -0.688 5.688 13 C 0.268 3.732 14 H 0.010 0.990 15 C -0.134 4.134 16 C -0.552 4.552 17 H 0.069 0.931 18 C 0.017 3.983 19 N -0.913 5.913 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.267 1.267 24 N -0.344 5.344 25 O 0.139 5.861 26 C -0.046 4.046 27 C -0.207 4.207 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.118 0.882 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.197 0.803 34 H 0.405 0.595 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.016 0.984 38 H 0.268 0.732 39 H 0.147 0.853 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.066 -29.036 -1.074 30.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.069 4.069 6 C -0.082 4.082 7 C -0.031 4.031 8 C -0.203 4.203 9 C -0.192 4.192 10 C 0.365 3.635 11 O -0.450 6.450 12 N -0.336 5.336 13 C 0.166 3.834 14 H 0.027 0.973 15 C -0.193 4.193 16 C -0.590 4.590 17 H 0.087 0.913 18 C -0.183 4.183 19 N -0.551 5.551 20 Si 0.800 3.200 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.192 1.192 24 N -0.042 5.042 25 O 0.060 5.940 26 C -0.065 4.065 27 C -0.225 4.225 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.214 0.786 34 H 0.240 0.760 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.035 0.965 38 H 0.077 0.923 39 H 0.165 0.835 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.485 -28.194 -1.100 29.464 hybrid contribution -0.023 0.905 0.294 0.951 sum -8.508 -27.289 -0.806 28.596 Atomic orbital electron populations 1.23418 0.76157 1.05812 1.02606 1.86064 1.23703 1.26621 1.87828 1.19466 0.92762 0.84793 0.93738 1.20569 0.91667 0.98961 1.06429 1.21273 1.01128 0.90071 0.94381 1.17530 0.93107 0.86891 1.10701 1.22656 0.82269 0.95653 1.02473 1.22730 1.01764 0.88897 1.06897 1.23327 0.91257 0.95920 1.08746 1.17343 0.84766 0.84215 0.77127 1.90716 1.28925 1.72491 1.52831 1.46298 1.07872 1.08875 1.70586 1.18553 0.96835 0.74049 0.93976 0.97261 1.21917 0.97378 1.03133 0.96898 1.21462 1.02864 0.92650 1.42041 0.91323 1.25787 1.00181 0.97027 0.95332 1.70025 1.34433 1.04161 1.46465 0.85295 0.78588 0.77576 0.78581 1.19531 1.20729 1.19164 1.74138 1.23367 0.89717 1.16989 1.84812 1.24689 1.18968 1.65562 1.21145 0.91980 0.98989 0.94372 1.21391 1.01675 0.90959 1.08490 0.91386 0.91371 0.86329 0.82993 0.82988 0.78625 0.76038 0.94227 0.90729 0.96474 0.92265 0.83522 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.19 16 2 O -0.33 -4.18 10.49 -91.70 -0.96 -5.14 16 3 C 0.14 1.92 6.69 22.59 0.15 2.07 16 4 C -0.16 -2.15 9.97 22.33 0.22 -1.93 16 5 C -0.05 -0.75 9.72 22.50 0.22 -0.54 16 6 C -0.08 -1.45 5.87 -20.09 -0.12 -1.57 16 7 C 0.03 0.77 7.15 24.45 0.17 0.94 16 8 C -0.18 -5.06 10.33 22.83 0.24 -4.83 16 9 C -0.04 -1.28 7.18 42.85 0.31 -0.98 16 10 C 0.58 26.05 7.81 86.94 0.68 26.73 16 11 O -0.57 -28.96 16.61 -3.68 -0.06 -29.02 16 12 N -0.69 -32.01 5.07 -448.51 -2.27 -34.28 16 13 C 0.27 14.54 2.56 44.24 0.11 14.65 16 14 H 0.01 0.59 7.58 -2.39 -0.02 0.57 16 15 C -0.13 -7.02 9.26 71.98 0.67 -6.35 16 16 C -0.55 -30.38 8.73 25.60 0.22 -30.15 16 17 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 18 C 0.02 0.95 5.30 84.66 0.45 1.40 16 19 N -0.91 -52.55 11.32 21.45 0.24 -52.31 16 20 Si 0.98 42.84 29.54 68.60 2.03 44.87 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 N -0.34 -11.35 11.81 -48.98 -0.58 -11.93 16 25 O 0.14 3.73 11.01 67.50 0.74 4.47 16 26 C -0.05 -0.68 9.57 22.51 0.22 -0.47 16 27 C -0.21 -2.51 9.02 22.33 0.20 -2.31 16 28 H 0.07 0.24 7.66 -2.39 -0.02 0.22 16 29 H 0.07 0.24 7.65 -2.38 -0.02 0.22 16 30 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 32 H 0.15 1.85 7.95 -2.91 -0.02 1.83 16 33 H 0.20 4.66 7.46 -2.91 -0.02 4.64 16 34 H 0.40 17.19 8.29 -92.70 -0.77 16.42 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 4.18 6.07 -2.39 -0.01 4.16 16 37 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 39 H 0.15 1.77 7.14 -2.91 -0.02 1.75 16 40 H 0.16 1.10 6.28 -2.91 -0.02 1.08 16 Total: -1.00 -70.05 350.76 4.32 -65.73 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.32 Total: 19.75 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 4.85 Total: -2.14 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -2.61 Total: -98.53 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.28 Total: -29.69 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.05 4.32 -65.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878536150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.968 kcal (2) G-P(sol) polarization free energy of solvation -70.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds