Wall clock time and date at job start Tue Mar 31 2020 11:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35961 * 117.00273 * 2 1 4 4 C 1.38263 * 120.12027 * 359.97264 * 3 2 1 5 5 C 1.38765 * 120.68416 * 180.02562 * 4 3 2 6 6 C 1.36634 * 120.48899 * 0.02562 * 5 4 3 7 7 C 1.39780 * 119.81575 * 359.96066 * 6 5 4 8 8 C 1.46256 * 134.15387 * 180.30506 * 7 6 5 9 9 C 1.35804 * 106.08798 * 180.14867 * 8 7 6 10 10 C 1.46995 * 125.13872 * 179.86481 * 9 8 7 11 11 O 1.21653 * 120.00093 * 359.71951 * 10 9 8 12 12 N 1.34768 * 119.99980 * 179.72281 * 10 9 8 13 13 C 1.46503 * 120.00164 * 179.97438 * 12 10 9 14 14 C 1.53950 * 113.74146 * 106.26045 * 13 12 10 15 15 N 1.47805 * 86.03824 * 90.88395 * 14 13 12 16 16 C 1.36942 * 134.45487 * 204.64668 * 15 14 13 17 17 H 1.08002 * 119.99602 * 179.86453 * 16 15 14 18 18 C 1.38807 * 120.00184 * 359.86555 * 16 15 14 19 19 N 1.31617 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46605 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47103 * 119.99755 * 20 18 16 23 23 H 1.48496 * 109.47077 * 240.00020 * 20 18 16 24 24 C 1.47582 * 91.05413 * 24.54887 * 15 14 13 25 25 O 1.34922 * 109.72034 * 359.60049 * 9 8 7 26 26 C 1.34773 * 110.84262 * 0.26518 * 25 9 8 27 27 H 1.08997 * 109.46707 * 60.00691 * 1 2 3 28 28 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47154 * 300.00543 * 1 2 3 30 30 H 1.08004 * 119.65558 * 0.04321 * 4 3 2 31 31 H 1.07997 * 119.75758 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.09071 * 179.97438 * 6 5 4 33 33 H 1.08004 * 126.95408 * 0.02562 * 8 7 6 34 34 H 0.97006 * 120.00313 * 359.97438 * 12 10 9 35 35 H 1.09002 * 112.94232 * 334.66719 * 13 12 10 36 36 H 1.08999 * 113.76704 * 205.15172 * 14 13 12 37 37 H 1.09002 * 113.76463 * 336.53966 * 14 13 12 38 38 H 0.97002 * 120.00155 * 180.02562 * 19 18 16 39 39 H 1.08999 * 113.77186 * 221.15323 * 24 15 14 40 40 H 1.09004 * 113.76624 * 89.74800 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2958 2.3726 -0.0006 5 6 1.9136 3.6151 -0.0011 6 6 3.2765 3.7116 -0.0016 7 6 4.0555 2.5509 -0.0008 8 6 5.4945 2.2897 0.0046 9 6 5.6317 0.9387 -0.0009 10 6 6.9132 0.2184 -0.0012 11 8 7.9596 0.8388 -0.0013 12 7 6.9287 -1.1292 -0.0013 13 6 8.2058 -1.8470 -0.0022 14 6 8.5536 -2.4948 1.3504 15 7 7.8562 -3.6936 0.8393 16 6 7.2252 -4.7586 1.4249 17 1 6.7790 -5.5265 0.8102 18 6 7.1589 -4.8513 2.8082 19 7 7.7022 -3.9152 3.5572 20 14 6.2988 -6.3044 3.6070 21 1 5.7753 -7.2101 2.5529 22 1 7.2639 -7.0429 4.4603 23 1 5.1729 -5.8151 4.4424 24 6 8.1106 -3.2808 -0.5546 25 8 4.4142 0.3573 -0.0003 26 6 3.4388 1.2874 -0.0002 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2174 2.3119 -0.0003 31 1 1.3128 4.5125 -0.0011 32 1 3.7507 4.6820 -0.0025 33 1 6.2875 3.0230 0.0098 34 1 6.0943 -1.6239 -0.0009 35 1 9.0205 -1.2643 -0.4321 36 1 9.6225 -2.6411 1.5055 37 1 8.0591 -2.0268 2.2017 38 1 7.6562 -3.9801 4.5240 39 1 7.2631 -3.4393 -1.2214 40 1 9.0492 -3.6585 -0.9602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030867503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:55 Heat of formation + Delta-G solvation = 25.267868 kcal Electronic energy + Delta-G solvation = -25588.983498 eV Core-core repulsion = 21759.211948 eV Total energy + Delta-G solvation = -3829.771550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.59070 -39.84903 -39.30633 -37.51632 -37.11972 -33.40678 -32.49350 -31.85639 -30.53229 -29.48276 -27.75879 -27.37125 -24.84839 -24.50920 -23.01499 -22.69484 -21.54627 -20.52723 -19.31185 -18.50314 -17.88726 -17.36577 -16.77112 -16.63276 -15.82212 -15.70334 -15.60150 -15.25678 -14.91361 -14.40876 -14.21264 -13.72073 -13.71103 -13.51283 -13.14599 -12.76713 -12.62816 -12.54209 -12.47947 -11.70274 -11.67686 -11.57455 -11.51665 -11.24874 -10.88400 -10.55698 -10.31530 -10.10459 -9.95797 -9.83761 -9.51391 -8.85979 -8.82378 -8.49195 -8.04791 -6.91304 -5.76563 -3.10405 0.48170 1.13036 1.78063 2.39272 2.94664 3.28410 3.37525 3.39823 3.44058 3.46684 3.46951 4.40124 4.44597 4.52215 4.56032 4.76273 4.88739 4.92545 5.03562 5.07921 5.14080 5.19404 5.24864 5.45045 5.47892 5.51951 5.84280 5.88005 6.05883 6.09461 6.19487 6.20298 6.33251 6.33993 6.47377 6.64131 6.73445 7.13157 7.20047 7.30270 7.57992 7.83565 7.97339 8.35324 9.03299 9.70184 10.56622 11.39927 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003693 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.276715 B = 7579.858825 C = 9105.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.145 3.855 4 C -0.190 4.190 5 C -0.099 4.099 6 C -0.102 4.102 7 C -0.101 4.101 8 C -0.131 4.131 9 C 0.000 4.000 10 C 0.595 3.405 11 O -0.524 6.524 12 N -0.674 5.674 13 C 0.086 3.914 14 C 0.151 3.849 15 N -0.611 5.611 16 C -0.226 4.226 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.911 3.089 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.112 3.888 25 O -0.169 6.169 26 C 0.042 3.958 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.057 0.943 30 H 0.140 0.860 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.173 0.827 34 H 0.411 0.589 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.253 0.747 39 H 0.049 0.951 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.474 15.179 -9.271 22.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.100 3.900 4 C -0.209 4.209 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.152 4.152 9 C -0.051 4.051 10 C 0.379 3.621 11 O -0.402 6.402 12 N -0.322 5.322 13 C -0.020 4.020 14 C 0.025 3.975 15 N -0.339 5.339 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.565 5.565 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.015 4.015 25 O -0.070 6.070 26 C -0.006 4.006 27 H 0.075 0.925 28 H 0.121 0.879 29 H 0.076 0.924 30 H 0.158 0.842 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.191 0.809 34 H 0.247 0.753 35 H 0.112 0.888 36 H 0.057 0.943 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.801 14.868 -9.005 21.588 hybrid contribution -1.028 -0.963 0.653 1.553 sum -13.829 13.905 -8.352 21.316 Atomic orbital electron populations 1.23121 0.77908 1.04456 1.01332 1.86218 1.21689 1.25850 1.88484 1.17766 0.86664 0.85759 0.99854 1.20962 0.99937 0.91040 1.08925 1.20509 0.94220 0.96982 0.99964 1.20239 0.93054 0.96810 1.01899 1.19731 0.92841 0.92925 1.04738 1.22661 0.94389 0.94496 1.03627 1.22297 0.84006 0.92680 1.06152 1.16618 0.85090 0.82515 0.77840 1.90855 1.30097 1.67613 1.51667 1.45504 1.10823 1.04864 1.70966 1.23017 0.84838 0.92725 1.01388 1.22752 0.95595 0.85212 0.93910 1.46155 1.62925 1.25153 0.99659 1.19051 1.27396 0.99215 0.89702 0.90170 1.24782 1.00936 0.98609 0.95909 1.69831 1.48764 1.33848 1.04054 0.86070 0.78776 0.81722 0.79320 1.20455 1.21749 1.21723 1.22916 0.98709 0.89927 0.89945 1.84137 1.12785 1.34715 1.75368 1.18849 0.87584 0.87250 1.06965 0.92469 0.87851 0.92402 0.84242 0.84958 0.84985 0.80947 0.75265 0.88783 0.94316 0.90364 0.93660 0.93304 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -4.01 10.50 -19.62 -0.21 -4.21 16 3 C 0.15 1.88 6.70 -39.12 -0.26 1.62 16 4 C -0.19 -1.81 9.03 -39.38 -0.36 -2.17 16 5 C -0.10 -0.86 9.97 -39.97 -0.40 -1.25 16 6 C -0.10 -1.03 10.06 -39.58 -0.40 -1.43 16 7 C -0.10 -1.35 6.38 -105.21 -0.67 -2.02 16 8 C -0.13 -1.85 10.81 -37.23 -0.40 -2.25 16 9 C 0.00 -0.01 7.07 -36.91 -0.26 -0.27 16 10 C 0.60 10.85 7.80 -12.72 -0.10 10.75 16 11 O -0.52 -10.44 16.45 5.23 0.09 -10.35 16 12 N -0.67 -12.59 5.37 -56.55 -0.30 -12.89 16 13 C 0.09 1.68 4.40 -70.14 -0.31 1.37 16 14 C 0.15 3.62 7.33 -2.84 -0.02 3.60 16 15 N -0.61 -15.43 3.70 -177.87 -0.66 -16.09 16 16 C -0.23 -6.29 10.70 -15.06 -0.16 -6.45 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -27.47 11.39 55.49 0.63 -26.84 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C 0.11 2.22 8.68 -2.96 -0.03 2.19 16 25 O -0.17 -2.86 10.28 2.68 0.03 -2.84 16 26 C 0.04 0.64 7.35 -38.24 -0.28 0.36 16 27 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.14 0.91 6.26 -52.48 -0.33 0.58 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.17 2.07 8.06 -52.48 -0.42 1.65 16 34 H 0.41 7.69 8.45 -40.82 -0.35 7.35 16 35 H 0.09 1.72 7.51 -51.93 -0.39 1.33 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 38 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 347.73 15.07 5.24 5.24 Total: -1.00 -33.84 347.73 -7.69 -41.53 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.74 Total: 4.21 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.75 Total: 4.99 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.33 Total: -55.82 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.09 Total: -17.40 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.84 -7.69 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030867503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.801 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds