Wall clock time and date at job start Tue Mar 31 2020 11:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35961 * 117.00273 * 2 1 4 4 C 1.38263 * 120.12027 * 359.97264 * 3 2 1 5 5 C 1.38765 * 120.68416 * 180.02562 * 4 3 2 6 6 C 1.36634 * 120.48899 * 0.02562 * 5 4 3 7 7 C 1.39780 * 119.81575 * 359.96066 * 6 5 4 8 8 C 1.46256 * 134.15387 * 180.30506 * 7 6 5 9 9 C 1.35804 * 106.08798 * 180.14867 * 8 7 6 10 10 C 1.46995 * 125.13872 * 179.86481 * 9 8 7 11 11 O 1.21653 * 120.00093 * 359.71951 * 10 9 8 12 12 N 1.34768 * 119.99980 * 179.72281 * 10 9 8 13 13 C 1.46503 * 120.00164 * 179.97438 * 12 10 9 14 14 C 1.53950 * 113.74146 * 106.26045 * 13 12 10 15 15 N 1.47805 * 86.03824 * 90.88395 * 14 13 12 16 16 C 1.36942 * 134.45487 * 204.64668 * 15 14 13 17 17 H 1.08002 * 119.99602 * 179.86453 * 16 15 14 18 18 C 1.38807 * 120.00184 * 359.86555 * 16 15 14 19 19 N 1.31617 * 119.99858 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00250 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46605 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47103 * 119.99755 * 20 18 16 23 23 H 1.48496 * 109.47077 * 240.00020 * 20 18 16 24 24 C 1.47582 * 91.05413 * 24.54887 * 15 14 13 25 25 O 1.34922 * 109.72034 * 359.60049 * 9 8 7 26 26 C 1.34773 * 110.84262 * 0.26518 * 25 9 8 27 27 H 1.08997 * 109.46707 * 60.00691 * 1 2 3 28 28 H 1.09003 * 109.46832 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47154 * 300.00543 * 1 2 3 30 30 H 1.08004 * 119.65558 * 0.04321 * 4 3 2 31 31 H 1.07997 * 119.75758 * 180.02562 * 5 4 3 32 32 H 1.08004 * 120.09071 * 179.97438 * 6 5 4 33 33 H 1.08004 * 126.95408 * 0.02562 * 8 7 6 34 34 H 0.97006 * 120.00313 * 359.97438 * 12 10 9 35 35 H 1.09002 * 112.94232 * 334.66719 * 13 12 10 36 36 H 1.08999 * 113.76704 * 205.15172 * 14 13 12 37 37 H 1.09002 * 113.76463 * 336.53966 * 14 13 12 38 38 H 0.97002 * 120.00155 * 180.02562 * 19 18 16 39 39 H 1.08999 * 113.77186 * 221.15323 * 24 15 14 40 40 H 1.09004 * 113.76624 * 89.74800 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2958 2.3726 -0.0006 5 6 1.9136 3.6151 -0.0011 6 6 3.2765 3.7116 -0.0016 7 6 4.0555 2.5509 -0.0008 8 6 5.4945 2.2897 0.0046 9 6 5.6317 0.9387 -0.0009 10 6 6.9132 0.2184 -0.0012 11 8 7.9596 0.8388 -0.0013 12 7 6.9287 -1.1292 -0.0013 13 6 8.2058 -1.8470 -0.0022 14 6 8.5536 -2.4948 1.3504 15 7 7.8562 -3.6936 0.8393 16 6 7.2252 -4.7586 1.4249 17 1 6.7790 -5.5265 0.8102 18 6 7.1589 -4.8513 2.8082 19 7 7.7022 -3.9152 3.5572 20 14 6.2988 -6.3044 3.6070 21 1 5.7753 -7.2101 2.5529 22 1 7.2639 -7.0429 4.4603 23 1 5.1729 -5.8151 4.4424 24 6 8.1106 -3.2808 -0.5546 25 8 4.4142 0.3573 -0.0003 26 6 3.4388 1.2874 -0.0002 27 1 -0.3632 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2174 2.3119 -0.0003 31 1 1.3128 4.5125 -0.0011 32 1 3.7507 4.6820 -0.0025 33 1 6.2875 3.0230 0.0098 34 1 6.0943 -1.6239 -0.0009 35 1 9.0205 -1.2643 -0.4321 36 1 9.6225 -2.6411 1.5055 37 1 8.0591 -2.0268 2.2017 38 1 7.6562 -3.9801 4.5240 39 1 7.2631 -3.4393 -1.2214 40 1 9.0492 -3.6585 -0.9602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030867503.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:50:55 Heat of formation + Delta-G solvation = 1.591914 kcal Electronic energy + Delta-G solvation = -25590.010164 eV Core-core repulsion = 21759.211948 eV Total energy + Delta-G solvation = -3830.798217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.63713 -41.09507 -40.44408 -39.18571 -37.96959 -35.09899 -33.79206 -33.53848 -31.43932 -30.47874 -29.48335 -28.22845 -26.63388 -25.91144 -24.42999 -23.86068 -22.51600 -21.80817 -21.02781 -19.61831 -18.92230 -18.74823 -18.30992 -17.70768 -17.23088 -16.95775 -16.62442 -16.52349 -16.04039 -15.81066 -15.75679 -15.41006 -14.91773 -14.58397 -14.46436 -14.30326 -14.04978 -13.44037 -13.31732 -13.24426 -13.22082 -12.85469 -12.48857 -12.39156 -12.26275 -12.24791 -12.18197 -11.75395 -11.59404 -11.43314 -10.94549 -10.94044 -10.16928 -9.72714 -8.96422 -8.93220 -7.91238 -5.25644 -0.54788 0.27103 0.72172 1.31819 1.43767 1.44811 1.54976 1.93281 2.03342 2.21797 2.45388 2.62214 3.23474 3.27957 3.37963 3.64736 3.79380 3.82554 3.91738 4.05000 4.25125 4.28785 4.37462 4.39859 4.41341 4.51073 4.57049 4.73330 4.75611 4.82821 4.95902 5.00861 5.06315 5.22022 5.24554 5.40597 5.42862 5.50573 5.63216 5.74208 5.89721 6.30182 6.40226 6.87894 6.89056 7.59199 8.52259 9.25327 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012810 B = 0.003693 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.276715 B = 7579.858825 C = 9105.493632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.345 6.345 3 C 0.117 3.883 4 C -0.170 4.170 5 C -0.089 4.089 6 C -0.099 4.099 7 C -0.118 4.118 8 C -0.109 4.109 9 C -0.039 4.039 10 C 0.599 3.401 11 O -0.546 6.546 12 N -0.678 5.678 13 C 0.109 3.891 14 C 0.146 3.854 15 N -0.637 5.637 16 C -0.231 4.231 17 H 0.088 0.912 18 C -0.068 4.068 19 N -0.954 5.954 20 Si 0.977 3.023 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.295 1.295 24 C 0.120 3.880 25 O -0.196 6.196 26 C 0.007 3.993 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.175 0.825 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.191 0.809 34 H 0.410 0.590 35 H 0.113 0.887 36 H 0.033 0.967 37 H 0.038 0.962 38 H 0.246 0.754 39 H 0.066 0.934 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 16.976 -10.588 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.259 6.259 3 C 0.071 3.929 4 C -0.189 4.189 5 C -0.106 4.106 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.129 4.129 9 C -0.089 4.089 10 C 0.386 3.614 11 O -0.426 6.426 12 N -0.325 5.325 13 C 0.003 3.997 14 C 0.020 3.980 15 N -0.365 5.365 16 C -0.359 4.359 17 H 0.105 0.895 18 C -0.260 4.260 19 N -0.603 5.603 20 Si 0.805 3.195 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.223 1.223 24 C -0.005 4.005 25 O -0.098 6.098 26 C -0.041 4.041 27 H 0.096 0.904 28 H 0.129 0.871 29 H 0.092 0.908 30 H 0.192 0.808 31 H 0.194 0.806 32 H 0.180 0.820 33 H 0.208 0.792 34 H 0.245 0.755 35 H 0.131 0.869 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.241 16.670 -10.372 24.855 hybrid contribution -0.444 -1.374 1.006 1.760 sum -15.685 15.296 -9.366 23.827 Atomic orbital electron populations 1.23437 0.75497 1.05723 1.03065 1.86165 1.24358 1.26552 1.88858 1.18149 0.86237 0.86970 1.01502 1.21494 1.01516 0.90160 1.05703 1.21073 0.93975 0.98137 0.97457 1.20705 0.93733 0.96841 1.00433 1.19979 0.92285 0.93617 1.06009 1.23012 0.95675 0.93793 1.00422 1.21950 0.83544 0.93316 1.10104 1.16802 0.85764 0.82131 0.76714 1.90818 1.31174 1.67908 1.52736 1.45494 1.10329 1.05260 1.71458 1.22718 0.85747 0.93092 0.98128 1.22672 0.94694 0.85761 0.94888 1.46436 1.63024 1.24777 1.02273 1.19466 1.26715 0.99596 0.90139 0.89452 1.25619 1.02427 1.01331 0.96667 1.70036 1.50787 1.35837 1.03664 0.85029 0.77277 0.78796 0.78354 1.18629 1.22028 1.22266 1.23085 1.00329 0.89297 0.87803 1.84057 1.13232 1.35952 1.76592 1.19519 0.88456 0.87760 1.08332 0.90354 0.87090 0.90824 0.80796 0.80573 0.81995 0.79162 0.75494 0.86904 0.94910 0.94308 0.94473 0.91576 0.90764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.91 10.50 -93.11 -0.98 -9.89 16 3 C 0.12 2.93 6.70 22.57 0.15 3.09 16 4 C -0.17 -2.67 9.03 22.40 0.20 -2.46 16 5 C -0.09 -1.13 9.97 22.02 0.22 -0.91 16 6 C -0.10 -1.67 10.06 22.27 0.22 -1.45 16 7 C -0.12 -3.02 6.38 -20.24 -0.13 -3.15 16 8 C -0.11 -3.06 10.81 23.79 0.26 -2.80 16 9 C -0.04 -1.34 7.07 24.00 0.17 -1.17 16 10 C 0.60 22.70 7.80 86.54 0.67 23.37 16 11 O -0.55 -22.25 16.45 -4.20 -0.07 -22.32 16 12 N -0.68 -26.25 5.37 -451.06 -2.42 -28.68 16 13 C 0.11 4.31 4.40 46.75 0.21 4.51 16 14 C 0.15 7.28 7.33 86.44 0.63 7.91 16 15 N -0.64 -32.67 3.70 -716.67 -2.65 -35.32 16 16 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 17 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 19 N -0.95 -59.37 11.39 21.65 0.25 -59.12 16 20 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 23 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 24 C 0.12 4.67 8.68 86.49 0.75 5.42 16 25 O -0.20 -7.02 10.28 -13.32 -0.14 -7.16 16 26 C 0.01 0.22 7.35 23.14 0.17 0.39 16 27 H 0.08 0.68 7.66 -2.39 -0.02 0.67 16 28 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 0.72 7.66 -2.39 -0.02 0.71 16 30 H 0.17 1.42 6.26 -2.91 -0.02 1.41 16 31 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 32 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.19 4.42 8.06 -2.91 -0.02 4.40 16 34 H 0.41 16.10 8.45 -92.70 -0.78 15.31 16 35 H 0.11 4.08 7.51 -2.39 -0.02 4.06 16 36 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.04 2.22 7.16 -2.39 -0.02 2.20 16 38 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 39 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -77.52 347.73 2.33 -75.20 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.31 Total: 20.04 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 6.01 Total: 18.52 kcal Atomic # 7 Polarization: -118.29 SS G_CDS: -4.83 Total: -123.12 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -1.18 Total: -39.37 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -77.52 2.33 -75.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030867503.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.789 kcal (2) G-P(sol) polarization free energy of solvation -77.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds