Wall clock time and date at job start Tue Mar 31 2020 12:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99957 * 2 1 4 4 C 1.52996 * 109.47163 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47075 * 65.64797 * 4 3 2 6 6 C 1.36804 * 120.00005 * 264.12390 * 5 4 3 7 7 H 1.07997 * 120.00211 * 132.53497 * 6 5 4 8 8 C 1.39086 * 119.99902 * 312.53031 * 6 5 4 9 9 N 1.31335 * 120.00058 * 170.37717 * 8 6 5 10 10 Si 1.86801 * 119.99811 * 350.38054 * 8 6 5 11 11 H 1.48507 * 109.47195 * 91.62157 * 10 8 6 12 12 H 1.48492 * 109.47097 * 211.61769 * 10 8 6 13 13 H 1.48500 * 109.47522 * 331.62108 * 10 8 6 14 14 C 1.34781 * 120.00212 * 84.39802 * 5 4 3 15 15 O 1.21603 * 119.99571 * 4.75952 * 14 5 4 16 16 C 1.47767 * 119.99974 * 184.76433 * 14 5 4 17 17 C 1.38394 * 119.24826 * 184.84650 * 16 14 5 18 18 C 1.40653 * 118.64065 * 179.97438 * 17 16 14 19 19 C 1.40256 * 122.04359 * 179.97438 * 18 17 16 20 20 C 1.36313 * 119.47750 * 180.02562 * 19 18 17 21 21 C 1.39246 * 120.94666 * 0.02562 * 20 19 18 22 22 C 1.36385 * 121.05821 * 359.97438 * 21 20 19 23 23 C 1.40023 * 119.59371 * 0.02562 * 22 21 20 24 24 C 1.41359 * 121.84336 * 179.97438 * 23 22 21 25 25 O 1.35491 * 119.94573 * 0.05185 * 24 23 22 26 26 N 1.31383 * 120.10993 * 179.76450 * 24 23 22 27 27 H 1.09003 * 109.47181 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47486 * 300.00157 * 1 2 3 29 29 H 1.08997 * 109.47579 * 60.00237 * 1 2 3 30 30 H 1.09005 * 109.46940 * 59.99444 * 3 2 1 31 31 H 1.09001 * 109.47035 * 299.99909 * 3 2 1 32 32 H 1.08996 * 109.47349 * 305.64567 * 4 3 2 33 33 H 1.09000 * 109.47040 * 185.64196 * 4 3 2 34 34 H 0.96996 * 120.00147 * 180.02562 * 9 8 6 35 35 H 1.07993 * 120.67748 * 359.94825 * 17 16 14 36 36 H 1.08001 * 120.26329 * 0.03818 * 19 18 17 37 37 H 1.08010 * 119.52776 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.47371 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.19822 * 179.97438 * 22 21 20 40 40 H 0.96700 * 114.00487 * 89.99947 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9777 0.5782 -1.2574 6 6 4.2146 -0.7677 -1.3218 7 1 3.8086 -1.3491 -2.1363 8 6 4.9784 -1.3872 -0.3383 9 7 5.0504 -2.6977 -0.2910 10 14 5.9018 -0.3552 0.9154 11 1 5.0460 -0.1454 2.1108 12 1 7.1467 -1.0590 1.3154 13 1 6.2469 0.9594 0.3169 14 6 4.1567 1.3469 -2.3499 15 8 4.0352 2.5542 -2.2703 16 6 4.5003 0.7226 -3.6444 17 6 4.7797 1.5313 -4.7322 18 6 5.1058 0.9236 -5.9580 19 6 5.4007 1.6742 -7.1055 20 6 5.7097 1.0307 -8.2668 21 6 5.7360 -0.3601 -8.3297 22 6 5.4543 -1.1195 -7.2325 23 6 5.1326 -0.4932 -6.0221 24 6 4.8322 -1.2337 -4.8560 25 8 4.8521 -2.5880 -4.8910 26 7 4.5393 -0.6108 -3.7369 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8500 0.5592 0.8360 33 1 3.9783 2.1755 0.1017 34 1 5.5828 -3.1297 0.3951 35 1 4.7475 2.6070 -4.6417 36 1 5.3834 2.7534 -7.0693 37 1 5.9365 1.6079 -9.1511 38 1 5.9843 -0.8452 -9.2621 39 1 5.4784 -2.1973 -7.2970 40 1 5.7122 -2.9745 -4.6767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160823626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:38 Heat of formation + Delta-G solvation = -52.772277 kcal Electronic energy + Delta-G solvation = -26721.268978 eV Core-core repulsion = 22888.113354 eV Total energy + Delta-G solvation = -3833.155625 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.01962 -40.64880 -38.76814 -38.68636 -37.38776 -36.75662 -33.88409 -33.18056 -32.28258 -31.18450 -30.15149 -27.30184 -26.87275 -25.46306 -24.86421 -23.83600 -23.01384 -21.42685 -20.07401 -19.01293 -18.63874 -18.53454 -17.60830 -17.42929 -16.96097 -16.74519 -16.36960 -16.27116 -15.99640 -15.74445 -15.47404 -15.13640 -14.81485 -14.58906 -14.44033 -14.22566 -13.92288 -13.58355 -13.34916 -13.12101 -12.84387 -12.75890 -12.67490 -12.56700 -12.37040 -12.07341 -11.95326 -11.75346 -11.17540 -11.00078 -10.88890 -10.56764 -10.10112 -10.02200 -9.36089 -8.92560 -8.22872 -5.93006 -0.74693 -0.17772 0.88592 1.18486 1.27638 1.37422 1.55819 2.25133 2.41498 2.44842 2.70647 2.91737 3.06777 3.20663 3.64299 3.68098 3.84088 3.96529 4.05749 4.11514 4.19003 4.32888 4.35354 4.38091 4.47690 4.52082 4.54444 4.56466 4.73018 4.76032 4.80975 4.82436 5.06586 5.09992 5.47339 5.48225 5.53359 5.56623 5.94541 6.19984 6.34720 6.60775 6.69794 6.94472 7.19030 7.45442 7.73090 8.85289 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.004831 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.616693 B = 5794.882733 C = 6295.289532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.086 3.914 5 N -0.445 5.445 6 C -0.284 4.284 7 H 0.116 0.884 8 C 0.022 3.978 9 N -0.904 5.904 10 Si 0.914 3.086 11 H -0.258 1.258 12 H -0.288 1.288 13 H -0.272 1.272 14 C 0.512 3.488 15 O -0.611 6.611 16 C 0.072 3.928 17 C -0.110 4.110 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.090 4.090 21 C -0.107 4.107 22 C -0.094 4.094 23 C -0.123 4.123 24 C 0.323 3.677 25 O -0.481 6.481 26 N -0.466 5.466 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.271 0.729 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.455 5.698 -13.240 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.015 4.015 4 C -0.036 4.036 5 N -0.162 5.162 6 C -0.414 4.414 7 H 0.133 0.867 8 C -0.179 4.179 9 N -0.544 5.544 10 Si 0.741 3.259 11 H -0.184 1.184 12 H -0.215 1.215 13 H -0.197 1.197 14 C 0.303 3.697 15 O -0.498 6.498 16 C -0.053 4.053 17 C -0.132 4.132 18 C -0.045 4.045 19 C -0.130 4.130 20 C -0.109 4.109 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.126 4.126 24 C 0.129 3.871 25 O -0.290 6.290 26 N -0.186 5.186 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.081 0.919 35 H 0.173 0.827 36 H 0.173 0.827 37 H 0.185 0.815 38 H 0.182 0.818 39 H 0.166 0.834 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -0.221 5.579 -12.378 13.579 hybrid contribution 0.814 0.414 0.798 1.213 sum 0.594 5.993 -11.580 13.052 Atomic orbital electron populations 1.22873 0.80274 1.03256 1.00493 1.88119 1.20845 1.27745 1.95384 1.22788 0.92836 0.85040 1.00856 1.22000 0.94531 0.99114 0.87976 1.43731 1.56069 1.08213 1.08230 1.19684 1.29287 0.80972 1.11424 0.86667 1.25918 0.97098 0.96003 0.98889 1.69708 1.40516 1.09084 1.35092 0.86338 0.79014 0.79649 0.80917 1.18357 1.21471 1.19652 1.18453 0.80694 0.85497 0.85057 1.90584 1.58954 1.13971 1.86308 1.20541 1.01974 0.88297 0.94538 1.22247 0.98085 1.01552 0.91306 1.18266 0.99186 0.92336 0.94685 1.21286 0.99521 1.01052 0.91167 1.21461 0.96126 0.94967 0.98346 1.21436 0.97734 0.94161 0.99154 1.21187 0.97799 1.01541 0.90792 1.19314 1.03450 0.93699 0.96184 1.19906 0.94235 0.85169 0.87825 1.84618 1.39774 1.13854 1.90798 1.68008 1.13096 1.10636 1.26887 0.89362 0.92175 0.94250 0.89789 0.94024 0.91060 0.89020 0.91897 0.82732 0.82742 0.81510 0.81802 0.83367 0.72441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.11 16 2 O -0.40 -17.50 10.48 -148.98 -1.56 -19.07 16 3 C 0.06 2.48 6.24 71.98 0.45 2.93 16 4 C 0.09 3.95 4.22 86.38 0.36 4.32 16 5 N -0.44 -23.25 2.02 -638.92 -1.29 -24.54 16 6 C -0.28 -16.22 7.99 84.12 0.67 -15.55 16 7 H 0.12 7.26 5.82 -2.91 -0.02 7.24 16 8 C 0.02 1.26 5.41 84.97 0.46 1.72 16 9 N -0.90 -53.61 13.95 21.69 0.30 -53.30 16 10 Si 0.91 44.58 24.83 68.60 1.70 46.29 16 11 H -0.26 -11.76 6.75 99.48 0.67 -11.09 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.27 -13.39 7.07 99.48 0.70 -12.69 16 14 C 0.51 26.18 7.56 86.76 0.66 26.83 16 15 O -0.61 -31.14 15.92 -4.04 -0.06 -31.20 16 16 C 0.07 3.36 6.64 41.42 0.27 3.63 16 17 C -0.11 -4.18 9.41 22.90 0.22 -3.97 16 18 C -0.04 -1.26 5.74 -21.31 -0.12 -1.38 16 19 C -0.11 -2.44 9.81 22.31 0.22 -2.22 16 20 C -0.09 -1.43 9.95 22.06 0.22 -1.21 16 21 C -0.11 -1.76 9.95 22.08 0.22 -1.54 16 22 C -0.09 -2.16 9.58 22.27 0.21 -1.95 16 23 C -0.12 -3.95 5.76 -21.18 -0.12 -4.07 16 24 C 0.32 12.84 7.80 85.53 0.67 13.51 16 25 O -0.48 -17.23 12.82 -87.92 -1.13 -18.36 16 26 N -0.47 -22.45 6.19 -297.70 -1.84 -24.29 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 2.66 8.14 -2.38 -0.02 2.64 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 3.37 3.94 -2.39 -0.01 3.36 16 33 H 0.09 3.96 7.53 -2.39 -0.02 3.95 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.16 5.39 7.60 -2.91 -0.02 5.37 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.15 2.92 7.65 -2.91 -0.02 2.89 16 40 H 0.42 11.32 9.06 -74.06 -0.67 10.65 16 Total: -1.00 -77.65 339.00 2.13 -75.52 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.38 Total: 25.78 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 5.63 Total: 23.17 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -2.83 Total: -102.13 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: -2.75 Total: -68.62 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.70 Total: 46.29 kcal Total: -77.65 2.13 -75.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160823626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.746 kcal (2) G-P(sol) polarization free energy of solvation -77.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds