Wall clock time and date at job start Tue Mar 31 2020 11:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34795 * 117.00078 * 2 1 4 4 O 1.21526 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.47301 * 119.99769 * 180.02562 * 3 2 1 6 6 N 1.33704 * 118.97544 * 359.97438 * 5 3 2 7 7 C 1.31665 * 122.54026 * 179.97438 * 6 5 3 8 8 N 1.38388 * 120.22439 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00017 * 89.43605 * 8 7 6 10 10 C 1.36852 * 120.00135 * 269.71555 * 8 7 6 11 11 H 1.07997 * 120.00185 * 2.05231 * 10 8 7 12 12 C 1.38800 * 120.00188 * 182.05070 * 10 8 7 13 13 N 1.31568 * 119.99669 * 342.85741 * 12 10 8 14 14 Si 1.86801 * 120.00148 * 162.86060 * 12 10 8 15 15 H 1.48499 * 109.47108 * 90.00000 * 14 12 10 16 16 H 1.48498 * 109.46945 * 210.00093 * 14 12 10 17 17 H 1.48495 * 109.46872 * 329.99817 * 14 12 10 18 18 C 1.46096 * 119.55527 * 0.27106 * 7 6 5 19 19 C 1.39784 * 121.99320 * 180.31091 * 18 7 6 20 20 C 1.36524 * 119.53664 * 179.69940 * 19 18 7 21 21 C 1.39140 * 120.98630 * 359.71276 * 20 19 18 22 22 C 1.36446 * 120.94354 * 0.02562 * 21 20 19 23 23 C 1.40009 * 119.47219 * 359.97438 * 22 21 20 24 24 C 1.39045 * 118.96823 * 179.97438 * 5 3 2 25 25 O 1.35479 * 120.47324 * 0.02562 * 24 5 3 26 26 C 1.42898 * 117.00171 * 89.99614 * 25 24 5 27 27 H 1.08991 * 109.47101 * 60.00199 * 1 2 3 28 28 H 1.09010 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47072 * 299.99954 * 1 2 3 30 30 H 1.09011 * 109.46967 * 5.27451 * 9 8 7 31 31 H 1.09004 * 109.47040 * 125.26758 * 9 8 7 32 32 H 1.08998 * 109.47446 * 245.27550 * 9 8 7 33 33 H 0.97005 * 119.99941 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.22919 * 359.39187 * 19 18 7 35 35 H 1.07996 * 119.50247 * 179.73590 * 20 19 18 36 36 H 1.08003 * 119.52267 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.26337 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47190 * 60.00453 * 26 25 24 39 39 H 1.09001 * 109.47389 * 180.02562 * 26 25 24 40 40 H 1.09001 * 109.47194 * 300.00254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5349 1.2780 -0.0006 6 7 4.2429 0.1438 -0.0006 7 6 5.5595 0.1308 -0.0015 8 7 6.2442 -1.0718 -0.0010 9 6 6.5949 -1.7157 -1.2693 10 6 6.5888 -1.6625 1.1845 11 1 6.2976 -1.2071 2.1194 12 6 7.3127 -2.8468 1.1852 13 7 7.3804 -3.5770 0.0928 14 14 8.1905 -3.4040 2.7371 15 1 7.2774 -4.2516 3.5451 16 1 9.3971 -4.1874 2.3690 17 1 8.5949 -2.2158 3.5307 18 6 6.2927 1.3944 0.0033 19 6 7.6898 1.4401 -0.0039 20 6 8.3237 2.6492 -0.0051 21 6 7.5998 3.8375 -0.0053 22 6 6.2354 3.8279 -0.0037 23 6 5.5552 2.6041 -0.0024 24 6 4.1438 2.5281 -0.0011 25 8 3.3950 3.6571 -0.0006 26 6 3.0373 4.1978 1.2729 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.3206 -1.0615 -2.0970 31 1 7.6680 -1.9051 -1.2962 32 1 6.0569 -2.6595 -1.3586 33 1 7.8860 -4.4049 0.0934 34 1 8.2637 0.5252 -0.0035 35 1 9.4031 2.6838 -0.0064 36 1 8.1255 4.7809 -0.0067 37 1 5.6845 4.7569 -0.0034 38 1 3.9413 4.4457 1.8292 39 1 2.4395 5.0980 1.1305 40 1 2.4579 3.4618 1.8304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166801827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:02 Heat of formation + Delta-G solvation = -17.691333 kcal Electronic energy + Delta-G solvation = -26825.634128 eV Core-core repulsion = 22993.999727 eV Total energy + Delta-G solvation = -3831.634401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85893 -39.69887 -38.13656 -37.11005 -36.01922 -35.31821 -31.97288 -31.13707 -30.50029 -29.11392 -27.69350 -26.69502 -26.14157 -24.22484 -24.07627 -22.69245 -21.34048 -20.45546 -18.48918 -17.84819 -17.36212 -16.94353 -16.54056 -16.20420 -15.90949 -15.59979 -15.35674 -14.63000 -14.35570 -13.97263 -13.80727 -13.74216 -13.43234 -13.13775 -13.06755 -12.76543 -12.14259 -11.99618 -11.91509 -11.68366 -11.57479 -11.26629 -11.03047 -10.89659 -10.67042 -10.57135 -10.46125 -10.30606 -10.19936 -9.99094 -9.48935 -9.04105 -8.82758 -8.67259 -7.57811 -7.39408 -5.90560 -3.36936 0.34912 1.06825 1.95112 2.57078 2.89007 3.30294 3.36642 3.38753 3.46377 3.74229 4.13668 4.36548 4.56123 4.77480 4.89951 5.01998 5.15025 5.22795 5.27458 5.29256 5.30583 5.35578 5.39532 5.48926 5.57272 5.64119 5.68864 5.86129 5.91800 6.12141 6.27005 6.46111 6.52983 6.59026 6.67506 6.72276 7.06413 7.34818 7.51092 7.60820 7.71480 7.93318 8.14950 8.51524 8.98683 9.65506 9.97484 11.10424 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.005647 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.671276 B = 4956.960157 C = 6673.780450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.331 6.331 3 C 0.521 3.479 4 O -0.497 6.497 5 C 0.060 3.940 6 N -0.467 5.467 7 C 0.464 3.536 8 N -0.547 5.547 9 C 0.169 3.831 10 C -0.264 4.264 11 H 0.079 0.921 12 C 0.014 3.986 13 N -0.901 5.901 14 Si 0.912 3.088 15 H -0.285 1.285 16 H -0.286 1.286 17 H -0.277 1.277 18 C -0.082 4.082 19 C -0.055 4.055 20 C -0.127 4.127 21 C -0.104 4.104 22 C -0.108 4.108 23 C -0.052 4.052 24 C 0.104 3.896 25 O -0.313 6.313 26 C 0.046 3.954 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.000 1.000 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.257 0.743 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.042 0.958 39 H 0.093 0.907 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 13.029 -0.126 13.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.246 6.246 3 C 0.365 3.635 4 O -0.385 6.385 5 C -0.064 4.064 6 N -0.182 5.182 7 C 0.216 3.784 8 N -0.268 5.268 9 C 0.026 3.974 10 C -0.392 4.392 11 H 0.097 0.903 12 C -0.184 4.184 13 N -0.545 5.545 14 Si 0.740 3.260 15 H -0.212 1.212 16 H -0.212 1.212 17 H -0.203 1.203 18 C -0.090 4.090 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.057 4.057 24 C 0.056 3.944 25 O -0.228 6.228 26 C -0.048 4.048 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.078 0.922 30 H 0.018 0.982 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.112 0.888 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.458 12.490 -0.323 13.265 hybrid contribution 0.528 0.251 1.022 1.178 sum -3.930 12.741 0.699 13.352 Atomic orbital electron populations 1.23253 0.77053 1.03578 1.02029 1.86796 1.22372 1.31926 1.83513 1.20860 0.88189 0.81563 0.72860 1.90835 1.65992 1.35828 1.45853 1.20024 0.90811 0.89228 1.06386 1.68192 1.10145 1.27011 1.12886 1.19703 0.85376 0.87587 0.85755 1.41530 1.61054 1.18674 1.05508 1.21216 1.00462 0.94647 0.81031 1.19122 1.30310 1.05845 0.83877 0.90335 1.24821 0.99893 0.95994 0.97725 1.70219 1.43343 1.13895 1.27084 0.86153 0.79322 0.78449 0.82040 1.21185 1.21186 1.20280 1.20791 0.95277 0.92974 0.99964 1.21177 0.92925 0.99031 0.94309 1.21031 1.00294 0.92278 1.00905 1.20917 0.93896 0.98375 0.99075 1.20769 0.94476 0.96391 1.00981 1.18274 0.91653 0.94198 1.01585 1.19291 0.88863 0.85793 1.00433 1.85901 1.69366 1.38391 1.29148 1.22899 0.99176 0.98597 0.84140 0.92127 0.88132 0.92228 0.98181 0.92780 0.92452 0.93270 0.83412 0.85633 0.85852 0.85257 0.93940 0.88819 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.57 101.05 1.07 1.52 16 2 O -0.33 -6.09 10.34 -40.75 -0.42 -6.51 16 3 C 0.52 10.07 7.91 34.42 0.27 10.35 16 4 O -0.50 -9.40 13.54 -26.81 -0.36 -9.76 16 5 C 0.06 1.24 6.73 -83.07 -0.56 0.68 16 6 N -0.47 -10.73 10.06 -7.55 -0.08 -10.80 16 7 C 0.46 10.53 6.15 -153.42 -0.94 9.58 16 8 N -0.55 -13.55 2.36 -120.55 -0.28 -13.84 16 9 C 0.17 4.06 8.96 59.85 0.54 4.60 16 10 C -0.26 -6.98 9.75 -15.10 -0.15 -7.13 16 11 H 0.08 2.08 7.88 -52.49 -0.41 1.67 16 12 C 0.01 0.38 5.31 -17.46 -0.09 0.29 16 13 N -0.90 -24.45 9.75 55.49 0.54 -23.91 16 14 Si 0.91 20.72 29.59 -169.99 -5.03 15.69 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 C -0.08 -1.60 5.89 -104.85 -0.62 -2.22 16 19 C -0.05 -0.94 9.61 -39.62 -0.38 -1.33 16 20 C -0.13 -1.73 9.96 -39.87 -0.40 -2.12 16 21 C -0.10 -1.29 9.95 -39.89 -0.40 -1.69 16 22 C -0.11 -1.53 9.61 -39.56 -0.38 -1.91 16 23 C -0.05 -0.92 5.75 -106.74 -0.61 -1.54 16 24 C 0.10 1.92 5.75 -38.10 -0.22 1.70 16 25 O -0.31 -5.25 8.09 -40.66 -0.33 -5.58 16 26 C 0.05 0.60 10.42 101.05 1.05 1.66 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.00 -0.01 7.90 -51.92 -0.41 -0.42 16 31 H 0.05 1.32 7.12 -51.93 -0.37 0.95 16 32 H 0.06 1.51 7.07 -51.93 -0.37 1.14 16 33 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 34 H 0.15 2.71 7.69 -52.49 -0.40 2.30 16 35 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 36 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.13 1.57 7.71 -52.48 -0.40 1.17 16 38 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.65 7.45 -51.93 -0.39 0.26 16 LS Contribution 345.34 15.07 5.20 5.20 Total: -1.00 -30.74 345.34 -7.43 -38.16 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -4.85 Total: -1.09 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: -1.82 Total: 12.44 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.18 Total: -48.55 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.11 Total: -21.85 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.74 -7.43 -38.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.473 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds