Wall clock time and date at job start Tue Mar 31 2020 11:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34795 * 117.00078 * 2 1 4 4 O 1.21526 * 119.99841 * 359.97438 * 3 2 1 5 5 C 1.47301 * 119.99769 * 180.02562 * 3 2 1 6 6 N 1.33704 * 118.97544 * 359.97438 * 5 3 2 7 7 C 1.31665 * 122.54026 * 179.97438 * 6 5 3 8 8 N 1.38388 * 120.22439 * 179.97438 * 7 6 5 9 9 C 1.46502 * 120.00017 * 89.43605 * 8 7 6 10 10 C 1.36852 * 120.00135 * 269.71555 * 8 7 6 11 11 H 1.07997 * 120.00185 * 2.05231 * 10 8 7 12 12 C 1.38800 * 120.00188 * 182.05070 * 10 8 7 13 13 N 1.31568 * 119.99669 * 342.85741 * 12 10 8 14 14 Si 1.86801 * 120.00148 * 162.86060 * 12 10 8 15 15 H 1.48499 * 109.47108 * 90.00000 * 14 12 10 16 16 H 1.48498 * 109.46945 * 210.00093 * 14 12 10 17 17 H 1.48495 * 109.46872 * 329.99817 * 14 12 10 18 18 C 1.46096 * 119.55527 * 0.27106 * 7 6 5 19 19 C 1.39784 * 121.99320 * 180.31091 * 18 7 6 20 20 C 1.36524 * 119.53664 * 179.69940 * 19 18 7 21 21 C 1.39140 * 120.98630 * 359.71276 * 20 19 18 22 22 C 1.36446 * 120.94354 * 0.02562 * 21 20 19 23 23 C 1.40009 * 119.47219 * 359.97438 * 22 21 20 24 24 C 1.39045 * 118.96823 * 179.97438 * 5 3 2 25 25 O 1.35479 * 120.47324 * 0.02562 * 24 5 3 26 26 C 1.42898 * 117.00171 * 89.99614 * 25 24 5 27 27 H 1.08991 * 109.47101 * 60.00199 * 1 2 3 28 28 H 1.09010 * 109.47129 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47072 * 299.99954 * 1 2 3 30 30 H 1.09011 * 109.46967 * 5.27451 * 9 8 7 31 31 H 1.09004 * 109.47040 * 125.26758 * 9 8 7 32 32 H 1.08998 * 109.47446 * 245.27550 * 9 8 7 33 33 H 0.97005 * 119.99941 * 180.02562 * 13 12 10 34 34 H 1.08002 * 120.22919 * 359.39187 * 19 18 7 35 35 H 1.07996 * 119.50247 * 179.73590 * 20 19 18 36 36 H 1.08003 * 119.52267 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.26337 * 179.97438 * 22 21 20 38 38 H 1.09004 * 109.47190 * 60.00453 * 26 25 24 39 39 H 1.09001 * 109.47389 * 180.02562 * 26 25 24 40 40 H 1.09001 * 109.47194 * 300.00254 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5349 1.2780 -0.0006 6 7 4.2429 0.1438 -0.0006 7 6 5.5595 0.1308 -0.0015 8 7 6.2442 -1.0718 -0.0010 9 6 6.5949 -1.7157 -1.2693 10 6 6.5888 -1.6625 1.1845 11 1 6.2976 -1.2071 2.1194 12 6 7.3127 -2.8468 1.1852 13 7 7.3804 -3.5770 0.0928 14 14 8.1905 -3.4040 2.7371 15 1 7.2774 -4.2516 3.5451 16 1 9.3971 -4.1874 2.3690 17 1 8.5949 -2.2158 3.5307 18 6 6.2927 1.3944 0.0033 19 6 7.6898 1.4401 -0.0039 20 6 8.3237 2.6492 -0.0051 21 6 7.5998 3.8375 -0.0053 22 6 6.2354 3.8279 -0.0037 23 6 5.5552 2.6041 -0.0024 24 6 4.1438 2.5281 -0.0011 25 8 3.3950 3.6571 -0.0006 26 6 3.0373 4.1978 1.2729 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0278 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 6.3206 -1.0615 -2.0970 31 1 7.6680 -1.9051 -1.2962 32 1 6.0569 -2.6595 -1.3586 33 1 7.8860 -4.4049 0.0934 34 1 8.2637 0.5252 -0.0035 35 1 9.4031 2.6838 -0.0064 36 1 8.1255 4.7809 -0.0067 37 1 5.6845 4.7569 -0.0034 38 1 3.9413 4.4457 1.8292 39 1 2.4395 5.0980 1.1305 40 1 2.4579 3.4618 1.8304 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801827.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:01 Heat of formation + Delta-G solvation = -34.372275 kcal Electronic energy + Delta-G solvation = -26826.357468 eV Core-core repulsion = 22993.999727 eV Total energy + Delta-G solvation = -3832.357741 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.24734 -41.06789 -39.48273 -38.53579 -37.39799 -37.03114 -33.68578 -32.50569 -31.89162 -30.57405 -28.82690 -28.18393 -27.83936 -25.75154 -25.47986 -24.13124 -22.64384 -22.02827 -19.89548 -19.31750 -18.90982 -18.49567 -17.91688 -17.55261 -17.39519 -17.11894 -16.61710 -16.00809 -15.71417 -15.46236 -15.28593 -15.21374 -14.71355 -14.51246 -14.38058 -14.10603 -14.01067 -13.26776 -13.09867 -13.04061 -12.93645 -12.82823 -12.70112 -12.53060 -12.19073 -12.14536 -12.03385 -11.87550 -11.79923 -11.46324 -10.83069 -10.79346 -10.40830 -10.08746 -9.31485 -8.95627 -7.89980 -5.38905 -1.02836 -0.25585 0.68196 1.13006 1.48699 1.49138 1.59428 1.61246 2.09420 2.36870 2.47764 2.86714 2.99709 3.17790 3.47128 3.70646 3.75995 3.87367 4.02907 4.22859 4.23680 4.28723 4.36424 4.38677 4.43488 4.45730 4.59677 4.64141 4.66436 4.72853 4.87945 5.06686 5.17952 5.25954 5.35893 5.44279 5.50175 5.55444 5.68114 5.90467 6.16935 6.24955 6.51765 6.95885 7.03230 7.73517 8.05778 9.10414 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.005647 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.671276 B = 4956.960157 C = 6673.780450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.521 3.479 4 O -0.501 6.501 5 C 0.016 3.984 6 N -0.497 5.497 7 C 0.425 3.575 8 N -0.558 5.558 9 C 0.189 3.811 10 C -0.272 4.272 11 H 0.068 0.932 12 C -0.032 4.032 13 N -0.928 5.928 14 Si 0.976 3.024 15 H -0.289 1.289 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.090 4.090 19 C -0.086 4.086 20 C -0.097 4.097 21 C -0.087 4.087 22 C -0.099 4.099 23 C -0.071 4.071 24 C 0.132 3.868 25 O -0.321 6.321 26 C 0.041 3.959 27 H 0.069 0.931 28 H 0.126 0.874 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.043 0.957 32 H 0.024 0.976 33 H 0.255 0.745 34 H 0.126 0.874 35 H 0.162 0.838 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.462 16.670 0.637 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.366 3.634 4 O -0.391 6.391 5 C -0.108 4.108 6 N -0.212 5.212 7 C 0.177 3.823 8 N -0.279 5.279 9 C 0.046 3.954 10 C -0.400 4.400 11 H 0.086 0.914 12 C -0.227 4.227 13 N -0.574 5.574 14 Si 0.802 3.198 15 H -0.216 1.216 16 H -0.208 1.208 17 H -0.193 1.193 18 C -0.097 4.097 19 C -0.106 4.106 20 C -0.115 4.115 21 C -0.105 4.105 22 C -0.117 4.117 23 C -0.076 4.076 24 C 0.084 3.916 25 O -0.236 6.236 26 C -0.052 4.052 27 H 0.087 0.913 28 H 0.144 0.856 29 H 0.088 0.912 30 H 0.032 0.968 31 H 0.062 0.938 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.180 0.820 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.329 16.171 0.445 16.516 hybrid contribution 0.120 -0.646 0.778 1.018 sum -3.208 15.525 1.223 15.901 Atomic orbital electron populations 1.23613 0.74315 1.05647 1.02946 1.86762 1.25258 1.31794 1.83311 1.20757 0.87996 0.81828 0.72842 1.90795 1.65968 1.35740 1.46554 1.20198 0.91354 0.89551 1.09690 1.67881 1.10802 1.29010 1.13541 1.19920 0.85497 0.87899 0.88964 1.41486 1.61843 1.19700 1.04839 1.20858 0.99142 0.93490 0.81912 1.19242 1.30433 1.05967 0.84369 0.91368 1.25558 1.00509 0.96024 1.00656 1.70371 1.44010 1.14142 1.28838 0.85175 0.77970 0.78009 0.78629 1.21594 1.20769 1.19254 1.20639 0.96214 0.92111 1.00701 1.21099 0.91952 1.00111 0.97451 1.21492 1.02228 0.91105 0.96697 1.21459 0.93205 0.99816 0.96059 1.21153 0.95510 0.95677 0.99383 1.18469 0.91232 0.95037 1.02842 1.19407 0.89508 0.85731 0.96965 1.85853 1.69246 1.37357 1.31191 1.23173 1.00455 0.98950 0.82595 0.91267 0.85596 0.91216 0.96751 0.93829 0.95714 0.93524 0.85569 0.81999 0.80759 0.82461 0.91816 0.85743 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.57 113.37 1.20 1.91 16 2 O -0.36 -13.57 10.34 -57.07 -0.59 -14.16 16 3 C 0.52 20.75 7.91 70.21 0.56 21.30 16 4 O -0.50 -19.02 13.54 26.94 0.36 -18.65 16 5 C 0.02 0.68 6.73 41.44 0.28 0.95 16 6 N -0.50 -24.15 10.06 -177.81 -1.79 -25.94 16 7 C 0.42 20.28 6.15 135.31 0.83 21.11 16 8 N -0.56 -29.22 2.36 -535.30 -1.26 -30.49 16 9 C 0.19 9.69 8.96 127.77 1.15 10.83 16 10 C -0.27 -15.07 9.75 84.04 0.82 -14.25 16 11 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 12 C -0.03 -1.71 5.31 84.87 0.45 -1.26 16 13 N -0.93 -52.54 9.75 21.65 0.21 -52.33 16 14 Si 0.98 43.58 29.59 68.60 2.03 45.61 16 15 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 16 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 18 C -0.09 -3.52 5.89 -20.02 -0.12 -3.64 16 19 C -0.09 -2.91 9.61 22.24 0.21 -2.70 16 20 C -0.10 -2.25 9.96 22.09 0.22 -2.03 16 21 C -0.09 -1.66 9.95 22.07 0.22 -1.44 16 22 C -0.10 -2.37 9.61 22.28 0.21 -2.16 16 23 C -0.07 -2.40 5.75 -21.24 -0.12 -2.53 16 24 C 0.13 4.81 5.75 23.23 0.13 4.95 16 25 O -0.32 -10.16 8.09 -66.24 -0.54 -10.70 16 26 C 0.04 0.98 10.42 113.37 1.18 2.16 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.01 0.65 7.90 -2.38 -0.02 0.63 16 31 H 0.04 2.26 7.12 -2.39 -0.02 2.24 16 32 H 0.02 1.39 7.07 -2.39 -0.02 1.37 16 33 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 34 H 0.13 4.77 7.69 -2.91 -0.02 4.75 16 35 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 36 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.16 2.92 7.71 -2.91 -0.02 2.89 16 38 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.03 0.83 7.45 -2.39 -0.02 0.81 16 Total: -1.00 -71.83 345.34 6.72 -65.12 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 1.07 Total: 8.33 kcal Atomic # 6 Polarization: 25.99 SS G_CDS: 7.22 Total: 33.21 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -2.84 Total: -108.76 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.76 Total: -43.51 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -71.83 6.72 -65.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801827.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.744 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds