Wall clock time and date at job start Tue Mar 31 2020 11:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35621 * 117.00113 * 2 1 4 4 C 1.39151 * 120.50263 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.62779 * 179.72628 * 4 3 2 6 6 C 1.39934 * 119.59703 * 0.48221 * 5 4 3 7 7 N 1.38902 * 119.50043 * 179.78895 * 6 5 4 8 8 C 1.46501 * 119.99869 * 359.72465 * 7 6 5 9 9 C 1.50705 * 109.47507 * 180.02562 * 8 7 6 10 10 C 1.38245 * 119.92677 * 89.99320 * 9 8 7 11 11 C 1.38247 * 120.14478 * 180.02562 * 10 9 8 12 12 C 1.38558 * 119.99917 * 359.97438 * 11 10 9 13 13 O 1.35995 * 120.07405 * 179.97438 * 12 11 10 14 14 C 1.39155 * 119.85524 * 359.97438 * 12 11 10 15 15 O 1.35994 * 120.07385 * 179.72156 * 14 12 11 16 16 C 1.38238 * 119.92004 * 269.95476 * 9 8 7 17 17 N 1.31872 * 121.00691 * 359.50369 * 6 5 4 18 18 C 1.33824 * 121.47179 * 0.26624 * 17 6 5 19 19 C 1.40915 * 119.85007 * 179.97438 * 18 17 6 20 20 H 1.08001 * 120.00196 * 179.97438 * 19 18 17 21 21 C 1.40024 * 119.99703 * 359.97438 * 19 18 17 22 22 N 1.30780 * 120.00222 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99813 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47257 * 60.00118 * 23 21 19 25 25 H 1.48501 * 109.47057 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47181 * 299.99688 * 23 21 19 27 27 H 1.08998 * 109.47398 * 60.00265 * 1 2 3 28 28 H 1.09005 * 109.47147 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46977 * 300.00217 * 1 2 3 30 30 H 1.08004 * 120.68792 * 359.97438 * 4 3 2 31 31 H 1.08001 * 120.20299 * 180.26515 * 5 4 3 32 32 H 0.97005 * 120.00558 * 179.72467 * 7 6 5 33 33 H 1.09001 * 109.47613 * 59.99764 * 8 7 6 34 34 H 1.09003 * 109.46837 * 299.99807 * 8 7 6 35 35 H 1.08002 * 119.92791 * 359.97438 * 10 9 8 36 36 H 1.07996 * 120.00046 * 179.97438 * 11 10 9 37 37 H 0.96706 * 113.99739 * 270.01762 * 13 12 11 38 38 H 0.96696 * 114.00006 * 90.00716 * 15 14 12 39 39 H 1.07998 * 120.00548 * 0.02562 * 16 9 8 40 40 H 0.97003 * 119.99670 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0063 6 6 3.3642 3.6108 0.0012 7 7 4.0329 4.8282 0.0026 8 6 3.2735 6.0810 0.0032 9 6 4.2280 7.2472 0.0041 10 6 4.6652 7.7815 -1.1937 11 6 5.5412 8.8510 -1.1982 12 6 5.9827 9.3900 -0.0005 13 8 6.8449 10.4416 -0.0031 14 6 5.5418 8.8528 1.2051 15 8 5.9766 9.3747 2.3833 16 6 4.6639 7.7806 1.2026 17 7 4.0577 2.4891 0.0007 18 6 3.4544 1.2946 -0.0002 19 6 4.2291 0.1175 -0.0012 20 1 3.7447 -0.8478 -0.0015 21 6 5.6269 0.1995 -0.0018 22 7 6.2135 1.3684 -0.0019 23 14 6.6539 -1.3609 -0.0039 24 1 6.3408 -2.1580 -1.2170 25 1 8.0956 -1.0046 -0.0048 26 1 6.3420 -2.1604 1.2080 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2176 2.3479 0.0005 31 1 1.4100 4.5196 0.0112 32 1 5.0027 4.8490 0.0031 33 1 2.6452 6.1247 0.8929 34 1 2.6462 6.1261 -0.8871 35 1 4.3222 7.3621 -2.1279 36 1 5.8816 9.2663 -2.1352 37 1 7.7775 10.1857 -0.0039 38 1 5.4216 10.0885 2.7259 39 1 4.3207 7.3615 2.1369 40 1 7.1819 1.4250 -0.0027 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169993210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:00 Heat of formation + Delta-G solvation = -75.083211 kcal Electronic energy + Delta-G solvation = -25136.390512 eV Core-core repulsion = 21302.267412 eV Total energy + Delta-G solvation = -3834.123099 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23413 -40.57857 -38.81163 -37.95799 -37.88968 -36.14058 -34.88190 -32.15294 -31.94562 -30.97872 -29.86081 -28.00376 -26.94456 -26.16374 -23.84975 -23.44935 -22.60426 -21.98853 -19.60561 -19.29895 -19.00284 -18.25181 -18.07547 -17.36296 -16.82122 -16.63940 -16.56005 -16.20083 -16.10386 -15.51072 -15.07727 -14.89411 -14.75984 -14.61690 -14.29313 -13.98215 -13.70840 -13.44817 -13.25783 -12.97811 -12.89974 -12.87851 -12.73183 -12.46517 -12.20416 -12.05874 -11.95579 -11.56401 -11.24806 -11.18769 -10.11593 -9.90945 -9.88009 -9.56728 -9.52709 -8.23838 -8.05519 -6.30714 0.01103 0.20533 1.02196 1.29999 1.42497 1.54368 1.59704 2.27267 2.29349 2.86224 2.93291 3.05677 3.11852 3.34186 3.70818 3.83793 3.99775 4.24327 4.29764 4.30572 4.47677 4.52447 4.54101 4.60590 4.68133 4.77505 4.78976 4.92621 4.94103 4.96495 5.13137 5.25786 5.34572 5.51524 5.53447 5.66591 5.74954 5.88111 6.28071 6.43861 6.61177 6.74678 6.85173 6.85992 7.01001 7.35876 8.31959 8.50751 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013790 B = 0.003247 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.898287 B = 8621.745182 C =10079.181496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.342 4.342 6 C 0.375 3.625 7 N -0.730 5.730 8 C 0.184 3.816 9 C -0.095 4.095 10 C -0.093 4.093 11 C -0.131 4.131 12 C 0.081 3.919 13 O -0.501 6.501 14 C 0.070 3.930 15 O -0.502 6.502 16 C -0.118 4.118 17 N -0.544 5.544 18 C 0.254 3.746 19 C -0.453 4.453 20 H 0.083 0.917 21 C 0.026 3.974 22 N -0.749 5.749 23 Si 0.984 3.016 24 H -0.261 1.261 25 H -0.266 1.266 26 H -0.261 1.261 27 H 0.048 0.952 28 H 0.110 0.890 29 H 0.047 0.953 30 H 0.132 0.868 31 H 0.123 0.877 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.133 0.867 40 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 13.946 -0.518 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.368 4.368 6 C 0.137 3.863 7 N -0.366 5.366 8 C 0.060 3.940 9 C -0.095 4.095 10 C -0.111 4.111 11 C -0.150 4.150 12 C 0.035 3.965 13 O -0.314 6.314 14 C 0.025 3.975 15 O -0.315 6.315 16 C -0.137 4.137 17 N -0.267 5.267 18 C 0.125 3.875 19 C -0.485 4.485 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.371 5.371 23 Si 0.804 3.196 24 H -0.185 1.185 25 H -0.191 1.191 26 H -0.186 1.186 27 H 0.066 0.934 28 H 0.128 0.872 29 H 0.066 0.934 30 H 0.150 0.850 31 H 0.141 0.859 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.160 0.840 36 H 0.172 0.828 37 H 0.268 0.732 38 H 0.266 0.734 39 H 0.151 0.849 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.024 13.976 -0.563 14.025 hybrid contribution -0.332 -0.349 0.221 0.530 sum -1.355 13.627 -0.343 13.698 Atomic orbital electron populations 1.23021 0.79135 1.03972 1.00580 1.85853 1.21032 1.27319 1.91038 1.20094 0.93230 0.84625 1.16811 1.21046 0.98911 0.91623 1.02057 1.20720 0.92511 0.97599 1.26002 1.18881 0.88722 0.87171 0.91572 1.44217 1.07794 1.01085 1.83479 1.20075 0.92209 0.79719 1.02002 1.19759 0.99403 0.97105 0.93259 1.21209 0.96386 0.95386 0.98165 1.21555 0.98930 0.96210 0.98265 1.18953 0.96324 0.89424 0.91770 1.84719 1.20779 1.29518 1.96346 1.18877 0.97719 0.95345 0.85529 1.84766 1.55081 1.56318 1.35329 1.21377 0.96902 0.96597 0.98860 1.68310 1.36187 0.95781 1.26442 1.18180 0.86752 0.91585 0.90981 1.19712 0.91934 0.93018 1.43870 0.89850 1.26904 0.99238 1.00615 0.92774 1.70243 1.10771 1.26592 1.29541 0.85253 0.76797 0.77621 0.79935 1.18505 1.19067 1.18588 0.93388 0.87151 0.93445 0.84987 0.85922 0.77458 0.91702 0.91057 0.83991 0.82779 0.73220 0.73353 0.84942 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.83 113.37 1.11 2.05 16 2 O -0.34 -15.98 9.61 -89.34 -0.86 -16.84 16 3 C -0.10 -5.18 6.74 23.23 0.16 -5.02 16 4 C -0.11 -5.05 9.12 22.51 0.21 -4.84 16 5 C -0.34 -15.18 9.33 22.70 0.21 -14.96 16 6 C 0.37 18.20 7.65 133.45 1.02 19.22 16 7 N -0.73 -28.77 5.72 -348.57 -1.99 -30.76 16 8 C 0.18 5.37 5.00 85.63 0.43 5.80 16 9 C -0.09 -2.38 5.25 -19.86 -0.10 -2.49 16 10 C -0.09 -2.06 9.69 22.27 0.22 -1.84 16 11 C -0.13 -2.62 9.98 22.35 0.22 -2.40 16 12 C 0.08 1.73 6.72 22.57 0.15 1.88 16 13 O -0.50 -9.25 13.29 -79.63 -1.06 -10.31 16 14 C 0.07 1.63 6.72 22.57 0.15 1.79 16 15 O -0.50 -10.58 13.29 -79.62 -1.06 -11.64 16 16 C -0.12 -2.93 9.63 22.35 0.22 -2.71 16 17 N -0.54 -30.79 7.88 -186.18 -1.47 -32.26 16 18 C 0.25 14.75 6.56 40.23 0.26 15.01 16 19 C -0.45 -26.03 8.94 23.36 0.21 -25.82 16 20 H 0.08 4.68 7.31 -2.91 -0.02 4.66 16 21 C 0.03 1.39 5.50 85.28 0.47 1.86 16 22 N -0.75 -41.04 11.45 21.84 0.25 -40.79 16 23 Si 0.98 39.82 29.56 68.60 2.03 41.85 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 H 0.05 1.46 7.69 -2.39 -0.02 1.44 16 28 H 0.11 2.90 8.14 -2.38 -0.02 2.88 16 29 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 30 H 0.13 4.94 6.44 -2.91 -0.02 4.92 16 31 H 0.12 4.58 6.67 -2.91 -0.02 4.56 16 32 H 0.39 16.14 8.58 -92.70 -0.80 15.35 16 33 H 0.06 1.84 7.85 -2.39 -0.02 1.82 16 34 H 0.07 1.96 7.87 -2.39 -0.02 1.94 16 35 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 37 H 0.41 4.37 9.07 -74.05 -0.67 3.70 16 38 H 0.41 4.85 9.06 -74.06 -0.67 4.18 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 40 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -73.35 347.59 -0.24 -73.59 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: -1.01 Total: 39.65 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 4.93 Total: -12.49 kcal Atomic # 7 Polarization: -100.60 SS G_CDS: -3.21 Total: -103.81 kcal Atomic # 8 Polarization: -35.82 SS G_CDS: -2.97 Total: -38.79 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -73.35 -0.24 -73.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169993210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.494 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds