Wall clock time and date at job start Tue Mar 31 2020 11:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46907 * 2 1 4 4 C 1.34899 * 117.00135 * 179.97438 * 3 2 1 5 5 O 1.21663 * 120.00334 * 0.02562 * 4 3 2 6 6 C 1.46271 * 120.00233 * 179.97438 * 4 3 2 7 7 C 1.47034 * 127.01576 * 359.95149 * 6 4 3 8 8 C 1.34113 * 106.73067 * 180.02562 * 7 6 4 9 9 N 1.37342 * 109.36680 * 359.97438 * 8 7 6 10 10 C 1.40231 * 124.94656 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.99953 * 129.74982 * 10 9 8 12 12 C 1.38004 * 120.00222 * 179.72623 * 11 10 9 13 13 C 1.38910 * 119.99472 * 0.55675 * 12 11 10 14 14 O 1.35770 * 120.00084 * 179.74553 * 13 12 11 15 15 C 1.34816 * 116.99855 * 174.42860 * 14 13 12 16 16 H 1.07997 * 120.00498 * 5.05757 * 15 14 13 17 17 C 1.38643 * 119.99904 * 185.05409 * 15 14 13 18 18 N 1.31570 * 119.99617 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47303 * 89.99975 * 19 17 15 21 21 H 1.48500 * 109.47116 * 210.00239 * 19 17 15 22 22 H 1.48504 * 109.47061 * 330.00006 * 19 17 15 23 23 C 1.38909 * 119.99718 * 359.71932 * 13 12 11 24 24 C 1.37999 * 119.99481 * 0.02562 * 23 13 12 25 25 C 1.35889 * 110.11699 * 0.02562 * 9 8 7 26 26 N 1.38001 * 126.09350 * 180.02562 * 25 9 8 27 27 H 1.08996 * 109.47220 * 60.00740 * 1 2 3 28 28 H 1.09008 * 109.46866 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47643 * 300.00197 * 1 2 3 30 30 H 1.08996 * 109.47643 * 239.99803 * 2 1 3 31 31 H 1.08999 * 109.46949 * 119.99706 * 2 1 3 32 32 H 1.07995 * 126.63193 * 0.05778 * 7 6 4 33 33 H 1.08011 * 125.31536 * 180.26680 * 8 7 6 34 34 H 1.07997 * 119.99886 * 0.02562 * 11 10 9 35 35 H 1.07999 * 120.00101 * 180.27176 * 12 11 10 36 36 H 0.97000 * 119.99376 * 179.97438 * 18 17 15 37 37 H 1.07999 * 120.00253 * 179.97438 * 23 13 12 38 38 H 1.08008 * 119.99710 * 180.02562 * 24 23 13 39 39 H 0.97002 * 119.99777 * 0.02562 * 26 25 9 40 40 H 0.96996 * 120.00002 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3436 1.5241 0.0005 5 8 4.0849 0.5594 0.0005 6 6 3.9027 2.8758 0.0000 7 6 3.1561 4.1425 -0.0021 8 6 4.0666 5.1272 -0.0024 9 7 5.3271 4.5821 -0.0001 10 6 6.5207 5.3182 0.0008 11 6 7.5142 5.0291 0.9272 12 6 8.6911 5.7498 0.9245 13 6 8.8773 6.7720 0.0026 14 8 10.0330 7.4845 0.0032 15 6 10.1984 8.3833 -0.9880 16 1 9.3972 8.5690 -1.6879 17 6 11.3972 9.0693 -1.1088 18 7 12.3735 8.8427 -0.2564 19 14 11.6261 10.3151 -2.4816 20 1 11.1928 11.6553 -2.0112 21 1 13.0585 10.3661 -2.8700 22 1 10.8090 9.9144 -3.6551 23 6 7.8813 7.0649 -0.9203 24 6 6.7066 6.3406 -0.9207 25 6 5.2496 3.2254 0.0012 26 7 6.3165 2.3501 0.0041 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 2.0823 4.2576 -0.0027 33 1 3.8433 6.1840 0.0003 34 1 7.3677 4.2371 1.6466 35 1 9.4655 5.5220 1.6421 36 1 13.2123 9.3224 -0.3412 37 1 8.0258 7.8599 -1.6368 38 1 5.9323 6.5680 -1.6385 39 1 7.2243 2.6920 0.0057 40 1 6.1587 1.3931 0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605351.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:26 Heat of formation + Delta-G solvation = -40.201680 kcal Electronic energy + Delta-G solvation = -24899.856486 eV Core-core repulsion = 21067.245963 eV Total energy + Delta-G solvation = -3832.610523 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.36537 -39.95242 -39.07140 -36.74038 -36.35226 -34.22383 -32.76297 -32.09712 -31.49669 -30.57863 -27.95787 -27.50080 -25.64162 -24.14783 -22.64160 -22.40363 -21.54069 -20.39725 -19.54239 -18.43381 -18.20293 -17.24183 -16.91846 -16.49760 -16.37242 -15.40316 -15.24622 -14.89346 -14.68284 -14.31375 -14.01750 -13.91557 -13.74826 -13.52388 -13.14952 -13.06271 -12.86777 -12.65010 -12.14851 -12.03027 -11.90060 -11.69377 -11.63297 -11.55447 -11.15562 -10.98852 -10.61088 -10.53065 -10.45261 -10.28444 -9.65897 -9.16813 -8.70804 -8.60880 -7.43853 -7.21006 -6.68558 -4.26814 1.59500 1.82795 1.94453 2.61263 2.72269 3.00069 3.01389 3.06330 3.18798 3.53637 3.77903 3.97458 4.18944 4.80718 4.84435 4.85924 4.96024 5.06945 5.14850 5.21926 5.27191 5.32873 5.38202 5.60124 5.62266 5.79083 5.84295 5.90410 6.02119 6.04434 6.17289 6.43800 6.54314 6.61343 6.69498 6.76884 6.92718 6.98299 7.13408 7.21252 7.35874 7.74530 7.83781 7.89144 8.13240 8.75867 9.39794 10.47954 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.038107 B = 0.002309 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.595507 B =12123.250702 C =12460.516078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.350 6.350 4 C 0.550 3.450 5 O -0.551 6.551 6 C -0.323 4.323 7 C -0.125 4.125 8 C -0.024 4.024 9 N -0.400 5.400 10 C -0.005 4.005 11 C -0.076 4.076 12 C -0.176 4.176 13 C 0.157 3.843 14 O -0.164 6.164 15 C -0.395 4.395 16 H 0.096 0.904 17 C 0.042 3.958 18 N -0.853 5.853 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.275 1.275 22 H -0.266 1.266 23 C -0.221 4.221 24 C -0.056 4.056 25 C 0.423 3.577 26 N -0.839 5.839 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.148 0.852 33 H 0.166 0.834 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.274 0.726 37 H 0.137 0.863 38 H 0.118 0.882 39 H 0.403 0.597 40 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.495 -10.037 -0.305 19.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.402 3.598 5 O -0.445 6.445 6 C -0.335 4.335 7 C -0.149 4.149 8 C -0.145 4.145 9 N -0.081 5.081 10 C -0.095 4.095 11 C -0.095 4.095 12 C -0.196 4.196 13 C 0.101 3.899 14 O -0.065 6.065 15 C -0.471 4.471 16 H 0.113 0.887 17 C -0.164 4.164 18 N -0.486 5.486 19 Si 0.768 3.232 20 H -0.196 1.196 21 H -0.200 1.200 22 H -0.190 1.190 23 C -0.240 4.240 24 C -0.076 4.076 25 C 0.200 3.800 26 N -0.388 5.388 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.166 0.834 33 H 0.183 0.817 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.084 0.916 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.232 0.768 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -15.682 -10.012 -0.112 18.605 hybrid contribution 0.442 0.295 -0.676 0.859 sum -15.240 -9.716 -0.788 18.091 Atomic orbital electron populations 1.21792 0.92979 1.02596 1.03416 1.22516 0.95057 0.81556 1.02051 1.86155 1.24505 1.31037 1.85021 1.19774 0.79745 0.88460 0.71870 1.90738 1.60148 1.42820 1.50803 1.18496 0.89608 0.90660 1.34708 1.21643 0.98294 0.89529 1.05429 1.21554 0.81160 0.98945 1.12856 1.41053 1.05603 1.02456 1.59026 1.17259 0.87620 1.01333 1.03282 1.20525 0.92810 0.99754 0.96456 1.20072 0.98581 0.98153 1.02757 1.19434 0.87242 0.90206 0.93025 1.83981 1.31193 1.45129 1.46228 1.21402 1.01165 1.17074 1.07460 0.88664 1.25372 0.94215 0.98285 0.98529 1.70037 1.04407 1.39569 1.34549 0.85654 0.78382 0.79601 0.79528 1.19633 1.20044 1.18991 1.21068 0.94249 1.04729 1.03999 1.20632 0.96990 0.94213 0.95719 1.17341 0.87817 0.81016 0.93824 1.41830 1.05502 1.08509 1.82952 0.91576 0.90634 0.91579 0.91927 0.91928 0.83437 0.81655 0.86368 0.85460 0.91605 0.84542 0.86424 0.76751 0.74067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.65 6.10 37.16 0.23 0.88 16 3 O -0.35 -4.68 10.00 -41.03 -0.41 -5.09 16 4 C 0.55 8.44 7.91 33.96 0.27 8.70 16 5 O -0.55 -9.08 14.93 -19.39 -0.29 -9.37 16 6 C -0.32 -4.93 6.34 -102.77 -0.65 -5.59 16 7 C -0.12 -1.67 10.97 -37.47 -0.41 -2.08 16 8 C -0.02 -0.33 10.98 -16.54 -0.18 -0.51 16 9 N -0.40 -6.08 2.86 -59.62 -0.17 -6.26 16 10 C -0.01 -0.08 5.75 -83.53 -0.48 -0.57 16 11 C -0.08 -1.23 8.35 -39.43 -0.33 -1.56 16 12 C -0.18 -3.29 9.99 -39.42 -0.39 -3.68 16 13 C 0.16 3.39 6.65 -39.08 -0.26 3.13 16 14 O -0.16 -4.27 9.75 0.03 0.00 -4.27 16 15 C -0.40 -10.17 9.48 30.88 0.29 -9.87 16 16 H 0.10 2.23 5.20 -52.49 -0.27 1.96 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.85 -23.42 13.67 55.48 0.76 -22.67 16 19 Si 0.94 19.11 29.55 -169.99 -5.02 14.08 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 23 C -0.22 -4.26 9.16 -39.42 -0.36 -4.63 16 24 C -0.06 -0.94 9.63 -39.43 -0.38 -1.32 16 25 C 0.42 6.46 7.69 -152.91 -1.18 5.28 16 26 N -0.84 -11.27 8.86 31.56 0.28 -10.99 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.12 1.71 7.80 -52.49 -0.41 1.30 16 35 H 0.13 2.27 8.06 -52.49 -0.42 1.84 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.14 2.62 5.63 -52.49 -0.30 2.32 16 38 H 0.12 1.72 8.05 -52.48 -0.42 1.30 16 39 H 0.40 5.04 7.21 -40.82 -0.29 4.75 16 40 H 0.42 5.53 7.02 -40.82 -0.29 5.24 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -29.58 349.80 -7.63 -37.21 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -4.50 Total: 13.61 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -3.55 Total: -11.53 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.87 Total: -39.91 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.70 Total: -18.73 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.58 -7.63 -37.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605351.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.995 kcal (2) G-P(sol) polarization free energy of solvation -29.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds