Wall clock time and date at job start Tue Mar 31 2020 11:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.47299 * 2 1 4 4 C 1.34911 * 117.00204 * 179.97438 * 3 2 1 5 5 O 1.21639 * 119.99898 * 0.02562 * 4 3 2 6 6 C 1.46387 * 120.00356 * 180.02562 * 4 3 2 7 7 C 1.38118 * 126.19258 * 179.97438 * 6 4 3 8 8 C 1.40157 * 107.14814 * 180.28328 * 7 6 4 9 9 N 1.40684 * 126.08870 * 179.73497 * 8 7 6 10 10 C 1.35936 * 107.82195 * 359.56876 * 8 7 6 11 11 N 1.36109 * 108.77838 * 0.43799 * 10 8 7 12 12 C 1.40064 * 125.68497 * 179.69105 * 11 10 8 13 13 C 1.38929 * 120.00457 * 129.76612 * 12 11 10 14 14 C 1.37982 * 120.00236 * 179.70065 * 13 12 11 15 15 C 1.38930 * 119.99795 * 0.59336 * 14 13 12 16 16 O 1.35759 * 119.99911 * 179.70206 * 15 14 13 17 17 C 1.34817 * 117.00080 * 174.43403 * 16 15 14 18 18 H 1.08007 * 119.99595 * 5.06155 * 17 16 15 19 19 C 1.38637 * 119.99979 * 185.05336 * 17 16 15 20 20 N 1.31565 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99650 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46919 * 120.00512 * 21 19 17 24 24 H 1.48497 * 109.47314 * 240.00413 * 21 19 17 25 25 C 1.38923 * 119.99892 * 359.67995 * 15 14 13 26 26 C 1.37986 * 120.00346 * 0.02562 * 25 15 14 27 27 H 1.08993 * 109.46713 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47044 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47193 * 239.99666 * 2 1 3 31 31 H 1.09007 * 109.46890 * 120.00066 * 2 1 3 32 32 H 1.07997 * 126.42929 * 0.02562 * 7 6 4 33 33 H 0.96999 * 120.00197 * 0.02662 * 9 8 7 34 34 H 0.97004 * 119.99680 * 180.02562 * 9 8 7 35 35 H 1.08005 * 125.61051 * 180.13296 * 10 8 7 36 36 H 1.08002 * 119.99705 * 359.97327 * 13 12 11 37 37 H 1.07993 * 120.00292 * 180.27373 * 14 13 12 38 38 H 0.96998 * 119.99657 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.99380 * 179.97438 * 25 15 14 40 40 H 1.07998 * 120.00043 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3439 1.5240 0.0005 5 8 4.0848 0.5593 0.0005 6 6 3.9035 2.8766 0.0011 7 6 5.2453 3.2042 0.0022 8 6 5.3291 4.6032 0.0091 9 7 6.5135 5.3624 0.0176 10 6 4.0622 5.0960 0.0023 11 7 3.1867 4.0538 0.0012 12 6 1.7901 4.1600 0.0010 13 6 1.0393 3.4461 -0.9245 14 6 -0.3369 3.5459 -0.9207 15 6 -0.9710 4.3699 0.0007 16 8 -2.3247 4.4728 0.0005 17 6 -2.8836 5.1968 0.9911 18 1 -2.2564 5.7302 1.6900 19 6 -4.2634 5.2565 1.1123 20 7 -5.0273 4.6064 0.2610 21 14 -5.0377 6.2590 2.4852 22 1 -3.9691 6.8892 3.3013 23 1 -5.9013 7.3159 1.8998 24 1 -5.8585 5.3694 3.3455 25 6 -0.2199 5.0882 0.9225 26 6 1.1560 4.9837 0.9227 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 6.0744 2.5121 0.0024 33 1 7.3752 4.9169 0.0188 34 1 6.4685 6.3314 0.0223 35 1 3.7944 6.1423 0.0030 36 1 1.5325 2.8095 -1.6442 37 1 -0.9209 2.9875 -1.6373 38 1 -5.9927 4.6479 0.3460 39 1 -0.7129 5.7291 1.6385 40 1 1.7399 5.5418 1.6396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212605988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:09 Heat of formation + Delta-G solvation = -28.895730 kcal Electronic energy + Delta-G solvation = -26103.635141 eV Core-core repulsion = 22271.514881 eV Total energy + Delta-G solvation = -3832.120260 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50401 -39.85850 -39.04727 -36.85805 -36.33508 -34.34154 -32.47067 -31.55171 -31.01613 -30.44314 -28.76234 -27.12507 -25.44576 -24.15314 -22.41665 -22.24842 -21.74058 -20.05588 -19.78241 -18.44138 -18.14524 -17.08120 -16.76731 -16.49070 -16.33498 -15.22361 -14.97245 -14.77928 -14.61404 -14.23178 -14.04497 -13.75939 -13.60154 -13.34774 -13.21533 -12.94818 -12.74029 -12.55760 -12.02802 -11.87015 -11.78314 -11.67093 -11.58680 -11.30933 -11.12911 -10.86622 -10.57637 -10.53796 -10.47375 -10.28491 -9.52437 -9.02100 -8.45357 -8.38827 -7.51306 -6.96987 -6.61378 -4.19179 1.21222 1.99512 2.05826 2.85203 2.94767 3.03525 3.04388 3.06598 3.10938 3.33475 3.83753 4.16211 4.37982 4.91068 4.92906 5.07683 5.09710 5.15041 5.19252 5.38330 5.38609 5.41072 5.54452 5.69745 5.92510 5.95374 5.97261 6.00591 6.10685 6.25694 6.32977 6.56806 6.60429 6.61596 6.70064 6.84599 7.03842 7.14990 7.24433 7.36967 7.68394 7.78607 7.82963 7.96382 8.01025 8.83780 9.49703 10.55587 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.003806 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.398661 B = 7355.249160 C = 8729.821496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.333 6.333 4 C 0.537 3.463 5 O -0.512 6.512 6 C -0.023 4.023 7 C -0.156 4.156 8 C 0.107 3.893 9 N -0.879 5.879 10 C -0.039 4.039 11 N -0.331 5.331 12 C -0.006 4.006 13 C -0.027 4.027 14 C -0.181 4.181 15 C 0.163 3.837 16 O -0.167 6.167 17 C -0.393 4.393 18 H 0.095 0.905 19 C 0.042 3.958 20 N -0.855 5.855 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.227 4.227 26 C -0.055 4.055 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.395 0.605 34 H 0.394 0.606 35 H 0.165 0.835 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.272 0.728 39 H 0.135 0.865 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.484 -1.220 0.035 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.249 6.249 4 C 0.384 3.616 5 O -0.402 6.402 6 C -0.136 4.136 7 C -0.187 4.187 8 C 0.003 3.997 9 N -0.425 5.425 10 C -0.177 4.177 11 N 0.000 5.000 12 C -0.096 4.096 13 C -0.047 4.047 14 C -0.201 4.201 15 C 0.108 3.892 16 O -0.069 6.069 17 C -0.469 4.469 18 H 0.113 0.887 19 C -0.164 4.164 20 N -0.489 5.489 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.247 4.247 26 C -0.074 4.074 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.164 0.836 33 H 0.223 0.777 34 H 0.221 0.779 35 H 0.182 0.818 36 H 0.134 0.866 37 H 0.142 0.858 38 H 0.082 0.918 39 H 0.152 0.848 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 13.728 -1.724 -0.156 13.837 hybrid contribution 0.028 0.592 0.771 0.973 sum 13.755 -1.132 0.615 13.816 Atomic orbital electron populations 1.21811 0.92039 1.02557 1.04463 1.22656 0.95847 0.80838 1.01893 1.86510 1.22947 1.31641 1.83787 1.19819 0.80909 0.88010 0.72897 1.90854 1.60645 1.41163 1.47524 1.19218 0.90579 0.83495 1.20275 1.20668 0.93570 0.93620 1.10845 1.16741 0.86712 0.90438 1.05773 1.41491 1.03850 1.07260 1.89944 1.21311 0.87329 0.93092 1.15963 1.41001 1.04074 1.04415 1.50523 1.17205 0.78786 1.09684 1.03903 1.20348 0.92785 0.95937 0.95616 1.19973 0.92870 1.04202 1.03087 1.19433 0.85001 0.92031 0.92767 1.83978 1.13843 1.62733 1.46311 1.21427 0.90526 1.27457 1.07513 0.88741 1.25328 0.95143 0.97439 0.98450 1.70043 1.05342 1.38838 1.34645 0.85627 0.79358 0.78934 0.79438 1.18968 1.20000 1.19986 1.20995 0.92790 1.06553 1.04320 1.20575 0.94237 0.96918 0.95694 0.91076 0.90654 0.91133 0.91782 0.91858 0.83623 0.77722 0.77886 0.81777 0.86603 0.85784 0.91799 0.84750 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 37.16 0.38 -1.54 16 2 C 0.06 0.84 6.10 37.16 0.23 1.06 16 3 O -0.33 -5.38 5.91 -41.07 -0.24 -5.62 16 4 C 0.54 9.06 7.69 34.01 0.26 9.33 16 5 O -0.51 -9.23 16.66 -19.37 -0.32 -9.55 16 6 C -0.02 -0.37 6.74 -81.94 -0.55 -0.93 16 7 C -0.16 -2.23 10.66 -38.91 -0.41 -2.65 16 8 C 0.11 1.38 7.26 -83.90 -0.61 0.77 16 9 N -0.88 -8.07 9.19 32.30 0.30 -7.77 16 10 C -0.04 -0.54 11.09 -16.48 -0.18 -0.72 16 11 N -0.33 -5.29 2.88 -56.84 -0.16 -5.45 16 12 C -0.01 -0.10 5.49 -83.58 -0.46 -0.56 16 13 C -0.03 -0.48 7.13 -39.42 -0.28 -0.76 16 14 C -0.18 -3.51 9.99 -39.42 -0.39 -3.91 16 15 C 0.16 3.61 6.65 -39.07 -0.26 3.35 16 16 O -0.17 -4.40 9.75 0.06 0.00 -4.40 16 17 C -0.39 -10.25 9.48 30.88 0.29 -9.96 16 18 H 0.10 2.27 5.20 -52.48 -0.27 1.99 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -23.70 13.67 55.48 0.76 -22.94 16 21 Si 0.94 19.38 29.55 -169.99 -5.02 14.35 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 C -0.23 -4.53 9.16 -39.42 -0.36 -4.89 16 26 C -0.05 -0.96 9.65 -39.42 -0.38 -1.34 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.06 0.83 8.13 -51.93 -0.42 0.40 16 32 H 0.15 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.40 2.96 8.96 -40.82 -0.37 2.60 16 34 H 0.39 2.87 8.96 -40.82 -0.37 2.50 16 35 H 0.16 1.92 8.06 -52.48 -0.42 1.49 16 36 H 0.12 1.91 7.16 -52.49 -0.38 1.53 16 37 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.13 2.67 5.63 -52.49 -0.30 2.37 16 40 H 0.11 1.75 8.05 -52.49 -0.42 1.33 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -30.21 348.92 -6.88 -37.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -4.61 Total: 10.80 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.83 Total: -11.77 kcal Atomic # 7 Polarization: -37.05 SS G_CDS: 0.89 Total: -36.16 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.56 Total: -19.57 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.21 -6.88 -37.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.193 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds