Wall clock time and date at job start Tue Mar 31 2020 11:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42892 * 109.47299 * 2 1 4 4 C 1.34911 * 117.00204 * 179.97438 * 3 2 1 5 5 O 1.21639 * 119.99898 * 0.02562 * 4 3 2 6 6 C 1.46387 * 120.00356 * 180.02562 * 4 3 2 7 7 C 1.38118 * 126.19258 * 179.97438 * 6 4 3 8 8 C 1.40157 * 107.14814 * 180.28328 * 7 6 4 9 9 N 1.40684 * 126.08870 * 179.73497 * 8 7 6 10 10 C 1.35936 * 107.82195 * 359.56876 * 8 7 6 11 11 N 1.36109 * 108.77838 * 0.43799 * 10 8 7 12 12 C 1.40064 * 125.68497 * 179.69105 * 11 10 8 13 13 C 1.38929 * 120.00457 * 129.76612 * 12 11 10 14 14 C 1.37982 * 120.00236 * 179.70065 * 13 12 11 15 15 C 1.38930 * 119.99795 * 0.59336 * 14 13 12 16 16 O 1.35759 * 119.99911 * 179.70206 * 15 14 13 17 17 C 1.34817 * 117.00080 * 174.43403 * 16 15 14 18 18 H 1.08007 * 119.99595 * 5.06155 * 17 16 15 19 19 C 1.38637 * 119.99979 * 185.05336 * 17 16 15 20 20 N 1.31565 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99650 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46919 * 120.00512 * 21 19 17 24 24 H 1.48497 * 109.47314 * 240.00413 * 21 19 17 25 25 C 1.38923 * 119.99892 * 359.67995 * 15 14 13 26 26 C 1.37986 * 120.00346 * 0.02562 * 25 15 14 27 27 H 1.08993 * 109.46713 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47044 * 300.00046 * 1 2 3 30 30 H 1.08996 * 109.47193 * 239.99666 * 2 1 3 31 31 H 1.09007 * 109.46890 * 120.00066 * 2 1 3 32 32 H 1.07997 * 126.42929 * 0.02562 * 7 6 4 33 33 H 0.96999 * 120.00197 * 0.02662 * 9 8 7 34 34 H 0.97004 * 119.99680 * 180.02562 * 9 8 7 35 35 H 1.08005 * 125.61051 * 180.13296 * 10 8 7 36 36 H 1.08002 * 119.99705 * 359.97327 * 13 12 11 37 37 H 1.07993 * 120.00292 * 180.27373 * 14 13 12 38 38 H 0.96998 * 119.99657 * 179.97438 * 20 19 17 39 39 H 1.08001 * 119.99380 * 179.97438 * 25 15 14 40 40 H 1.07998 * 120.00043 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3439 1.5240 0.0005 5 8 4.0848 0.5593 0.0005 6 6 3.9035 2.8766 0.0011 7 6 5.2453 3.2042 0.0022 8 6 5.3291 4.6032 0.0091 9 7 6.5135 5.3624 0.0176 10 6 4.0622 5.0960 0.0023 11 7 3.1867 4.0538 0.0012 12 6 1.7901 4.1600 0.0010 13 6 1.0393 3.4461 -0.9245 14 6 -0.3369 3.5459 -0.9207 15 6 -0.9710 4.3699 0.0007 16 8 -2.3247 4.4728 0.0005 17 6 -2.8836 5.1968 0.9911 18 1 -2.2564 5.7302 1.6900 19 6 -4.2634 5.2565 1.1123 20 7 -5.0273 4.6064 0.2610 21 14 -5.0377 6.2590 2.4852 22 1 -3.9691 6.8892 3.3013 23 1 -5.9013 7.3159 1.8998 24 1 -5.8585 5.3694 3.3455 25 6 -0.2199 5.0882 0.9225 26 6 1.1560 4.9837 0.9227 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 6.0744 2.5121 0.0024 33 1 7.3752 4.9169 0.0188 34 1 6.4685 6.3314 0.0223 35 1 3.7944 6.1423 0.0030 36 1 1.5325 2.8095 -1.6442 37 1 -0.9209 2.9875 -1.6373 38 1 -5.9927 4.6479 0.3460 39 1 -0.7129 5.7291 1.6385 40 1 1.7399 5.5418 1.6396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212605988.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:09 Heat of formation + Delta-G solvation = -46.111037 kcal Electronic energy + Delta-G solvation = -26104.381653 eV Core-core repulsion = 22271.514881 eV Total energy + Delta-G solvation = -3832.866772 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71863 -41.12175 -40.65826 -38.38169 -37.65962 -35.43263 -34.27169 -32.67324 -32.33921 -31.92023 -29.97529 -28.50174 -27.23345 -25.32859 -23.84592 -23.58403 -23.09204 -21.18439 -21.08422 -19.94494 -19.65284 -18.67761 -18.11739 -17.72532 -17.33706 -16.64493 -16.31675 -16.07584 -15.83056 -15.66491 -15.54883 -15.37413 -14.90144 -14.63419 -14.51222 -14.40944 -14.19668 -13.63460 -13.54476 -13.21066 -13.11210 -12.99809 -12.98435 -12.68993 -12.50597 -12.37870 -12.09110 -11.81921 -11.71248 -11.47443 -11.20685 -10.81093 -9.89448 -9.71473 -8.96313 -8.48168 -8.06486 -6.15077 -0.07381 0.47004 0.58514 1.38437 1.44655 1.55528 1.66296 1.79943 1.81339 2.16488 2.17352 2.73602 3.10069 3.34721 3.43539 3.70368 3.95545 3.99708 4.01605 4.06802 4.12861 4.32219 4.34104 4.40948 4.55131 4.66050 4.75918 4.87255 4.90105 4.94997 5.06308 5.10553 5.14354 5.34496 5.39308 5.41860 5.55529 5.57890 5.83363 5.95343 6.00178 6.43445 6.70690 6.85460 6.96774 7.32688 7.72702 8.74050 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.003806 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.398661 B = 7355.249160 C = 8729.821496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.058 3.942 3 O -0.345 6.345 4 C 0.535 3.465 5 O -0.531 6.531 6 C -0.050 4.050 7 C -0.150 4.150 8 C 0.117 3.883 9 N -0.866 5.866 10 C -0.041 4.041 11 N -0.345 5.345 12 C 0.020 3.980 13 C -0.022 4.022 14 C -0.179 4.179 15 C 0.134 3.866 16 O -0.218 6.218 17 C -0.412 4.412 18 H 0.107 0.893 19 C -0.017 4.017 20 N -0.914 5.914 21 Si 1.015 2.985 22 H -0.250 1.250 23 H -0.270 1.270 24 H -0.271 1.271 25 C -0.227 4.227 26 C -0.051 4.051 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.158 0.842 33 H 0.406 0.594 34 H 0.406 0.594 35 H 0.188 0.812 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.273 0.727 39 H 0.133 0.867 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.468 -0.202 0.891 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.015 4.015 3 O -0.261 6.261 4 C 0.383 3.617 5 O -0.422 6.422 6 C -0.161 4.161 7 C -0.181 4.181 8 C 0.012 3.988 9 N -0.413 5.413 10 C -0.178 4.178 11 N -0.016 5.016 12 C -0.070 4.070 13 C -0.042 4.042 14 C -0.199 4.199 15 C 0.082 3.918 16 O -0.124 6.124 17 C -0.488 4.488 18 H 0.124 0.876 19 C -0.216 4.216 20 N -0.551 5.551 21 Si 0.834 3.166 22 H -0.173 1.173 23 H -0.195 1.195 24 H -0.196 1.196 25 C -0.247 4.247 26 C -0.070 4.070 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.175 0.825 33 H 0.235 0.765 34 H 0.236 0.764 35 H 0.205 0.795 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.815 -0.691 0.696 16.844 hybrid contribution -0.407 0.194 0.417 0.614 sum 16.408 -0.497 1.113 16.453 Atomic orbital electron populations 1.21801 0.91583 1.03943 1.02970 1.22835 0.96067 0.79944 1.02690 1.86484 1.22845 1.33138 1.83675 1.20002 0.80907 0.88301 0.72504 1.90833 1.60938 1.41755 1.48674 1.19356 0.91350 0.83231 1.22184 1.20952 0.93160 0.94696 1.09331 1.16799 0.87616 0.90053 1.04330 1.41502 1.03150 1.07868 1.88811 1.21784 0.87275 0.93623 1.15077 1.40959 1.03317 1.05094 1.52264 1.17318 0.79997 1.07484 1.02235 1.20455 0.91918 0.95899 0.95889 1.20094 0.93697 1.03584 1.02502 1.19874 0.84253 0.93383 0.94287 1.83958 1.15779 1.64928 1.47697 1.21883 0.91221 1.27754 1.07951 0.87621 1.26517 0.95451 0.98620 1.00990 1.70178 1.05593 1.41917 1.37460 0.84574 0.78523 0.77260 0.76207 1.17273 1.19499 1.19607 1.21074 0.93808 1.06088 1.03695 1.20789 0.93285 0.96958 0.95995 0.91956 0.87907 0.93104 0.90623 0.91384 0.82467 0.76480 0.76438 0.79494 0.85286 0.85693 0.91762 0.84907 0.83805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 10.28 71.98 0.74 -2.92 16 2 C 0.06 1.53 6.10 71.98 0.44 1.97 16 3 O -0.35 -10.86 5.91 -58.26 -0.34 -11.20 16 4 C 0.54 17.35 7.69 69.94 0.54 17.88 16 5 O -0.53 -18.49 16.66 19.38 0.32 -18.16 16 6 C -0.05 -1.52 6.74 40.30 0.27 -1.25 16 7 C -0.15 -3.84 10.66 22.71 0.24 -3.59 16 8 C 0.12 2.56 7.26 37.65 0.27 2.83 16 9 N -0.87 -12.18 9.19 -51.72 -0.48 -12.66 16 10 C -0.04 -0.97 11.09 83.49 0.93 -0.05 16 11 N -0.35 -10.07 2.88 -333.76 -0.96 -11.03 16 12 C 0.02 0.65 5.49 38.16 0.21 0.86 16 13 C -0.02 -0.76 7.13 22.37 0.16 -0.60 16 14 C -0.18 -7.05 9.99 22.37 0.22 -6.82 16 15 C 0.13 6.09 6.65 22.60 0.15 6.24 16 16 O -0.22 -12.14 9.75 -22.70 -0.22 -12.36 16 17 C -0.41 -22.33 9.48 67.92 0.64 -21.69 16 18 H 0.11 5.19 5.20 -2.91 -0.02 5.18 16 19 C -0.02 -0.92 5.49 84.83 0.47 -0.45 16 20 N -0.91 -53.30 13.67 21.61 0.30 -53.00 16 21 Si 1.01 40.49 29.55 68.60 2.03 42.51 16 22 H -0.25 -9.12 7.11 99.48 0.71 -8.41 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 25 C -0.23 -9.01 9.16 22.37 0.20 -8.80 16 26 C -0.05 -1.69 9.65 22.38 0.22 -1.47 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.46 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.07 1.72 8.13 -2.38 -0.02 1.70 16 32 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 33 H 0.41 4.39 8.96 -92.71 -0.83 3.56 16 34 H 0.41 4.10 8.96 -92.71 -0.83 3.27 16 35 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.13 4.09 7.16 -2.91 -0.02 4.07 16 37 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.13 5.27 5.63 -2.91 -0.02 5.25 16 40 H 0.14 3.90 8.05 -2.91 -0.02 3.87 16 Total: -1.00 -68.06 348.92 5.79 -62.27 By element: Atomic # 1 Polarization: 32.06 SS G_CDS: -0.55 Total: 31.50 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: 5.70 Total: -17.86 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.14 Total: -76.70 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -0.24 Total: -41.73 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -68.06 5.79 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212605988.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.157 kcal (2) G-P(sol) polarization free energy of solvation -68.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds