Wall clock time and date at job start Tue Mar 31 2020 11:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07998 * 119.99690 * 94.63616 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00422 * 6.43684 * 11 9 7 13 13 Si 1.86800 * 119.99727 * 186.44435 * 11 9 7 14 14 H 1.48503 * 109.46866 * 269.99449 * 13 11 9 15 15 H 1.48500 * 109.47338 * 29.99176 * 13 11 9 16 16 H 1.48494 * 109.47160 * 149.99846 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35524 * 117.00067 * 149.99907 * 17 7 6 19 19 N 1.31969 * 120.60760 * 359.72001 * 18 17 7 20 20 N 1.28085 * 123.27574 * 179.68723 * 19 18 17 21 21 C 1.31324 * 123.48847 * 0.61260 * 20 19 18 22 22 C 1.40662 * 119.04928 * 359.70528 * 21 20 19 23 23 C 1.40097 * 122.74619 * 179.97438 * 22 21 20 24 24 C 1.36308 * 119.38420 * 180.02562 * 23 22 21 25 25 C 1.39313 * 121.06992 * 359.97438 * 24 23 22 26 26 C 1.36348 * 121.07216 * 0.02562 * 25 24 23 27 27 C 1.39951 * 119.39630 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 29 29 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97002 * 119.99555 * 355.08174 * 12 11 9 36 36 H 1.08002 * 120.47342 * 179.68047 * 21 20 19 37 37 H 1.07998 * 120.30950 * 0.07798 * 23 22 21 38 38 H 1.08008 * 119.46571 * 179.97438 * 24 23 22 39 39 H 1.07999 * 119.46651 * 180.02562 * 25 24 23 40 40 H 1.08000 * 120.30314 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3052 4.8003 0.7456 11 6 6.1922 4.8005 -1.3861 12 7 5.7351 4.1778 -2.4504 13 14 7.0693 6.4398 -1.5678 14 1 6.0790 7.5431 -1.4822 15 1 8.0710 6.5884 -0.4817 16 1 7.7548 6.4912 -2.8840 17 8 5.8952 2.2742 1.2256 18 6 7.0508 1.5674 1.1856 19 7 7.7160 1.4306 0.0541 20 7 8.8149 0.7794 -0.0409 21 6 9.3869 0.1715 0.9730 22 6 8.7770 0.2337 2.2390 23 6 9.3190 -0.3861 3.3725 24 6 8.6697 -0.2821 4.5665 25 6 7.4776 0.4303 4.6769 26 6 6.9225 1.0456 3.5941 27 6 7.5622 0.9595 2.3523 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3438 3.2944 -2.3647 36 1 10.3120 -0.3687 0.8366 37 1 10.2431 -0.9404 3.3012 38 1 9.0861 -0.7597 5.4411 39 1 6.9850 0.4964 5.6358 40 1 5.9977 1.5943 3.6938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226390082.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:13 Heat of formation + Delta-G solvation = -80.899744 kcal Electronic energy + Delta-G solvation = -26360.388121 eV Core-core repulsion = 22526.012797 eV Total energy + Delta-G solvation = -3834.375323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37864 -41.63385 -39.73186 -38.80299 -37.72202 -35.78394 -33.68142 -33.01944 -32.66784 -31.80643 -31.04866 -27.86746 -25.84701 -25.51223 -24.68464 -23.60149 -23.12808 -21.88118 -20.17074 -19.44173 -19.06079 -18.58868 -18.35454 -17.74078 -17.30228 -16.92323 -16.75019 -15.86464 -15.68551 -15.57759 -15.27480 -15.25341 -14.93725 -14.69161 -14.31714 -14.00366 -13.70391 -13.53342 -13.43116 -13.18170 -13.08649 -12.90497 -12.75339 -12.58454 -12.50770 -12.13507 -11.99349 -11.89606 -11.66906 -11.62489 -11.22168 -10.69878 -10.52363 -10.32677 -10.24089 -9.20806 -8.76342 -6.55451 -0.54240 -0.34178 0.85934 1.06950 1.47759 1.53874 1.64276 1.75696 2.02849 2.04907 2.48584 2.97610 3.07842 3.25252 3.42908 3.60430 3.70849 3.74783 3.89712 3.91580 4.01879 4.16905 4.20916 4.24016 4.25649 4.34393 4.52809 4.57936 4.69731 4.80471 4.85074 4.87833 4.95692 5.00761 5.08533 5.26043 5.33691 5.34531 5.42094 5.66448 5.80858 5.86186 6.34110 6.37715 6.65140 7.27700 8.00208 8.59109 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008053 B = 0.006159 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.228261 B = 4545.341908 C = 7075.887929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.048 3.952 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.538 6.538 6 C -0.098 4.098 7 C 0.218 3.782 8 H 0.029 0.971 9 C -0.622 4.622 10 H 0.051 0.949 11 C -0.008 4.008 12 N -0.912 5.912 13 Si 1.117 2.883 14 H -0.257 1.257 15 H -0.282 1.282 16 H -0.283 1.283 17 O -0.305 6.305 18 C 0.309 3.691 19 N -0.367 5.367 20 N -0.276 5.276 21 C 0.036 3.964 22 C -0.073 4.073 23 C -0.090 4.090 24 C -0.082 4.082 25 C -0.099 4.099 26 C -0.095 4.095 27 C -0.121 4.121 28 H 0.068 0.932 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.257 0.743 36 H 0.218 0.782 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.167 0.833 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.797 -10.255 15.716 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.026 4.026 3 O -0.277 6.277 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.135 4.135 7 C 0.163 3.837 8 H 0.046 0.954 9 C -0.659 4.659 10 H 0.069 0.931 11 C -0.210 4.210 12 N -0.547 5.547 13 Si 0.938 3.062 14 H -0.181 1.181 15 H -0.208 1.208 16 H -0.208 1.208 17 O -0.207 6.207 18 C 0.113 3.887 19 N -0.216 5.216 20 N -0.106 5.106 21 C -0.144 4.144 22 C -0.079 4.079 23 C -0.109 4.109 24 C -0.101 4.101 25 C -0.118 4.118 26 C -0.115 4.115 27 C -0.128 4.128 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.235 0.765 37 H 0.200 0.800 38 H 0.199 0.801 39 H 0.185 0.815 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.446 -8.921 13.092 15.849 hybrid contribution -0.684 -1.479 1.634 2.307 sum -1.130 -10.400 14.725 18.063 Atomic orbital electron populations 1.21813 0.89406 1.04625 1.03899 1.23339 0.97777 0.79387 1.02065 1.86539 1.23544 1.33846 1.83813 1.24331 0.80695 0.93111 0.70968 1.90616 1.61262 1.44149 1.46777 1.21869 0.95454 0.89857 1.06369 1.19860 0.89156 0.93204 0.81524 0.95352 1.22277 1.47218 1.00789 0.95609 0.93099 1.27231 0.94556 1.07877 0.91292 1.70891 1.37392 1.14185 1.32247 0.82941 0.76050 0.71235 0.75950 1.18137 1.20783 1.20805 1.85935 1.33869 1.62257 1.38677 1.21880 0.87301 0.87873 0.91628 1.72605 1.05693 1.19544 1.23783 1.72084 1.02933 1.05214 1.30371 1.25110 1.02062 0.98627 0.88583 1.19159 0.93388 0.97955 0.97408 1.21414 1.01341 0.98124 0.90052 1.21642 0.93614 0.95890 0.98955 1.21491 0.96219 0.95269 0.98827 1.21052 0.99913 0.99368 0.91172 1.18566 0.98221 1.02054 0.93971 0.91308 0.87661 0.90825 0.92234 0.91562 0.86165 0.86969 0.93256 0.76517 0.80008 0.80129 0.81536 0.85568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 10.29 71.98 0.74 -1.96 16 2 C 0.05 1.38 6.19 71.98 0.45 1.82 16 3 O -0.36 -13.24 10.22 -51.33 -0.52 -13.76 16 4 C 0.46 20.65 7.84 71.24 0.56 21.20 16 5 O -0.54 -27.13 15.18 26.93 0.41 -26.72 16 6 C -0.10 -4.57 5.38 29.85 0.16 -4.41 16 7 C 0.22 11.98 1.06 29.85 0.03 12.01 16 8 H 0.03 1.80 5.63 -2.38 -0.01 1.79 16 9 C -0.62 -36.08 8.64 25.60 0.22 -35.86 16 10 H 0.05 2.97 7.82 -2.91 -0.02 2.95 16 11 C -0.01 -0.48 5.45 84.66 0.46 -0.02 16 12 N -0.91 -56.07 13.63 21.45 0.29 -55.78 16 13 Si 1.12 51.56 29.91 68.60 2.05 53.61 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 17 O -0.30 -15.97 8.43 -74.97 -0.63 -16.60 16 18 C 0.31 15.63 7.58 85.39 0.65 16.28 16 19 N -0.37 -20.14 9.79 -169.56 -1.66 -21.80 16 20 N -0.28 -13.01 11.39 -56.24 -0.64 -13.65 16 21 C 0.04 1.22 11.20 85.36 0.96 2.18 16 22 C -0.07 -2.30 5.75 -21.31 -0.12 -2.42 16 23 C -0.09 -1.70 9.84 22.27 0.22 -1.48 16 24 C -0.08 -1.26 9.95 22.08 0.22 -1.04 16 25 C -0.10 -1.97 9.95 22.09 0.22 -1.75 16 26 C -0.10 -2.98 9.63 22.24 0.21 -2.76 16 27 C -0.12 -4.77 5.76 -21.23 -0.12 -4.89 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 33 H 0.12 5.03 8.14 -2.39 -0.02 5.01 16 34 H 0.11 5.37 7.84 -2.39 -0.02 5.35 16 35 H 0.26 16.25 6.39 -92.71 -0.59 15.66 16 36 H 0.22 4.77 8.06 -2.91 -0.02 4.75 16 37 H 0.18 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.18 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.13 4.08 7.76 -2.91 -0.02 4.05 16 Total: -1.00 -85.40 350.89 5.39 -80.01 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 1.24 Total: 17.78 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 4.85 Total: -3.09 kcal Atomic # 7 Polarization: -89.22 SS G_CDS: -2.01 Total: -91.22 kcal Atomic # 8 Polarization: -56.33 SS G_CDS: -0.75 Total: -57.08 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -85.40 5.39 -80.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226390082.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.887 kcal (2) G-P(sol) polarization free energy of solvation -85.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds