Wall clock time and date at job start Tue Mar 31 2020 11:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34732 * 116.99723 * 2 1 4 4 O 1.21486 * 119.99892 * 0.02562 * 3 2 1 5 5 C 1.47589 * 119.99860 * 179.97438 * 3 2 1 6 6 C 1.41115 * 125.98507 * 180.02562 * 5 3 2 7 7 C 1.35575 * 107.79391 * 179.97438 * 6 5 3 8 8 O 1.35772 * 126.07594 * 180.02562 * 7 6 5 9 9 C 1.42893 * 116.99929 * 174.57566 * 8 7 6 10 10 H 1.08997 * 109.47739 * 333.99106 * 9 8 7 11 11 C 1.50704 * 109.46790 * 93.98583 * 9 8 7 12 12 H 1.07998 * 120.00444 * 215.42825 * 11 9 8 13 13 C 1.37878 * 119.99870 * 35.42360 * 11 9 8 14 14 N 1.31519 * 119.99805 * 195.27612 * 13 11 9 15 15 Si 1.86801 * 120.00116 * 15.28172 * 13 11 9 16 16 H 1.48495 * 109.47133 * 83.97441 * 15 13 11 17 17 H 1.48502 * 109.46885 * 203.97525 * 15 13 11 18 18 H 1.48504 * 109.46794 * 323.97593 * 15 13 11 19 19 C 1.50697 * 109.47387 * 213.98103 * 9 8 7 20 20 C 1.38235 * 120.00177 * 328.30827 * 19 9 8 21 21 C 1.38230 * 119.99851 * 179.78726 * 20 19 9 22 22 C 1.38234 * 120.00212 * 0.43198 * 21 20 19 23 23 C 1.38231 * 119.99992 * 359.81876 * 22 21 20 24 24 C 1.38233 * 119.99945 * 359.97438 * 23 22 21 25 25 N 1.35855 * 107.84643 * 0.26404 * 7 6 5 26 26 C 1.46501 * 125.94553 * 179.72370 * 25 7 6 27 27 N 1.31908 * 125.99177 * 359.97438 * 5 3 2 28 28 H 1.08996 * 109.47142 * 60.00087 * 1 2 3 29 29 H 1.09007 * 109.46425 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46864 * 299.99507 * 1 2 3 31 31 H 1.07995 * 126.10019 * 0.02562 * 6 5 3 32 32 H 0.97004 * 119.99531 * 180.02562 * 14 13 11 33 33 H 1.08000 * 119.99588 * 359.97438 * 20 19 9 34 34 H 1.08006 * 119.99764 * 180.26952 * 21 20 19 35 35 H 1.08001 * 119.99633 * 179.83366 * 22 21 20 36 36 H 1.07997 * 120.00046 * 179.97438 * 23 22 21 37 37 H 1.08001 * 119.99959 * 179.97438 * 24 23 22 38 38 H 1.08991 * 109.47207 * 83.68700 * 26 25 7 39 39 H 1.08997 * 109.46777 * 203.69008 * 26 25 7 40 40 H 1.09001 * 109.46933 * 323.68479 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2005 0.0000 4 8 1.4019 2.2193 0.0005 5 6 3.5375 1.2778 0.0006 6 6 4.3058 2.4615 0.0011 7 6 5.6141 2.1063 0.0021 8 8 6.6732 2.9558 0.0034 9 6 7.9722 2.3729 0.1246 10 1 7.8948 1.4172 0.6430 11 6 8.5546 2.1540 -1.2480 12 1 9.1733 1.2900 -1.4406 13 6 8.2975 3.0568 -2.2579 14 7 8.5399 2.7308 -3.5088 15 14 7.6050 4.7429 -1.8496 16 1 8.7147 5.6573 -1.4789 17 1 6.8915 5.2850 -3.0338 18 1 6.6581 4.6267 -0.7114 19 6 8.8670 3.2984 0.9081 20 6 8.6853 4.6665 0.8291 21 6 9.5033 5.5152 1.5512 22 6 10.5087 4.9962 2.3454 23 6 10.6937 3.6284 2.4204 24 6 9.8730 2.7795 1.7016 25 7 5.6771 0.7492 -0.0038 26 6 6.9017 -0.0549 -0.0107 27 7 4.3675 0.2526 0.0016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 3.9202 3.4703 0.0016 32 1 8.3594 3.3660 -4.2192 33 1 7.9024 5.0720 0.2055 34 1 9.3585 6.5839 1.4928 35 1 11.1495 5.6595 2.9074 36 1 11.4795 3.2230 3.0405 37 1 10.0179 1.7108 1.7599 38 1 7.2704 -0.1641 1.0092 39 1 6.6877 -1.0392 -0.4271 40 1 7.6582 0.4405 -0.6194 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226426096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:58 Heat of formation + Delta-G solvation = 34.723976 kcal Electronic energy + Delta-G solvation = -26493.437038 eV Core-core repulsion = 22664.075536 eV Total energy + Delta-G solvation = -3829.361502 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.19479 -40.00654 -39.02365 -37.38424 -36.30550 -33.41594 -32.81909 -31.57533 -30.51079 -29.24299 -28.15042 -27.56303 -26.26415 -23.50625 -23.20513 -22.43489 -20.94258 -20.77859 -19.84006 -18.03042 -17.19954 -16.98409 -16.59835 -16.30466 -15.80093 -15.63117 -15.11966 -14.97147 -14.73111 -14.25146 -13.84699 -13.56313 -13.42461 -13.30753 -13.25989 -12.95462 -12.60834 -12.35886 -12.17048 -12.10234 -12.04696 -11.40609 -11.02945 -10.85330 -10.76750 -10.67852 -10.57948 -10.37702 -10.11089 -9.93408 -9.05931 -8.87177 -8.66649 -8.39529 -8.13241 -7.73669 -6.54801 -4.63753 1.44787 1.86053 1.87771 2.44191 2.63423 2.87916 3.18858 3.23102 3.32212 3.47304 4.00199 4.18969 4.31315 4.61473 4.78087 5.07314 5.15161 5.25768 5.32588 5.35714 5.45226 5.49946 5.57251 5.65321 5.71530 5.79222 5.95201 6.01964 6.08072 6.24861 6.26940 6.36525 6.44451 6.46324 6.64305 6.78777 6.90622 6.94686 6.98325 7.16394 7.47351 7.66040 7.83106 7.97906 8.13584 8.41421 9.08113 10.52939 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016328 B = 0.004249 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.479584 B = 6588.103462 C = 6908.824168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.344 6.344 3 C 0.559 3.441 4 O -0.498 6.498 5 C 0.052 3.948 6 C -0.269 4.269 7 C 0.307 3.693 8 O -0.273 6.273 9 C 0.177 3.823 10 H 0.071 0.929 11 C -0.564 4.564 12 H 0.095 0.905 13 C 0.100 3.900 14 N -0.858 5.858 15 Si 0.863 3.137 16 H -0.274 1.274 17 H -0.294 1.294 18 H -0.198 1.198 19 C -0.045 4.045 20 C -0.136 4.136 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.120 4.120 24 C -0.119 4.119 25 N -0.369 5.369 26 C 0.058 3.942 27 N -0.244 5.244 28 H 0.063 0.937 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.273 0.727 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.118 0.882 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -2.343 9.066 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.260 6.260 3 C 0.401 3.599 4 O -0.383 6.383 5 C -0.111 4.111 6 C -0.299 4.299 7 C 0.139 3.861 8 O -0.179 6.179 9 C 0.123 3.877 10 H 0.089 0.911 11 C -0.598 4.598 12 H 0.113 0.887 13 C -0.110 4.110 14 N -0.490 5.490 15 Si 0.696 3.304 16 H -0.200 1.200 17 H -0.222 1.222 18 H -0.126 1.126 19 C -0.046 4.046 20 C -0.153 4.153 21 C -0.136 4.136 22 C -0.161 4.161 23 C -0.138 4.138 24 C -0.137 4.137 25 N -0.167 5.167 26 C -0.081 4.081 27 N -0.077 5.077 28 H 0.082 0.918 29 H 0.120 0.880 30 H 0.082 0.918 31 H 0.175 0.825 32 H 0.083 0.917 33 H 0.143 0.857 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.541 -3.002 8.823 10.367 hybrid contribution -0.129 1.672 -0.153 1.684 sum -4.670 -1.330 8.670 9.937 Atomic orbital electron populations 1.23292 0.76251 1.03680 1.02577 1.86664 1.23151 1.32149 1.84014 1.19693 0.86439 0.81457 0.72327 1.90839 1.65582 1.36103 1.45756 1.20324 0.90309 0.92596 1.07909 1.20093 0.87952 0.98941 1.22910 1.19908 0.90504 0.80703 0.94989 1.87259 1.14427 1.29594 1.86662 1.20174 0.77765 0.92723 0.97046 0.91116 1.20948 1.35955 1.12068 0.90857 0.88744 1.24899 0.92731 0.99006 0.94315 1.69943 1.43892 1.35722 0.99456 0.87560 0.80562 0.83769 0.78536 1.20038 1.22201 1.12626 1.20175 0.96915 0.94377 0.93100 1.21572 1.00510 0.93660 0.99601 1.21038 0.95950 0.99196 0.97422 1.20945 0.99045 0.95273 1.00825 1.20965 0.99301 0.93577 0.99943 1.20736 0.96147 0.99504 0.97291 1.49085 1.05699 1.04173 1.57693 1.23071 0.83895 0.97411 1.03739 1.77685 0.86473 1.20332 1.23201 0.91791 0.88027 0.91837 0.82450 0.91690 0.85684 0.86865 0.86885 0.86628 0.86393 0.91346 0.89625 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.44 16 2 O -0.34 -5.20 10.57 -40.58 -0.43 -5.63 16 3 C 0.56 9.80 7.97 34.55 0.28 10.07 16 4 O -0.50 -9.23 16.69 -19.26 -0.32 -9.55 16 5 C 0.05 1.01 7.12 -82.93 -0.59 0.42 16 6 C -0.27 -5.40 10.59 -39.44 -0.42 -5.82 16 7 C 0.31 6.43 7.75 -16.72 -0.13 6.30 16 8 O -0.27 -5.93 4.73 -19.03 -0.09 -6.02 16 9 C 0.18 3.67 2.02 -29.03 -0.06 3.61 16 10 H 0.07 1.31 3.95 -51.93 -0.20 1.11 16 11 C -0.56 -13.61 7.51 -34.44 -0.26 -13.87 16 12 H 0.09 2.38 7.64 -52.49 -0.40 1.98 16 13 C 0.10 2.62 5.40 -17.82 -0.10 2.53 16 14 N -0.86 -23.89 13.96 55.43 0.77 -23.12 16 15 Si 0.86 20.28 22.58 -169.99 -3.84 16.44 16 16 H -0.27 -6.34 6.64 56.52 0.38 -5.96 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.20 -4.42 4.09 56.52 0.23 -4.19 16 19 C -0.05 -0.90 4.91 -104.62 -0.51 -1.41 16 20 C -0.14 -2.73 7.21 -39.59 -0.29 -3.02 16 21 C -0.12 -2.04 10.05 -39.59 -0.40 -2.43 16 22 C -0.14 -2.19 10.05 -39.59 -0.40 -2.58 16 23 C -0.12 -1.82 10.05 -39.59 -0.40 -2.22 16 24 C -0.12 -2.03 9.70 -39.58 -0.38 -2.41 16 25 N -0.37 -7.21 4.04 -68.19 -0.28 -7.49 16 26 C 0.06 0.96 9.42 59.85 0.56 1.52 16 27 N -0.24 -4.77 12.61 33.33 0.42 -4.35 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.16 2.98 8.06 -52.49 -0.42 2.56 16 32 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.13 2.63 2.87 -52.49 -0.15 2.48 16 34 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 35 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.07 0.94 7.44 -51.93 -0.39 0.56 16 39 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.15 2.73 3.54 -51.93 -0.18 2.54 16 LS Contribution 329.89 15.07 4.97 4.97 Total: -1.00 -30.03 329.89 -5.27 -35.30 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.46 Total: 7.32 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -2.02 Total: -7.88 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.92 Total: -34.95 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.84 Total: -21.20 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -3.84 Total: 16.44 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.03 -5.27 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226426096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.022 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds