Wall clock time and date at job start Tue Mar 31 2020 11:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47101 * 2 1 4 4 C 1.34230 * 117.00218 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99588 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00286 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.46980 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47217 * 54.99862 * 7 6 4 9 9 C 1.50697 * 109.47010 * 175.00045 * 7 6 4 10 10 H 1.07999 * 120.00138 * 239.99822 * 9 7 6 11 11 C 1.37880 * 120.00214 * 60.00031 * 9 7 6 12 12 N 1.31518 * 119.99787 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00110 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46890 * 89.99887 * 13 11 9 15 15 H 1.48495 * 109.46986 * 209.99545 * 13 11 9 16 16 H 1.48491 * 109.47270 * 330.00072 * 13 11 9 17 17 O 1.42905 * 109.47068 * 295.00014 * 7 6 4 18 18 C 1.35795 * 116.99718 * 155.80385 * 17 7 6 19 19 C 1.36622 * 120.21301 * 5.48273 * 18 17 7 20 20 C 1.39191 * 120.90639 * 180.26151 * 19 18 17 21 21 C 1.36170 * 121.05281 * 359.47712 * 20 19 18 22 22 C 1.40499 * 119.83899 * 0.25225 * 21 20 19 23 23 N 1.33788 * 121.10480 * 180.02562 * 22 21 20 24 24 C 1.31356 * 119.69622 * 179.97438 * 23 22 21 25 25 C 1.39634 * 120.70918 * 359.97438 * 24 23 22 26 26 N 1.31360 * 120.70692 * 0.02562 * 25 24 23 27 27 C 1.33623 * 119.71846 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46643 * 59.99735 * 1 2 3 29 29 H 1.08997 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46949 * 300.00071 * 1 2 3 31 31 H 1.08999 * 109.46949 * 239.99929 * 2 1 3 32 32 H 1.08995 * 109.47282 * 120.00080 * 2 1 3 33 33 H 1.08996 * 109.46933 * 59.99740 * 6 4 3 34 34 H 1.08996 * 109.47222 * 299.99932 * 6 4 3 35 35 H 0.97000 * 119.99648 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.54660 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.47249 * 179.75085 * 20 19 18 38 38 H 1.07999 * 120.07831 * 180.27905 * 21 20 19 39 39 H 1.08002 * 119.64582 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.64645 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 -0.0001 8 1 5.7806 2.2500 -0.8422 9 6 6.0244 4.2445 -0.1234 10 1 6.6591 4.4933 -0.9610 11 6 5.7409 5.1962 0.8332 12 7 4.9675 4.8934 1.8530 13 14 6.4551 6.9155 0.6807 14 1 5.5209 7.7728 -0.0924 15 1 6.6503 7.4922 2.0351 16 1 7.7616 6.8482 -0.0218 17 8 5.8946 2.2632 1.2207 18 6 7.1107 1.6591 1.2041 19 6 7.8997 1.7326 0.0911 20 6 9.1462 1.1143 0.0564 21 6 9.6200 0.4278 1.1328 22 6 8.8423 0.3329 2.2990 23 7 9.2831 -0.3346 3.3714 24 6 8.5332 -0.4054 4.4475 25 6 7.2801 0.2094 4.4851 26 7 6.8258 0.8704 3.4448 27 6 7.5694 0.9559 2.3379 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5852 3.4690 0.8904 34 1 3.5844 3.4701 -0.8895 35 1 4.7677 5.5630 2.5257 36 1 7.5498 2.2747 -0.7750 37 1 9.7492 1.1838 -0.8370 38 1 10.5915 -0.0422 1.0902 39 1 8.8897 -0.9449 5.3125 40 1 6.6779 0.1407 5.3789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226858015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:57 Heat of formation + Delta-G solvation = -56.856718 kcal Electronic energy + Delta-G solvation = -26524.817442 eV Core-core repulsion = 22691.484703 eV Total energy + Delta-G solvation = -3833.332739 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86816 -39.82631 -38.33791 -36.26823 -35.73303 -34.15071 -33.09593 -31.61006 -30.57212 -30.18802 -28.68261 -26.45150 -24.76268 -23.77214 -23.30492 -22.11591 -21.09433 -20.04036 -18.27924 -17.82806 -17.18739 -16.69716 -16.41360 -16.16215 -15.70478 -15.33123 -14.75917 -14.61259 -14.37467 -14.16437 -13.84871 -13.51036 -13.43825 -12.97892 -12.58635 -12.39360 -12.17744 -11.81835 -11.59653 -11.40106 -11.28607 -11.24845 -11.13865 -11.07998 -11.03503 -10.91353 -10.70842 -10.38901 -10.15302 -9.75303 -9.48026 -9.18154 -8.82303 -8.63681 -8.48867 -7.06073 -6.29209 -4.51608 0.90491 1.05585 2.60390 2.99104 3.14455 3.24248 3.26061 3.30693 3.42671 4.14422 4.20605 4.49398 4.61202 4.66329 4.90881 5.07487 5.07996 5.14450 5.30166 5.36996 5.41126 5.46400 5.56727 5.78373 5.83787 5.89022 5.90355 6.05346 6.07447 6.25341 6.31857 6.38753 6.63045 6.66653 6.80396 6.96007 6.99556 7.22057 7.27513 7.59404 7.75820 7.77840 8.18407 8.41312 8.50196 8.74993 9.26428 10.71343 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008437 B = 0.006160 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.765945 B = 4544.462151 C = 6592.026944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.515 6.515 6 C -0.100 4.100 7 C 0.218 3.782 8 H 0.037 0.963 9 C -0.565 4.565 10 H 0.071 0.929 11 C 0.086 3.914 12 N -0.851 5.851 13 Si 0.897 3.103 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.270 1.270 17 O -0.258 6.258 18 C 0.233 3.767 19 C -0.234 4.234 20 C -0.036 4.036 21 C -0.175 4.175 22 C 0.116 3.884 23 N -0.444 5.444 24 C 0.078 3.922 25 C 0.030 3.970 26 N -0.379 5.379 27 C 0.048 3.952 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.142 0.858 34 H 0.105 0.895 35 H 0.269 0.731 36 H 0.145 0.855 37 H 0.126 0.874 38 H 0.128 0.872 39 H 0.166 0.834 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.358 -7.455 -0.398 7.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.137 4.137 7 C 0.164 3.836 8 H 0.055 0.945 9 C -0.601 4.601 10 H 0.089 0.911 11 C -0.123 4.123 12 N -0.485 5.485 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.209 1.209 16 H -0.195 1.195 17 O -0.166 6.166 18 C 0.180 3.820 19 C -0.255 4.255 20 C -0.056 4.056 21 C -0.194 4.194 22 C -0.008 4.008 23 N -0.160 5.160 24 C -0.098 4.098 25 C -0.145 4.145 26 N -0.093 5.093 27 C -0.079 4.079 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.162 0.838 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.183 0.817 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.426 -7.577 -0.291 7.716 hybrid contribution 0.395 0.802 0.043 0.895 sum -1.032 -6.775 -0.249 6.858 Atomic orbital electron populations 1.21777 0.93266 1.02332 1.03333 1.22854 0.94863 0.81748 1.02030 1.86566 1.26075 1.31012 1.84724 1.24857 0.79553 0.94255 0.71197 1.90599 1.60228 1.43640 1.45806 1.21809 0.96252 0.88280 1.07408 1.19971 0.89063 0.92769 0.81798 0.94548 1.21372 1.33392 0.94674 1.10708 0.91091 1.25068 0.93751 0.99114 0.94343 1.69869 1.33679 1.34456 1.10505 0.86513 0.79854 0.83528 0.77781 1.20118 1.20903 1.19494 1.86342 1.27657 1.63519 1.39058 1.18488 0.86888 0.86371 0.90261 1.21045 0.96364 1.07778 1.00269 1.20689 0.94625 0.92881 0.97388 1.20291 1.00841 1.06223 0.92082 1.19267 0.92301 0.95187 0.94041 1.68705 1.33111 1.14703 0.99442 1.23898 0.92352 0.96775 0.96730 1.23832 0.95710 0.96736 0.98189 1.68652 1.32083 1.10095 0.98432 1.19077 0.93325 1.01873 0.93599 0.91713 0.90840 0.91568 0.91910 0.91744 0.84086 0.87736 0.92086 0.83774 0.85615 0.85431 0.81723 0.81774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 37.16 0.38 -1.26 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.77 10.22 -39.26 -0.40 -7.17 16 4 C 0.46 9.69 7.84 36.01 0.28 9.98 16 5 O -0.52 -12.05 15.17 -24.06 -0.36 -12.41 16 6 C -0.10 -2.19 5.22 -27.88 -0.15 -2.34 16 7 C 0.22 5.18 1.35 -27.88 -0.04 5.14 16 8 H 0.04 0.84 6.18 -51.93 -0.32 0.52 16 9 C -0.56 -13.96 7.92 -34.44 -0.27 -14.23 16 10 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 11 C 0.09 2.16 5.24 -17.82 -0.09 2.07 16 12 N -0.85 -22.34 10.93 55.43 0.61 -21.73 16 13 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 O -0.26 -6.60 8.23 -33.55 -0.28 -6.87 16 18 C 0.23 5.52 6.61 -39.09 -0.26 5.26 16 19 C -0.23 -4.84 8.64 -39.81 -0.34 -5.19 16 20 C -0.04 -0.62 9.94 -39.97 -0.40 -1.01 16 21 C -0.17 -3.09 9.98 -39.47 -0.39 -3.49 16 22 C 0.12 2.32 6.59 -84.81 -0.56 1.76 16 23 N -0.44 -8.01 10.47 -10.82 -0.11 -8.13 16 24 C 0.08 1.17 11.21 -17.23 -0.19 0.97 16 25 C 0.03 0.50 11.21 -17.23 -0.19 0.31 16 26 N -0.38 -8.31 10.26 -10.71 -0.11 -8.42 16 27 C 0.05 1.08 6.60 -84.66 -0.56 0.52 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.14 3.39 6.22 -51.93 -0.32 3.07 16 34 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 35 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.14 2.94 5.58 -52.48 -0.29 2.65 16 37 H 0.13 1.70 8.06 -52.48 -0.42 1.27 16 38 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 39 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.17 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.45 346.12 -7.73 -39.18 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -4.71 Total: 6.04 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.55 Total: -0.41 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.38 Total: -38.28 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -1.04 Total: -26.46 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.45 -7.73 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226858015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.678 kcal (2) G-P(sol) polarization free energy of solvation -31.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds