Wall clock time and date at job start Tue Mar 31 2020 11:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45197 * 109.47101 * 2 1 4 4 C 1.34230 * 117.00218 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99588 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00286 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.46980 * 179.97438 * 6 4 3 8 8 H 1.09002 * 109.47217 * 54.99862 * 7 6 4 9 9 C 1.50697 * 109.47010 * 175.00045 * 7 6 4 10 10 H 1.07999 * 120.00138 * 239.99822 * 9 7 6 11 11 C 1.37880 * 120.00214 * 60.00031 * 9 7 6 12 12 N 1.31518 * 119.99787 * 359.97438 * 11 9 7 13 13 Si 1.86800 * 120.00110 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.46890 * 89.99887 * 13 11 9 15 15 H 1.48495 * 109.46986 * 209.99545 * 13 11 9 16 16 H 1.48491 * 109.47270 * 330.00072 * 13 11 9 17 17 O 1.42905 * 109.47068 * 295.00014 * 7 6 4 18 18 C 1.35795 * 116.99718 * 155.80385 * 17 7 6 19 19 C 1.36622 * 120.21301 * 5.48273 * 18 17 7 20 20 C 1.39191 * 120.90639 * 180.26151 * 19 18 17 21 21 C 1.36170 * 121.05281 * 359.47712 * 20 19 18 22 22 C 1.40499 * 119.83899 * 0.25225 * 21 20 19 23 23 N 1.33788 * 121.10480 * 180.02562 * 22 21 20 24 24 C 1.31356 * 119.69622 * 179.97438 * 23 22 21 25 25 C 1.39634 * 120.70918 * 359.97438 * 24 23 22 26 26 N 1.31360 * 120.70692 * 0.02562 * 25 24 23 27 27 C 1.33623 * 119.71846 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.46643 * 59.99735 * 1 2 3 29 29 H 1.08997 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46949 * 300.00071 * 1 2 3 31 31 H 1.08999 * 109.46949 * 239.99929 * 2 1 3 32 32 H 1.08995 * 109.47282 * 120.00080 * 2 1 3 33 33 H 1.08996 * 109.46933 * 59.99740 * 6 4 3 34 34 H 1.08996 * 109.47222 * 299.99932 * 6 4 3 35 35 H 0.97000 * 119.99648 * 180.02562 * 12 11 9 36 36 H 1.08005 * 119.54660 * 0.02562 * 19 18 17 37 37 H 1.08007 * 119.47249 * 179.75085 * 20 19 18 38 38 H 1.07999 * 120.07831 * 180.27905 * 21 20 19 39 39 H 1.08002 * 119.64582 * 179.97438 * 24 23 22 40 40 H 1.07996 * 119.64645 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 6 5.4487 2.8573 -0.0001 8 1 5.7806 2.2500 -0.8422 9 6 6.0244 4.2445 -0.1234 10 1 6.6591 4.4933 -0.9610 11 6 5.7409 5.1962 0.8332 12 7 4.9675 4.8934 1.8530 13 14 6.4551 6.9155 0.6807 14 1 5.5209 7.7728 -0.0924 15 1 6.6503 7.4922 2.0351 16 1 7.7616 6.8482 -0.0218 17 8 5.8946 2.2632 1.2207 18 6 7.1107 1.6591 1.2041 19 6 7.8997 1.7326 0.0911 20 6 9.1462 1.1143 0.0564 21 6 9.6200 0.4278 1.1328 22 6 8.8423 0.3329 2.2990 23 7 9.2831 -0.3346 3.3714 24 6 8.5332 -0.4054 4.4475 25 6 7.2801 0.2094 4.4851 26 7 6.8258 0.8704 3.4448 27 6 7.5694 0.9559 2.3379 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.5852 3.4690 0.8904 34 1 3.5844 3.4701 -0.8895 35 1 4.7677 5.5630 2.5257 36 1 7.5498 2.2747 -0.7750 37 1 9.7492 1.1838 -0.8370 38 1 10.5915 -0.0422 1.0902 39 1 8.8897 -0.9449 5.3125 40 1 6.6779 0.1407 5.3789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226858015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:56 Heat of formation + Delta-G solvation = -76.241595 kcal Electronic energy + Delta-G solvation = -26525.658034 eV Core-core repulsion = 22691.484703 eV Total energy + Delta-G solvation = -3834.173331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29999 -41.45610 -39.94247 -37.78684 -37.29483 -35.68365 -34.83942 -32.92822 -32.12416 -31.63261 -30.21291 -28.25310 -26.19953 -25.24498 -24.70614 -23.54996 -22.63780 -21.66519 -19.83172 -19.31717 -18.84797 -18.20763 -18.04070 -17.65434 -17.28873 -16.96043 -16.45786 -16.17008 -15.75517 -15.60428 -15.22241 -15.12546 -14.81060 -14.36172 -13.96161 -13.85275 -13.68033 -13.31745 -13.05362 -12.85044 -12.82868 -12.70890 -12.63304 -12.61973 -12.53365 -12.47102 -12.38598 -12.06443 -11.53074 -11.48259 -11.25153 -10.93506 -10.70819 -10.03879 -9.89904 -8.66107 -8.17966 -6.46339 -0.50121 -0.34814 1.12432 1.29366 1.40309 1.43586 1.51971 1.81515 2.02471 2.36608 2.55260 3.14529 3.14994 3.24911 3.30235 3.56441 3.92135 3.97551 3.99784 4.08765 4.11191 4.30196 4.31723 4.36328 4.42678 4.50816 4.55128 4.62513 4.84908 4.90565 4.94265 5.01932 5.11648 5.25018 5.33929 5.38535 5.49024 5.54239 5.67248 5.83273 5.91955 6.37132 6.52261 6.79251 6.85708 7.03846 7.35001 8.81178 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008437 B = 0.006160 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3317.765945 B = 4544.462151 C = 6592.026944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.366 6.366 4 C 0.463 3.537 5 O -0.541 6.541 6 C -0.096 4.096 7 C 0.218 3.782 8 H 0.031 0.969 9 C -0.572 4.572 10 H 0.071 0.929 11 C 0.045 3.955 12 N -0.879 5.879 13 Si 0.954 3.046 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.269 1.269 17 O -0.287 6.287 18 C 0.185 3.815 19 C -0.237 4.237 20 C -0.037 4.037 21 C -0.162 4.162 22 C 0.095 3.905 23 N -0.452 5.452 24 C 0.095 3.905 25 C 0.042 3.958 26 N -0.437 5.437 27 C 0.014 3.986 28 H 0.072 0.928 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.266 0.734 36 H 0.137 0.863 37 H 0.168 0.832 38 H 0.159 0.841 39 H 0.224 0.776 40 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.394 -8.629 0.146 8.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.024 4.024 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.431 6.431 6 C -0.134 4.134 7 C 0.164 3.836 8 H 0.049 0.951 9 C -0.608 4.608 10 H 0.089 0.911 11 C -0.161 4.161 12 N -0.514 5.514 13 Si 0.779 3.221 14 H -0.188 1.188 15 H -0.216 1.216 16 H -0.194 1.194 17 O -0.196 6.196 18 C 0.133 3.867 19 C -0.258 4.258 20 C -0.056 4.056 21 C -0.182 4.182 22 C -0.027 4.027 23 N -0.167 5.167 24 C -0.081 4.081 25 C -0.134 4.134 26 N -0.151 5.151 27 C -0.110 4.110 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.076 0.924 36 H 0.155 0.845 37 H 0.186 0.814 38 H 0.177 0.823 39 H 0.241 0.759 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.465 -8.745 0.197 8.760 hybrid contribution 0.126 0.956 0.041 0.965 sum -0.338 -7.789 0.238 7.800 Atomic orbital electron populations 1.21806 0.89754 1.04465 1.03753 1.23266 0.97562 0.79731 1.01889 1.86543 1.24271 1.33476 1.84044 1.24591 0.80358 0.93550 0.70628 1.90580 1.61090 1.44279 1.47137 1.21668 0.95668 0.88911 1.07127 1.19923 0.89841 0.92171 0.81642 0.95111 1.21584 1.33237 0.95398 1.10624 0.91061 1.25717 0.94091 1.02182 0.94077 1.70011 1.35021 1.35194 1.11182 0.85627 0.79335 0.79877 0.77291 1.18776 1.21617 1.19395 1.86268 1.29136 1.64946 1.39286 1.18971 0.87075 0.88468 0.92167 1.21201 0.97526 1.07807 0.99229 1.21056 0.93567 0.91967 0.99045 1.20729 1.01466 1.04876 0.91114 1.19580 0.91839 0.95680 0.95648 1.68823 1.33480 1.14694 0.99745 1.24820 0.91057 0.94941 0.97257 1.24690 0.96654 0.94213 0.97878 1.68602 1.33849 1.12820 0.99847 1.19265 0.94709 1.03178 0.93841 0.90862 0.87789 0.91562 0.91412 0.92647 0.86197 0.85997 0.92432 0.84512 0.81437 0.82298 0.75918 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 10.29 71.98 0.74 -2.10 16 2 C 0.05 1.45 6.19 71.98 0.45 1.90 16 3 O -0.37 -13.80 10.22 -51.42 -0.53 -14.33 16 4 C 0.46 20.50 7.84 71.24 0.56 21.05 16 5 O -0.54 -26.50 15.17 27.04 0.41 -26.09 16 6 C -0.10 -4.43 5.22 29.85 0.16 -4.28 16 7 C 0.22 10.93 1.35 29.85 0.04 10.97 16 8 H 0.03 1.52 6.18 -2.39 -0.01 1.50 16 9 C -0.57 -29.30 7.92 25.60 0.20 -29.09 16 10 H 0.07 3.52 7.81 -2.91 -0.02 3.50 16 11 C 0.04 2.31 5.24 84.65 0.44 2.75 16 12 N -0.88 -48.03 10.93 21.45 0.23 -47.79 16 13 Si 0.95 41.21 29.54 68.60 2.03 43.24 16 14 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 17 O -0.29 -15.53 8.23 -77.44 -0.64 -16.16 16 18 C 0.18 9.16 6.61 22.59 0.15 9.31 16 19 C -0.24 -10.13 8.64 22.12 0.19 -9.94 16 20 C -0.04 -1.24 9.94 22.02 0.22 -1.02 16 21 C -0.16 -5.50 9.98 22.34 0.22 -5.27 16 22 C 0.09 3.73 6.59 40.27 0.27 3.99 16 23 N -0.45 -15.23 10.47 -188.15 -1.97 -17.20 16 24 C 0.10 2.54 11.21 85.10 0.95 3.50 16 25 C 0.04 1.31 11.21 85.10 0.95 2.26 16 26 N -0.44 -19.53 10.26 -187.79 -1.93 -21.46 16 27 C 0.01 0.67 6.60 40.44 0.27 0.93 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.93 8.13 -2.39 -0.02 1.91 16 32 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 33 H 0.12 6.11 6.22 -2.39 -0.01 6.10 16 34 H 0.12 4.98 8.14 -2.39 -0.02 4.96 16 35 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 36 H 0.14 5.86 5.58 -2.91 -0.02 5.85 16 37 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 38 H 0.16 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.22 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.21 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -73.34 346.12 4.49 -68.85 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 1.07 Total: 25.98 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 5.81 Total: 4.95 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -3.66 Total: -86.45 kcal Atomic # 8 Polarization: -55.82 SS G_CDS: -0.75 Total: -56.58 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -73.34 4.49 -68.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226858015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.391 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds