Wall clock time and date at job start Tue Mar 31 2020 11:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45200 * 109.47130 * 2 1 4 4 C 1.34229 * 116.99776 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00378 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99898 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47203 * 179.97438 * 6 4 3 8 8 H 1.09009 * 109.47026 * 54.52094 * 7 6 4 9 9 C 1.50696 * 109.47109 * 174.52188 * 7 6 4 10 10 H 1.08006 * 119.99994 * 95.17980 * 9 7 6 11 11 C 1.37876 * 120.00101 * 275.17649 * 9 7 6 12 12 N 1.31513 * 120.00023 * 355.11259 * 11 9 7 13 13 Si 1.86806 * 120.00119 * 175.11514 * 11 9 7 14 14 H 1.48503 * 109.46920 * 359.97438 * 13 11 9 15 15 H 1.48493 * 109.47068 * 119.99885 * 13 11 9 16 16 H 1.48497 * 109.47228 * 239.99974 * 13 11 9 17 17 O 1.42898 * 109.47374 * 294.52501 * 7 6 4 18 18 C 1.35837 * 117.00129 * 155.37380 * 17 7 6 19 19 C 1.39930 * 119.57727 * 5.29857 * 18 17 7 20 20 C 1.35937 * 120.90527 * 179.70693 * 19 18 17 21 21 C 1.40667 * 119.78182 * 0.56267 * 20 19 18 22 22 N 1.33703 * 121.03672 * 179.67479 * 21 20 19 23 23 C 1.31363 * 119.73434 * 180.02562 * 22 21 20 24 24 C 1.39607 * 120.72562 * 0.04631 * 23 22 21 25 25 N 1.31376 * 120.71005 * 359.97438 * 24 23 22 26 26 C 1.33800 * 119.69888 * 359.97438 * 25 24 23 27 27 C 1.36573 * 119.57704 * 185.57181 * 18 17 7 28 28 H 1.08990 * 109.47064 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46409 * 300.00135 * 1 2 3 30 30 H 1.08996 * 109.46822 * 59.99914 * 1 2 3 31 31 H 1.09000 * 109.47107 * 240.00109 * 2 1 3 32 32 H 1.08996 * 109.46822 * 120.00086 * 2 1 3 33 33 H 1.09005 * 109.46861 * 59.99787 * 6 4 3 34 34 H 1.08998 * 109.46933 * 300.00118 * 6 4 3 35 35 H 0.97002 * 119.99952 * 5.12124 * 12 11 9 36 36 H 1.08000 * 119.55126 * 359.97438 * 19 18 17 37 37 H 1.08005 * 120.10824 * 180.27688 * 20 19 18 38 38 H 1.07996 * 119.63674 * 180.02562 * 23 22 21 39 39 H 1.07995 * 119.64803 * 179.97438 * 24 23 22 40 40 H 1.07995 * 120.15683 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7804 2.2422 -0.8377 9 6 6.0244 4.2433 -0.1373 10 1 6.3133 4.7970 0.7438 11 6 6.1823 4.8044 -1.3867 12 7 5.9214 4.0959 -2.4636 13 14 6.7670 6.5711 -1.5501 14 1 6.9891 7.1459 -0.1990 15 1 8.0380 6.6029 -2.3173 16 1 5.7379 7.3691 -2.2639 17 8 5.8951 2.2745 1.2249 18 6 7.1076 1.6622 1.2112 19 6 7.8997 1.7243 0.0594 20 6 9.1199 1.1265 0.0180 21 6 9.5924 0.4246 1.1418 22 7 10.7858 -0.1782 1.1263 23 6 11.2017 -0.8272 2.1900 24 6 10.4106 -0.8960 3.3383 25 7 9.2342 -0.3125 3.3785 26 6 8.7887 0.3555 2.3082 27 6 7.5355 0.9892 2.3199 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.5851 3.4698 0.8888 34 1 3.5845 3.4692 -0.8912 35 1 5.5475 3.2048 -2.3790 36 1 7.5386 2.2581 -0.8072 37 1 9.7225 1.1863 -0.8763 38 1 12.1660 -1.3132 2.1760 39 1 10.7695 -1.4346 4.2028 40 1 6.9130 0.9443 3.2012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228603943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:44 Heat of formation + Delta-G solvation = -84.651062 kcal Electronic energy + Delta-G solvation = -25961.947718 eV Core-core repulsion = 22127.409725 eV Total energy + Delta-G solvation = -3834.537993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.39928 -41.64645 -40.45483 -37.90466 -37.22615 -35.84216 -35.49485 -33.06153 -32.20778 -31.72560 -30.64717 -27.83718 -26.11797 -25.47768 -24.55574 -23.65671 -23.22738 -21.83249 -20.32657 -19.37439 -19.21765 -18.52947 -18.08289 -17.77788 -17.48086 -17.12532 -16.38537 -15.99362 -15.74842 -15.62706 -15.52016 -15.39575 -14.91918 -14.56204 -14.39258 -13.87008 -13.80881 -13.51242 -13.37544 -13.27671 -13.05530 -12.85656 -12.77242 -12.66348 -12.61357 -12.54638 -12.12476 -11.96430 -11.73995 -11.61747 -11.57726 -10.81765 -10.62116 -10.09306 -9.88360 -9.14466 -8.73996 -6.58535 -0.76177 -0.38059 0.90380 1.12658 1.54971 1.57605 1.68594 1.80170 1.84276 2.26449 2.49844 3.01392 3.03396 3.13652 3.24726 3.35713 3.70024 3.75204 3.93310 3.96679 4.01514 4.04504 4.16453 4.22296 4.25302 4.28506 4.45820 4.53900 4.70683 4.77657 4.82313 4.87354 4.90586 4.95981 5.08612 5.13291 5.28992 5.38509 5.54769 5.61902 5.95273 6.29265 6.36591 6.49923 6.69620 6.76713 7.22453 8.57789 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.005004 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.274256 B = 5594.665054 C = 8126.901091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.048 3.952 3 O -0.362 6.362 4 C 0.463 3.537 5 O -0.536 6.536 6 C -0.097 4.097 7 C 0.209 3.791 8 H 0.026 0.974 9 C -0.625 4.625 10 H 0.055 0.945 11 C -0.002 4.002 12 N -0.913 5.913 13 Si 1.115 2.885 14 H -0.276 1.276 15 H -0.281 1.281 16 H -0.271 1.271 17 O -0.321 6.321 18 C 0.177 3.823 19 C -0.161 4.161 20 C -0.053 4.053 21 C 0.025 3.975 22 N -0.438 5.438 23 C 0.064 3.936 24 C 0.096 3.904 25 N -0.462 5.462 26 C 0.104 3.896 27 C -0.173 4.173 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.261 0.739 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.223 0.777 39 H 0.224 0.776 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.555 -8.456 7.114 11.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.279 6.279 4 C 0.307 3.693 5 O -0.426 6.426 6 C -0.135 4.135 7 C 0.154 3.846 8 H 0.043 0.957 9 C -0.662 4.662 10 H 0.073 0.927 11 C -0.204 4.204 12 N -0.549 5.549 13 Si 0.936 3.064 14 H -0.201 1.201 15 H -0.207 1.207 16 H -0.196 1.196 17 O -0.233 6.233 18 C 0.127 3.873 19 C -0.182 4.182 20 C -0.072 4.072 21 C -0.098 4.098 22 N -0.152 5.152 23 C -0.112 4.112 24 C -0.081 4.081 25 N -0.178 5.178 26 C -0.018 4.018 27 C -0.194 4.194 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.071 0.929 36 H 0.150 0.850 37 H 0.170 0.830 38 H 0.239 0.761 39 H 0.240 0.760 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.780 -7.441 6.026 9.607 hybrid contribution -0.589 -1.235 0.668 1.522 sum 0.191 -8.676 6.694 10.960 Atomic orbital electron populations 1.21813 0.89664 1.04539 1.03834 1.23323 0.97621 0.79451 1.02151 1.86536 1.23789 1.33757 1.83850 1.24360 0.80648 0.93225 0.71026 1.90615 1.61165 1.44108 1.46675 1.21839 0.95361 0.89782 1.06482 1.20059 0.89825 0.93326 0.81396 0.95661 1.22401 1.47176 1.00637 0.96021 0.92702 1.27099 0.93861 1.08295 0.91109 1.70921 1.40696 1.12042 1.31205 0.82935 0.76943 0.70240 0.76245 1.20109 1.20656 1.19637 1.85884 1.31213 1.67552 1.38668 1.18786 0.85362 0.89653 0.93460 1.21419 0.95808 1.01904 0.99028 1.20753 0.94585 0.94221 0.97680 1.19451 0.93361 1.01885 0.95132 1.68598 1.11581 1.05767 1.29294 1.24819 1.02512 0.95316 0.88583 1.24941 0.88779 0.93832 1.00500 1.68700 1.15738 1.07295 1.26031 1.19039 0.94663 0.96979 0.91140 1.19711 0.96868 1.03944 0.98868 0.87808 0.91045 0.91203 0.91882 0.91726 0.86337 0.86599 0.92871 0.85016 0.82997 0.76094 0.75956 0.84350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 10.29 71.98 0.74 -1.86 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.36 -12.54 10.22 -51.41 -0.53 -13.06 16 4 C 0.46 19.07 7.84 71.24 0.56 19.63 16 5 O -0.54 -25.02 15.18 26.92 0.41 -24.61 16 6 C -0.10 -4.11 5.50 29.85 0.16 -3.94 16 7 C 0.21 10.20 0.90 29.85 0.03 10.23 16 8 H 0.03 1.37 4.61 -2.38 -0.01 1.36 16 9 C -0.63 -32.19 7.69 25.60 0.20 -31.99 16 10 H 0.05 2.93 7.82 -2.91 -0.02 2.90 16 11 C 0.00 -0.10 5.45 84.65 0.46 0.37 16 12 N -0.91 -49.56 13.63 21.45 0.29 -49.27 16 13 Si 1.11 46.18 29.91 68.60 2.05 48.24 16 14 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 15 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 16 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 17 O -0.32 -15.64 9.03 -78.39 -0.71 -16.35 16 18 C 0.18 8.17 6.54 22.29 0.15 8.32 16 19 C -0.16 -7.29 8.60 22.15 0.19 -7.10 16 20 C -0.05 -2.10 9.98 22.33 0.22 -1.88 16 21 C 0.02 0.92 6.59 40.34 0.27 1.19 16 22 N -0.44 -13.67 10.46 -188.05 -1.97 -15.64 16 23 C 0.06 1.35 11.21 85.09 0.95 2.30 16 24 C 0.10 2.03 11.21 85.09 0.95 2.98 16 25 N -0.46 -14.81 10.47 -188.16 -1.97 -16.78 16 26 C 0.10 3.97 6.59 40.27 0.27 4.24 16 27 C -0.17 -7.30 9.89 22.41 0.22 -7.08 16 28 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 32 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.12 4.61 8.14 -2.38 -0.02 4.59 16 34 H 0.12 4.90 8.14 -2.39 -0.02 4.88 16 35 H 0.26 14.37 6.66 -92.71 -0.62 13.76 16 36 H 0.13 6.57 5.59 -2.91 -0.02 6.55 16 37 H 0.15 5.35 8.06 -2.91 -0.02 5.33 16 38 H 0.22 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.22 2.13 8.06 -2.91 -0.02 2.10 16 40 H 0.14 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -69.53 348.56 4.62 -64.91 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 1.22 Total: 25.42 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: 5.81 Total: -2.86 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.64 Total: -81.69 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.82 Total: -54.02 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.24 kcal Total: -69.53 4.62 -64.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228603943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.740 kcal (2) G-P(sol) polarization free energy of solvation -69.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds