Wall clock time and date at job start Tue Mar 31 2020 11:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21311 * 120.00312 * 2 1 4 4 C 1.46736 * 119.99989 * 179.97438 * 2 1 3 5 5 C 1.40400 * 119.96358 * 0.02562 * 4 2 1 6 6 C 1.36167 * 120.36260 * 180.02562 * 5 4 2 7 7 C 1.39965 * 120.07577 * 359.97438 * 6 5 4 8 8 N 1.35713 * 133.47390 * 180.30840 * 7 6 5 9 9 C 1.30840 * 108.81286 * 180.14157 * 8 7 6 10 10 O 1.35070 * 124.91737 * 179.83836 * 9 8 7 11 11 C 1.42903 * 116.99995 * 359.68967 * 10 9 8 12 12 H 1.08995 * 110.88705 * 333.88229 * 11 10 9 13 13 C 1.55152 * 111.00250 * 210.00217 * 11 10 9 14 14 C 1.54321 * 102.94317 * 206.38787 * 13 11 10 15 15 N 1.47027 * 107.27021 * 22.19130 * 14 13 11 16 16 C 1.36933 * 125.64675 * 181.02297 * 15 14 13 17 17 H 1.08003 * 119.99618 * 185.85082 * 16 15 14 18 18 C 1.38814 * 120.00334 * 5.84875 * 16 15 14 19 19 N 1.31620 * 119.99635 * 6.98272 * 18 16 15 20 20 Si 1.86798 * 119.99941 * 187.25953 * 18 16 15 21 21 H 1.48498 * 109.47236 * 264.73801 * 20 18 16 22 22 H 1.48497 * 109.47338 * 24.73891 * 20 18 16 23 23 H 1.48502 * 109.46995 * 144.74053 * 20 18 16 24 24 C 1.47425 * 108.70131 * 1.29142 * 15 14 13 25 25 O 1.34313 * 110.16031 * 359.56838 * 9 8 7 26 26 C 1.35325 * 108.11488 * 0.26761 * 25 9 8 27 27 C 1.37976 * 133.74063 * 179.97438 * 26 25 9 28 28 H 1.08998 * 109.47169 * 240.00236 * 1 2 3 29 29 H 1.09003 * 109.46962 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47034 * 119.99610 * 1 2 3 31 31 H 1.07999 * 119.81923 * 359.97438 * 5 4 2 32 32 H 1.08004 * 119.96663 * 179.97438 * 6 5 4 33 33 H 1.08998 * 110.72028 * 88.02302 * 13 11 10 34 34 H 1.09003 * 110.72265 * 324.75123 * 13 11 10 35 35 H 1.09000 * 109.88300 * 262.77572 * 14 13 11 36 36 H 1.08998 * 109.88839 * 141.61283 * 14 13 11 37 37 H 0.96998 * 119.99688 * 180.27163 * 19 18 16 38 38 H 1.09002 * 110.36657 * 94.47800 * 24 15 14 39 39 H 1.08997 * 110.36285 * 216.80062 * 24 15 14 40 40 H 1.07995 * 120.19440 * 0.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2407 -1.2708 0.0006 5 6 1.5379 -2.4862 0.0006 6 6 2.2105 -3.6702 0.0016 7 6 3.6101 -3.6818 0.0022 8 7 4.5357 -4.6743 -0.0021 9 6 5.7292 -4.1383 0.0040 10 8 6.8882 -4.8319 0.0053 11 6 6.7911 -6.2576 0.0064 12 1 5.8522 -6.5828 0.4544 13 6 8.0043 -6.8971 0.7319 14 6 8.1059 -8.2894 0.0741 15 7 7.4364 -8.2049 -1.2321 16 6 7.2900 -9.2353 -2.1220 17 1 6.8650 -9.0501 -3.0974 18 6 7.6878 -10.5179 -1.7703 19 7 8.0767 -10.7718 -0.5388 20 14 7.6785 -11.8816 -3.0469 21 1 6.4047 -12.6391 -2.9528 22 1 7.8039 -11.2907 -4.4034 23 1 8.8195 -12.7992 -2.7992 24 6 6.9545 -6.8254 -1.4280 25 8 5.6349 -2.7985 0.0029 26 6 4.3224 -2.4690 0.0017 27 6 3.6398 -1.2699 0.0007 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 0.4579 -2.4821 0.0006 32 1 1.6634 -4.6014 0.0020 33 1 7.8102 -6.9886 1.8006 34 1 8.9103 -6.3184 0.5517 35 1 7.6082 -9.0315 0.6984 36 1 9.1530 -8.5593 -0.0627 37 1 8.3584 -11.6672 -0.2941 38 1 7.6869 -6.2436 -1.9877 39 1 5.9954 -6.8287 -1.9458 40 1 4.1823 -0.3361 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228665678.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:22 Heat of formation + Delta-G solvation = 7.630935 kcal Electronic energy + Delta-G solvation = -25130.625409 eV Core-core repulsion = 21300.089064 eV Total energy + Delta-G solvation = -3830.536345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.46147 -40.05727 -39.36557 -37.72197 -36.53745 -34.72520 -32.43825 -31.60174 -31.01189 -29.53125 -28.84732 -27.57358 -24.89973 -24.08548 -23.63315 -22.21629 -20.81669 -20.56446 -20.28123 -18.77938 -17.94803 -17.47740 -17.30824 -16.96173 -16.12304 -15.35508 -15.34414 -14.84447 -14.73687 -14.62226 -14.27777 -14.08447 -13.97199 -13.37230 -12.99130 -12.81520 -12.78557 -12.56565 -12.50325 -12.21500 -11.97510 -11.70656 -11.38623 -11.03949 -10.88438 -10.62573 -10.50111 -10.31793 -10.20993 -10.12954 -10.01652 -9.80766 -9.21319 -8.73075 -8.42209 -6.97868 -5.80861 -3.18510 0.01919 0.86890 1.26421 1.71572 2.43430 3.22644 3.35570 3.38181 3.41245 3.43412 3.75032 3.99390 4.25672 4.44031 4.48557 4.69083 4.76338 4.95994 4.98987 4.99050 5.07944 5.13882 5.23748 5.42751 5.44054 5.48984 5.57101 5.65209 5.75034 5.81801 5.94515 6.03900 6.16394 6.19237 6.27737 6.42524 6.48673 6.99019 7.13690 7.30619 7.45285 7.50015 7.68854 8.12537 9.08342 9.68420 10.31284 11.28832 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.027890 B = 0.002455 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.700101 B =11400.767333 C =12007.260619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.401 3.599 3 O -0.460 6.460 4 C -0.175 4.175 5 C -0.065 4.065 6 C -0.087 4.087 7 C 0.098 3.902 8 N -0.524 5.524 9 C 0.467 3.533 10 O -0.256 6.256 11 C 0.076 3.924 12 H 0.108 0.892 13 C -0.137 4.137 14 C 0.173 3.827 15 N -0.598 5.598 16 C -0.232 4.232 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.916 3.084 21 H -0.288 1.288 22 H -0.280 1.280 23 H -0.289 1.289 24 C 0.124 3.876 25 O -0.199 6.199 26 C -0.026 4.026 27 C -0.010 4.010 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.144 0.856 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.254 0.746 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.595 17.856 3.808 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.280 3.720 3 O -0.336 6.336 4 C -0.177 4.177 5 C -0.085 4.085 6 C -0.106 4.106 7 C -0.017 4.017 8 N -0.274 5.274 9 C 0.221 3.779 10 O -0.160 6.160 11 C 0.021 3.979 12 H 0.126 0.874 13 C -0.176 4.176 14 C 0.048 3.952 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.098 0.902 18 C -0.202 4.202 19 N -0.567 5.567 20 Si 0.746 3.254 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.215 1.215 24 C -0.003 4.003 25 O -0.094 6.094 26 C -0.076 4.076 27 C -0.028 4.028 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.163 0.837 32 H 0.162 0.838 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.069 0.931 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.950 17.583 3.797 22.164 hybrid contribution 0.357 -0.303 -0.608 0.767 sum -12.592 17.280 3.190 21.618 Atomic orbital electron populations 1.22237 0.93190 1.05323 1.04789 1.22263 0.91754 0.87023 0.70943 1.90574 1.72183 1.34244 1.36643 1.20128 0.92344 0.95535 1.09669 1.20955 1.00451 0.90361 0.96733 1.19975 0.89541 0.99469 1.01662 1.19936 0.95239 0.87770 0.98737 1.71255 0.96675 1.29957 1.29552 1.23029 0.87197 0.78635 0.89005 1.86026 1.20473 1.23728 1.85764 1.24529 1.02270 0.70275 1.00854 0.87401 1.23187 0.95886 0.98894 0.99585 1.21331 0.97780 0.89612 0.86432 1.44311 1.65328 1.04326 1.18599 1.19058 1.36688 0.86007 0.94183 0.90187 1.24846 1.01457 0.97198 0.96734 1.69914 1.49983 1.20455 1.16316 0.86047 0.77311 0.81663 0.80416 1.21474 1.20533 1.21525 1.21906 0.98233 0.88019 0.92135 1.84430 1.26497 1.22191 1.76258 1.19849 0.79951 0.97225 1.10547 1.19992 0.92420 0.94734 0.95692 0.88575 0.89595 0.88561 0.83728 0.83777 0.90740 0.90804 0.91036 0.94168 0.93527 0.95068 0.93082 0.83700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.84 8.91 36.01 0.32 -0.52 16 2 C 0.40 3.37 7.21 -30.88 -0.22 3.15 16 3 O -0.46 -5.51 17.06 5.53 0.09 -5.42 16 4 C -0.18 -1.59 5.87 -105.02 -0.62 -2.21 16 5 C -0.07 -0.49 9.39 -39.51 -0.37 -0.86 16 6 C -0.09 -0.88 10.03 -39.68 -0.40 -1.27 16 7 C 0.10 1.34 7.24 -84.59 -0.61 0.73 16 8 N -0.52 -8.53 10.12 -12.69 -0.13 -8.66 16 9 C 0.47 7.63 9.01 52.34 0.47 8.10 16 10 O -0.26 -4.34 9.99 -40.22 -0.40 -4.75 16 11 C 0.08 1.38 3.45 -24.47 -0.08 1.29 16 12 H 0.11 2.00 7.21 -51.93 -0.37 1.63 16 13 C -0.14 -2.48 6.68 -24.90 -0.17 -2.64 16 14 C 0.17 4.02 5.44 -3.06 -0.02 4.01 16 15 N -0.60 -15.01 3.39 -169.93 -0.58 -15.59 16 16 C -0.23 -6.34 10.26 -15.06 -0.15 -6.49 16 17 H 0.08 2.12 7.84 -52.48 -0.41 1.71 16 18 C -0.01 -0.16 5.45 -17.43 -0.10 -0.25 16 19 N -0.92 -26.22 10.45 55.49 0.58 -25.64 16 20 Si 0.92 21.66 29.56 -169.99 -5.02 16.63 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C 0.12 2.60 6.98 -2.41 -0.02 2.59 16 25 O -0.20 -3.04 10.79 -20.53 -0.22 -3.27 16 26 C -0.03 -0.36 7.40 -38.77 -0.29 -0.64 16 27 C -0.01 -0.11 9.60 -39.05 -0.37 -0.48 16 28 H 0.10 0.23 8.07 -51.93 -0.42 -0.19 16 29 H 0.09 0.37 8.12 -51.93 -0.42 -0.05 16 30 H 0.10 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.15 0.51 7.00 -52.49 -0.37 0.15 16 32 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.07 1.83 6.89 -51.93 -0.36 1.47 16 36 H 0.04 1.01 7.97 -51.93 -0.41 0.60 16 37 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.15 1.53 7.63 -52.49 -0.40 1.13 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -31.77 343.34 -7.96 -39.74 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -4.83 Total: -2.72 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -2.62 Total: 4.49 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.13 Total: -49.89 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.53 Total: -13.43 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.77 -7.96 -39.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228665678.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.368 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds