Wall clock time and date at job start Tue Mar 31 2020 11:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45204 * 109.47381 * 2 1 4 4 C 1.34231 * 116.99894 * 180.02562 * 3 2 1 5 5 O 1.20825 * 119.99850 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99747 * 179.97438 * 4 3 2 7 7 C 1.53005 * 109.47204 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47101 * 54.99849 * 7 6 4 9 9 C 1.50699 * 109.47272 * 175.00491 * 7 6 4 10 10 H 1.08004 * 119.99600 * 239.99595 * 9 7 6 11 11 C 1.37873 * 120.00460 * 59.99812 * 9 7 6 12 12 N 1.31521 * 119.99518 * 359.97438 * 11 9 7 13 13 Si 1.86790 * 120.00308 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47206 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47238 * 119.99904 * 13 11 9 16 16 H 1.48503 * 109.47213 * 239.99897 * 13 11 9 17 17 O 1.42905 * 109.46802 * 295.00352 * 7 6 4 18 18 C 1.35521 * 116.99808 * 150.00106 * 17 7 6 19 19 N 1.31664 * 120.08265 * 359.97438 * 18 17 7 20 20 C 1.32600 * 122.76544 * 180.02562 * 19 18 17 21 21 C 1.36154 * 121.83768 * 0.02584 * 20 19 18 22 22 C 1.40650 * 118.79095 * 359.97363 * 21 20 19 23 23 C 1.40518 * 122.28423 * 179.97438 * 22 21 20 24 24 C 1.36667 * 117.96842 * 180.02562 * 23 22 21 25 25 C 1.39376 * 119.91932 * 359.97438 * 24 23 22 26 26 N 1.31137 * 121.82455 * 0.03115 * 25 24 23 27 27 C 1.33335 * 121.20276 * 359.65779 * 26 25 24 28 28 H 1.09003 * 109.46562 * 300.00014 * 1 2 3 29 29 H 1.08999 * 109.46670 * 59.99544 * 1 2 3 30 30 H 1.08999 * 109.47272 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46924 * 240.00328 * 2 1 3 32 32 H 1.08999 * 109.47401 * 120.00315 * 2 1 3 33 33 H 1.09004 * 109.46950 * 60.00474 * 6 4 3 34 34 H 1.09000 * 109.47631 * 300.00178 * 6 4 3 35 35 H 0.97004 * 119.99535 * 180.02562 * 12 11 9 36 36 H 1.08001 * 119.08745 * 180.02562 * 20 19 18 37 37 H 1.08008 * 120.60799 * 180.02562 * 21 20 19 38 38 H 1.08009 * 121.01659 * 359.97438 * 23 22 21 39 39 H 1.08004 * 120.04202 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.08560 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0015 6 6 3.9208 2.9373 -0.0012 7 6 5.4488 2.8572 -0.0023 8 1 5.7801 2.2494 -0.8443 9 6 6.0244 4.2443 -0.1267 10 1 6.6587 4.4926 -0.9649 11 6 5.7416 5.1964 0.8296 12 7 4.9689 4.8941 1.8500 13 14 6.4546 6.9160 0.6750 14 1 7.2833 6.9996 -0.5544 15 1 5.3495 7.9047 0.5947 16 1 7.2973 7.2109 1.8617 17 8 5.8955 2.2637 1.2185 18 6 7.0511 1.5572 1.1723 19 7 7.7088 1.4412 0.0376 20 6 8.8432 0.7627 -0.0682 21 6 9.4070 0.1351 1.0004 22 6 8.7636 0.2129 2.2487 23 6 9.2801 -0.4070 3.3991 24 6 8.5820 -0.2748 4.5666 25 6 7.3968 0.4583 4.5887 26 7 6.9199 1.0345 3.5115 27 6 7.5562 0.9486 2.3429 28 1 -0.3632 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5853 3.4696 0.8889 34 1 3.5846 3.4692 -0.8911 35 1 4.7696 5.5641 2.5226 36 1 9.3335 0.7063 -1.0288 37 1 10.3320 -0.4119 0.8917 38 1 10.2002 -0.9714 3.3618 39 1 8.9486 -0.7372 5.4712 40 1 6.8562 0.5544 5.5187 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228808612.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:25 Heat of formation + Delta-G solvation = -79.573911 kcal Electronic energy + Delta-G solvation = -26516.854178 eV Core-core repulsion = 22682.536347 eV Total energy + Delta-G solvation = -3834.317831 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.06155 -41.43717 -39.67779 -38.26725 -37.47242 -35.30369 -34.03228 -32.91758 -32.36582 -31.95666 -30.41734 -28.17491 -25.79689 -25.14384 -24.61577 -23.50954 -22.91778 -21.65273 -19.93708 -18.89168 -18.84041 -18.43192 -17.85457 -17.64760 -17.29283 -16.93905 -16.48906 -16.18416 -15.80699 -15.28973 -15.07176 -14.90894 -14.59068 -14.42905 -13.97766 -13.94951 -13.74712 -13.66470 -13.35449 -13.04041 -12.97189 -12.86778 -12.83082 -12.61012 -12.49870 -12.33040 -11.63256 -11.55672 -11.49023 -11.40549 -10.81294 -10.72916 -10.55581 -10.22810 -10.18361 -8.72749 -8.17261 -6.43316 -0.41129 -0.16850 1.09130 1.27620 1.37219 1.40133 1.51956 1.79880 2.21710 2.37001 2.44748 3.12399 3.24202 3.36289 3.71169 3.76794 3.92158 3.94802 3.96585 4.04849 4.08710 4.11703 4.30696 4.45255 4.49233 4.62375 4.71343 4.75978 4.83620 4.87080 4.90231 5.00226 5.09339 5.11302 5.25767 5.36487 5.49813 5.53143 5.69708 5.81661 6.01667 6.51816 6.81878 6.87333 7.02140 7.24825 7.36818 8.83050 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008374 B = 0.006162 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3343.078046 B = 4542.909151 C = 6514.436916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.542 6.542 6 C -0.099 4.099 7 C 0.226 3.774 8 H 0.035 0.965 9 C -0.561 4.561 10 H 0.058 0.942 11 C 0.040 3.960 12 N -0.880 5.880 13 Si 0.957 3.043 14 H -0.268 1.268 15 H -0.265 1.265 16 H -0.287 1.287 17 O -0.277 6.277 18 C 0.378 3.622 19 N -0.573 5.573 20 C 0.110 3.890 21 C -0.212 4.212 22 C -0.059 4.059 23 C -0.074 4.074 24 C -0.136 4.136 25 C 0.089 3.911 26 N -0.480 5.480 27 C 0.017 3.983 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.267 0.733 36 H 0.181 0.819 37 H 0.182 0.818 38 H 0.188 0.812 39 H 0.189 0.811 40 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -11.522 2.842 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.282 6.282 4 C 0.310 3.690 5 O -0.432 6.432 6 C -0.136 4.136 7 C 0.172 3.828 8 H 0.053 0.947 9 C -0.598 4.598 10 H 0.077 0.923 11 C -0.164 4.164 12 N -0.515 5.515 13 Si 0.782 3.218 14 H -0.193 1.193 15 H -0.190 1.190 16 H -0.213 1.213 17 O -0.178 6.178 18 C 0.186 3.814 19 N -0.304 5.304 20 C -0.033 4.033 21 C -0.233 4.233 22 C -0.066 4.066 23 C -0.100 4.100 24 C -0.157 4.157 25 C -0.084 4.084 26 N -0.189 5.189 27 C -0.108 4.108 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.198 0.802 37 H 0.199 0.801 38 H 0.205 0.795 39 H 0.206 0.794 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 1.508 -10.802 2.336 11.154 hybrid contribution 1.187 0.209 0.385 1.265 sum 2.695 -10.593 2.721 11.264 Atomic orbital electron populations 1.21805 0.89604 1.04510 1.03784 1.23280 0.97656 0.79714 1.01853 1.86546 1.24108 1.33524 1.84040 1.24567 0.80388 0.93488 0.70602 1.90575 1.61148 1.44276 1.47175 1.21721 0.95887 0.88994 1.07003 1.19705 0.89042 0.92078 0.81996 0.94736 1.21493 1.32681 0.95371 1.10289 0.92347 1.25771 0.94237 1.02327 0.94087 1.70011 1.35161 1.35207 1.11168 0.85538 0.78699 0.79713 0.77875 1.19279 1.18966 1.21325 1.86452 1.32673 1.59583 1.39099 1.20455 0.86765 0.85981 0.88165 1.67248 1.12605 1.24221 1.26343 1.22520 0.89408 0.90700 1.00697 1.21895 1.03925 1.06315 0.91117 1.19157 0.93310 0.96319 0.97797 1.21826 1.00894 0.97200 0.90062 1.22467 0.94607 0.97920 1.00676 1.23649 0.95231 0.93139 0.96421 1.67868 1.33286 1.18535 0.99217 1.19158 0.96159 1.03226 0.92237 0.91486 0.90877 0.87699 0.91534 0.92607 0.86088 0.86261 0.92325 0.80195 0.80091 0.79455 0.79382 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.29 71.98 0.74 -2.23 16 2 C 0.05 1.51 6.19 71.98 0.45 1.95 16 3 O -0.36 -14.48 10.22 -51.43 -0.53 -15.01 16 4 C 0.46 21.87 7.84 71.23 0.56 22.43 16 5 O -0.54 -28.18 15.17 27.04 0.41 -27.77 16 6 C -0.10 -4.90 5.22 29.85 0.16 -4.75 16 7 C 0.23 12.53 1.60 29.85 0.05 12.57 16 8 H 0.03 1.97 6.81 -2.39 -0.02 1.96 16 9 C -0.56 -31.94 8.90 25.60 0.23 -31.72 16 10 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 11 C 0.04 2.23 5.24 84.65 0.44 2.68 16 12 N -0.88 -50.27 10.93 21.45 0.23 -50.03 16 13 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 16 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 17 O -0.28 -16.11 8.22 -74.44 -0.61 -16.72 16 18 C 0.38 20.10 7.54 85.46 0.64 20.74 16 19 N -0.57 -27.91 8.61 -308.93 -2.66 -30.57 16 20 C 0.11 4.04 11.07 84.09 0.93 4.97 16 21 C -0.21 -6.44 9.87 22.37 0.22 -6.22 16 22 C -0.06 -2.06 5.75 -21.28 -0.12 -2.18 16 23 C -0.07 -1.76 9.94 22.46 0.22 -1.54 16 24 C -0.14 -3.01 10.03 22.18 0.22 -2.79 16 25 C 0.09 2.78 11.14 85.07 0.95 3.72 16 26 N -0.48 -21.66 10.17 -188.23 -1.92 -23.57 16 27 C 0.02 0.78 6.64 40.52 0.27 1.05 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 2.01 8.13 -2.39 -0.02 1.99 16 32 H 0.06 1.81 8.13 -2.39 -0.02 1.80 16 33 H 0.12 6.52 6.22 -2.39 -0.01 6.50 16 34 H 0.12 5.34 8.14 -2.39 -0.02 5.32 16 35 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.18 5.05 8.06 -2.91 -0.02 5.03 16 37 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 38 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 39 H 0.19 2.10 8.06 -2.91 -0.02 2.07 16 40 H 0.18 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -81.40 349.72 3.98 -77.43 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 1.06 Total: 21.80 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 5.96 Total: 18.69 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.34 Total: -104.17 kcal Atomic # 8 Polarization: -58.77 SS G_CDS: -0.73 Total: -59.50 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.40 3.98 -77.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228808612.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -81.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds