Wall clock time and date at job start Tue Mar 31 2020 11:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07994 * 120.00113 * 94.63847 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00422 * 6.43684 * 11 9 7 13 13 Si 1.86802 * 119.99663 * 186.43573 * 11 9 7 14 14 H 1.48500 * 109.47115 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47254 * 300.00141 * 13 11 9 16 16 H 1.48496 * 109.46969 * 60.00252 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35772 * 117.00194 * 149.99607 * 17 7 6 19 19 C 1.38235 * 119.77906 * 179.72379 * 18 17 7 20 20 C 1.40588 * 117.39557 * 179.78970 * 19 18 17 21 21 C 1.40290 * 122.10852 * 180.20107 * 20 19 18 22 22 C 1.36174 * 119.48017 * 180.31382 * 21 20 19 23 23 C 1.39421 * 120.91249 * 359.97438 * 22 21 20 24 24 C 1.36080 * 121.17683 * 359.97438 * 23 22 21 25 25 C 1.40561 * 119.64434 * 0.02562 * 24 23 22 26 26 N 1.33475 * 121.72529 * 179.97438 * 25 24 23 27 27 N 1.28446 * 121.59414 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 30 30 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97002 * 119.99555 * 355.08174 * 12 11 9 36 36 H 1.08004 * 121.30333 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.26412 * 0.33159 * 21 20 19 38 38 H 1.07998 * 119.54478 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.41920 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.18013 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3053 4.8003 0.7455 11 6 6.1922 4.8005 -1.3861 12 7 5.7351 4.1778 -2.4504 13 14 7.0691 6.4399 -1.5678 14 1 7.1194 6.8180 -3.0030 15 1 6.3338 7.4815 -0.8065 16 1 8.4515 6.3232 -1.0384 17 8 5.8952 2.2742 1.2256 18 6 7.0529 1.5660 1.1856 19 6 7.5408 0.9821 2.3396 20 6 8.7410 0.2566 2.2400 21 6 9.3220 -0.3791 3.3474 22 6 10.4895 -1.0625 3.1914 23 6 11.1139 -1.1390 1.9472 24 6 10.5779 -0.5354 0.8517 25 6 9.3737 0.1798 0.9713 26 7 8.8117 0.7880 -0.0754 27 7 7.7115 1.4413 0.0369 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3438 3.2944 -2.3647 36 1 7.0185 1.0763 3.2803 37 1 8.8471 -0.3273 4.3160 38 1 10.9376 -1.5527 4.0431 39 1 12.0391 -1.6878 1.8508 40 1 11.0754 -0.6046 -0.1043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230239569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:41 Heat of formation + Delta-G solvation = -52.657947 kcal Electronic energy + Delta-G solvation = -25978.034279 eV Core-core repulsion = 22144.883612 eV Total energy + Delta-G solvation = -3833.150667 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95145 -39.99573 -38.41103 -36.96321 -36.06664 -33.86946 -32.89482 -31.72756 -31.09275 -30.48320 -29.20153 -25.95943 -25.00223 -23.73735 -23.24346 -22.35475 -21.72476 -20.18427 -18.69041 -18.33656 -17.43019 -16.72037 -16.54835 -16.28578 -15.80664 -15.59359 -15.09677 -14.55107 -14.19130 -14.09639 -13.82945 -13.77346 -13.33857 -13.29451 -12.88069 -12.68798 -12.26490 -12.07842 -12.01797 -11.89761 -11.75935 -11.43795 -11.31824 -11.21878 -10.88469 -10.68606 -10.31582 -10.26165 -10.12714 -10.03240 -9.91163 -9.05776 -8.98148 -8.65815 -8.50198 -7.69669 -6.57159 -4.36004 0.28437 1.08100 2.04577 2.78887 3.10436 3.13053 3.37003 3.43317 3.59366 3.74878 4.27007 4.40247 4.48440 4.61303 4.79491 4.92276 4.98631 5.02846 5.07012 5.15818 5.16627 5.25956 5.30405 5.34865 5.69100 5.75640 5.78433 5.80306 5.95362 5.97331 6.02554 6.08705 6.12458 6.34570 6.37893 6.38628 6.62812 6.83650 6.86936 7.02209 7.71727 7.86808 8.30148 8.36260 8.59835 9.13283 9.39312 10.79486 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.005114 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.492589 B = 5473.993773 C = 7981.730315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.058 3.942 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.510 6.510 6 C -0.104 4.104 7 C 0.208 3.792 8 H 0.068 0.932 9 C -0.617 4.617 10 H 0.061 0.939 11 C 0.036 3.964 12 N -0.889 5.889 13 Si 1.072 2.928 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.286 1.286 17 O -0.298 6.298 18 C 0.293 3.707 19 C -0.155 4.155 20 C -0.030 4.030 21 C -0.114 4.114 22 C -0.094 4.094 23 C -0.129 4.129 24 C -0.056 4.056 25 C 0.015 3.985 26 N -0.168 5.168 27 N -0.239 5.239 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.271 0.729 36 H 0.150 0.850 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.710 -9.571 9.582 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.300 3.700 5 O -0.397 6.397 6 C -0.142 4.142 7 C 0.154 3.846 8 H 0.086 0.914 9 C -0.654 4.654 10 H 0.079 0.921 11 C -0.171 4.171 12 N -0.523 5.523 13 Si 0.899 3.101 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.212 1.212 17 O -0.203 6.203 18 C 0.119 3.881 19 C -0.187 4.187 20 C -0.038 4.038 21 C -0.133 4.133 22 C -0.114 4.114 23 C -0.150 4.150 24 C -0.077 4.077 25 C -0.116 4.116 26 N -0.025 5.025 27 N -0.104 5.104 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.168 0.832 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.147 0.853 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.073 -8.261 7.136 10.969 hybrid contribution -0.591 -1.642 2.516 3.061 sum 0.482 -9.903 9.651 13.836 Atomic orbital electron populations 1.21781 0.93077 1.02477 1.03388 1.22900 0.95009 0.81485 1.02169 1.86570 1.25811 1.31347 1.84593 1.24738 0.79724 0.94059 0.71502 1.90617 1.60265 1.43445 1.45341 1.22159 0.97415 0.88750 1.05849 1.20165 0.87507 0.94889 0.82059 0.91447 1.22089 1.47162 1.00177 0.95940 0.92077 1.25886 0.94682 1.05006 0.91537 1.70823 1.35449 1.14404 1.31596 0.83501 0.76230 0.73968 0.76421 1.20400 1.21148 1.21206 1.86119 1.32773 1.61901 1.39487 1.21008 0.87908 0.88679 0.90554 1.21368 0.96958 1.01434 0.98955 1.18558 0.94180 0.96504 0.94572 1.20849 0.96503 0.98432 0.97539 1.20957 0.95022 0.97780 0.97590 1.20833 1.00692 1.00959 0.92530 1.20730 0.92741 0.94573 0.99671 1.20323 0.98264 1.01796 0.91228 1.73697 1.02088 1.01471 1.25245 1.73214 1.02522 1.12116 1.22580 0.91651 0.91526 0.90694 0.91633 0.91769 0.88093 0.86287 0.91733 0.83206 0.85042 0.85505 0.85306 0.84408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.59 10.22 -39.23 -0.40 -6.99 16 4 C 0.46 9.61 7.84 36.01 0.28 9.89 16 5 O -0.51 -11.99 15.18 -23.93 -0.36 -12.35 16 6 C -0.10 -2.28 5.38 -27.88 -0.15 -2.43 16 7 C 0.21 5.29 1.04 -27.88 -0.03 5.26 16 8 H 0.07 1.91 5.60 -51.93 -0.29 1.62 16 9 C -0.62 -16.75 8.64 -34.44 -0.30 -17.05 16 10 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 11 C 0.04 0.99 5.45 -17.82 -0.10 0.90 16 12 N -0.89 -25.59 13.63 55.43 0.76 -24.84 16 13 Si 1.07 24.61 29.91 -169.99 -5.08 19.52 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 17 O -0.30 -7.25 9.02 -32.95 -0.30 -7.55 16 18 C 0.29 6.79 7.51 -17.05 -0.13 6.66 16 19 C -0.16 -2.92 9.94 -38.70 -0.38 -3.30 16 20 C -0.03 -0.51 5.75 -106.80 -0.61 -1.13 16 21 C -0.11 -1.45 9.81 -39.55 -0.39 -1.83 16 22 C -0.09 -0.99 9.96 -39.88 -0.40 -1.39 16 23 C -0.13 -1.42 9.94 -39.92 -0.40 -1.82 16 24 C -0.06 -0.79 10.01 -39.48 -0.40 -1.19 16 25 C 0.01 0.27 6.69 -84.84 -0.57 -0.30 16 26 N -0.17 -3.74 11.54 32.23 0.37 -3.36 16 27 N -0.24 -5.92 9.78 30.42 0.30 -5.63 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 33 H 0.10 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.12 2.65 7.84 -51.93 -0.41 2.24 16 35 H 0.27 7.85 6.39 -40.82 -0.26 7.59 16 36 H 0.15 2.34 8.06 -52.48 -0.42 1.92 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -33.17 351.79 -7.18 -40.36 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -4.81 Total: 3.37 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -2.95 Total: -7.83 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 1.42 Total: -33.83 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -1.06 Total: -26.89 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.08 Total: 19.52 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.17 -7.18 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230239569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.301 kcal (2) G-P(sol) polarization free energy of solvation -33.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds