Wall clock time and date at job start Tue Mar 31 2020 11:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45203 * 109.47208 * 2 1 4 4 C 1.34221 * 116.99788 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00570 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99986 * 180.02562 * 4 3 2 7 7 C 1.52996 * 109.47461 * 179.97438 * 6 4 3 8 8 H 1.09006 * 109.47001 * 54.49014 * 7 6 4 9 9 C 1.50705 * 109.47438 * 174.48572 * 7 6 4 10 10 H 1.07994 * 120.00113 * 94.63847 * 9 7 6 11 11 C 1.37879 * 119.99781 * 274.64605 * 9 7 6 12 12 N 1.31511 * 120.00422 * 6.43684 * 11 9 7 13 13 Si 1.86802 * 119.99663 * 186.43573 * 11 9 7 14 14 H 1.48500 * 109.47115 * 179.97438 * 13 11 9 15 15 H 1.48495 * 109.47254 * 300.00141 * 13 11 9 16 16 H 1.48496 * 109.46969 * 60.00252 * 13 11 9 17 17 O 1.42895 * 109.47404 * 294.48768 * 7 6 4 18 18 C 1.35772 * 117.00194 * 149.99607 * 17 7 6 19 19 C 1.38235 * 119.77906 * 179.72379 * 18 17 7 20 20 C 1.40588 * 117.39557 * 179.78970 * 19 18 17 21 21 C 1.40290 * 122.10852 * 180.20107 * 20 19 18 22 22 C 1.36174 * 119.48017 * 180.31382 * 21 20 19 23 23 C 1.39421 * 120.91249 * 359.97438 * 22 21 20 24 24 C 1.36080 * 121.17683 * 359.97438 * 23 22 21 25 25 C 1.40561 * 119.64434 * 0.02562 * 24 23 22 26 26 N 1.33475 * 121.72529 * 179.97438 * 25 24 23 27 27 N 1.28446 * 121.59414 * 180.02562 * 26 25 24 28 28 H 1.08999 * 109.46872 * 299.99702 * 1 2 3 29 29 H 1.08994 * 109.47314 * 59.99343 * 1 2 3 30 30 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46872 * 240.00298 * 2 1 3 32 32 H 1.09000 * 109.46938 * 120.00522 * 2 1 3 33 33 H 1.09001 * 109.47159 * 59.99909 * 6 4 3 34 34 H 1.08995 * 109.47433 * 300.00373 * 6 4 3 35 35 H 0.97002 * 119.99555 * 355.08174 * 12 11 9 36 36 H 1.08004 * 121.30333 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.26412 * 0.33159 * 21 20 19 38 38 H 1.07998 * 119.54478 * 180.02562 * 22 21 20 39 39 H 1.07998 * 119.41920 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.18013 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7801 2.2425 -0.8370 9 6 6.0243 4.2434 -0.1361 10 1 6.3053 4.8003 0.7455 11 6 6.1922 4.8005 -1.3861 12 7 5.7351 4.1778 -2.4504 13 14 7.0691 6.4399 -1.5678 14 1 7.1194 6.8180 -3.0030 15 1 6.3338 7.4815 -0.8065 16 1 8.4515 6.3232 -1.0384 17 8 5.8952 2.2742 1.2256 18 6 7.0529 1.5660 1.1856 19 6 7.5408 0.9821 2.3396 20 6 8.7410 0.2566 2.2400 21 6 9.3220 -0.3791 3.3474 22 6 10.4895 -1.0625 3.1914 23 6 11.1139 -1.1390 1.9472 24 6 10.5779 -0.5354 0.8517 25 6 9.3737 0.1798 0.9713 26 7 8.8117 0.7880 -0.0754 27 7 7.7115 1.4413 0.0369 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.5852 3.4690 0.8905 34 1 3.5844 3.4701 -0.8894 35 1 5.3438 3.2944 -2.3647 36 1 7.0185 1.0763 3.2803 37 1 8.8471 -0.3273 4.3160 38 1 10.9376 -1.5527 4.0431 39 1 12.0391 -1.6878 1.8508 40 1 11.0754 -0.6046 -0.1043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230239569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:40 Heat of formation + Delta-G solvation = -74.697384 kcal Electronic energy + Delta-G solvation = -25978.989981 eV Core-core repulsion = 22144.883612 eV Total energy + Delta-G solvation = -3834.106369 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37465 -41.62623 -39.93140 -38.35530 -37.65180 -35.76726 -34.33050 -33.03597 -32.38354 -32.03354 -30.56390 -27.85286 -26.44408 -25.24302 -24.59699 -23.66398 -23.10370 -21.83173 -20.21292 -19.86352 -19.13739 -18.38846 -18.04406 -17.73648 -17.24040 -17.00778 -16.70925 -15.75874 -15.68133 -15.58978 -15.39960 -15.32814 -14.86205 -14.47654 -14.35354 -13.98327 -13.75036 -13.42616 -13.35479 -13.29258 -12.95339 -12.89108 -12.84618 -12.72964 -12.57574 -12.20777 -11.96760 -11.88322 -11.65515 -11.61203 -11.43904 -10.75262 -10.59607 -10.53432 -10.09562 -9.09278 -8.73658 -6.53501 -0.99423 -0.21147 0.81471 1.08915 1.49621 1.54507 1.65431 1.77835 1.89804 2.12921 2.50382 2.93081 3.03383 3.10854 3.36467 3.52888 3.72244 3.81703 3.89105 3.91057 4.02853 4.19337 4.20114 4.23845 4.25324 4.29601 4.49196 4.55025 4.67436 4.80120 4.85669 4.90260 4.99403 5.02896 5.10714 5.18542 5.33438 5.35626 5.38333 5.69012 5.82835 5.87880 6.36292 6.39940 6.66972 7.29543 7.62233 8.61025 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.005114 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.492589 B = 5473.993773 C = 7981.730315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.047 3.953 3 O -0.361 6.361 4 C 0.465 3.535 5 O -0.538 6.538 6 C -0.098 4.098 7 C 0.217 3.783 8 H 0.029 0.971 9 C -0.623 4.623 10 H 0.052 0.948 11 C -0.008 4.008 12 N -0.912 5.912 13 Si 1.114 2.886 14 H -0.278 1.278 15 H -0.258 1.258 16 H -0.285 1.285 17 O -0.311 6.311 18 C 0.247 3.753 19 C -0.145 4.145 20 C -0.042 4.042 21 C -0.119 4.119 22 C -0.071 4.071 23 C -0.093 4.093 24 C -0.090 4.090 25 C 0.005 3.995 26 N -0.213 5.213 27 N -0.297 5.297 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.257 0.743 36 H 0.179 0.821 37 H 0.165 0.835 38 H 0.180 0.820 39 H 0.177 0.823 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 -11.371 12.861 17.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.026 4.026 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.428 6.428 6 C -0.136 4.136 7 C 0.161 3.839 8 H 0.047 0.953 9 C -0.660 4.660 10 H 0.070 0.930 11 C -0.209 4.209 12 N -0.547 5.547 13 Si 0.935 3.065 14 H -0.203 1.203 15 H -0.182 1.182 16 H -0.211 1.211 17 O -0.217 6.217 18 C 0.072 3.928 19 C -0.176 4.176 20 C -0.050 4.050 21 C -0.138 4.138 22 C -0.091 4.091 23 C -0.114 4.114 24 C -0.111 4.111 25 C -0.128 4.128 26 N -0.067 5.067 27 N -0.160 5.160 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.067 0.933 36 H 0.196 0.804 37 H 0.183 0.817 38 H 0.198 0.802 39 H 0.194 0.806 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.513 -10.066 10.404 14.693 hybrid contribution -0.795 -1.426 1.722 2.373 sum 1.718 -11.492 12.125 16.794 Atomic orbital electron populations 1.21813 0.89474 1.04604 1.03876 1.23338 0.97741 0.79413 1.02096 1.86540 1.23613 1.33831 1.83824 1.24339 0.80660 0.93135 0.70933 1.90607 1.61247 1.44140 1.46805 1.21868 0.95589 0.89811 1.06294 1.19825 0.89143 0.93200 0.81687 0.95344 1.22290 1.47128 1.00945 0.95630 0.92987 1.27206 0.94606 1.07802 0.91328 1.70925 1.37383 1.14195 1.32239 0.82984 0.75483 0.71291 0.76746 1.20274 1.18201 1.21121 1.86037 1.34075 1.63196 1.38345 1.21359 0.88328 0.91113 0.92002 1.21784 0.97419 0.99946 0.98479 1.18966 0.93662 0.96717 0.95660 1.21268 0.97359 0.97880 0.97261 1.21636 0.93324 0.95219 0.98879 1.21480 1.01059 0.97539 0.91284 1.21003 0.92031 0.96153 1.01904 1.20954 0.99447 1.01275 0.91150 1.73503 1.02217 1.03286 1.27650 1.73017 1.04173 1.14593 1.24240 0.90871 0.91313 0.87679 0.92187 0.91532 0.86250 0.87032 0.93256 0.80371 0.81702 0.80220 0.80585 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 10.29 71.98 0.74 -1.98 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.36 -13.26 10.22 -51.33 -0.52 -13.79 16 4 C 0.46 20.59 7.84 71.24 0.56 21.15 16 5 O -0.54 -26.91 15.18 26.93 0.41 -26.51 16 6 C -0.10 -4.56 5.38 29.85 0.16 -4.40 16 7 C 0.22 11.84 1.04 29.85 0.03 11.87 16 8 H 0.03 1.78 5.60 -2.38 -0.01 1.77 16 9 C -0.62 -35.82 8.64 25.60 0.22 -35.60 16 10 H 0.05 3.00 7.82 -2.91 -0.02 2.98 16 11 C -0.01 -0.47 5.45 84.66 0.46 -0.01 16 12 N -0.91 -55.65 13.63 21.45 0.29 -55.36 16 13 Si 1.11 51.07 29.91 68.60 2.05 53.12 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 16 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 17 O -0.31 -16.15 9.02 -77.69 -0.70 -16.85 16 18 C 0.25 12.25 7.51 84.52 0.63 12.89 16 19 C -0.15 -5.55 9.94 22.84 0.23 -5.33 16 20 C -0.04 -1.38 5.75 -21.28 -0.12 -1.50 16 21 C -0.12 -2.48 9.81 22.29 0.22 -2.26 16 22 C -0.07 -1.04 9.96 22.07 0.22 -0.82 16 23 C -0.09 -1.53 9.94 22.05 0.22 -1.31 16 24 C -0.09 -2.37 10.01 22.33 0.22 -2.15 16 25 C 0.00 0.17 6.69 40.39 0.27 0.44 16 26 N -0.21 -10.15 11.54 -51.95 -0.60 -10.75 16 27 N -0.30 -16.04 9.78 -170.10 -1.66 -17.70 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 33 H 0.12 5.01 8.14 -2.39 -0.02 4.99 16 34 H 0.11 5.32 7.84 -2.39 -0.02 5.30 16 35 H 0.26 16.10 6.39 -92.71 -0.59 15.51 16 36 H 0.18 5.45 8.06 -2.91 -0.02 5.43 16 37 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 38 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 39 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -82.30 351.79 5.01 -77.29 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.24 Total: 17.74 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 4.51 Total: -7.20 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.97 Total: -83.81 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -0.82 Total: -57.14 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.05 Total: 53.12 kcal Total: -82.30 5.01 -77.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230239569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.592 kcal (2) G-P(sol) polarization free energy of solvation -82.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds