Wall clock time and date at job start Tue Mar 31 2020 11:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.46915 * 2 1 4 4 C 1.34222 * 116.99967 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47357 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47270 * 55.00049 * 7 6 4 9 9 C 1.50699 * 109.47190 * 175.00066 * 7 6 4 10 10 H 1.08005 * 119.99679 * 240.00056 * 9 7 6 11 11 C 1.37880 * 120.00240 * 60.00100 * 9 7 6 12 12 N 1.31514 * 119.99469 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00137 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47273 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46838 * 120.00392 * 13 11 9 16 16 H 1.48501 * 109.47064 * 239.99848 * 13 11 9 17 17 O 1.42897 * 109.47388 * 295.00217 * 7 6 4 18 18 C 1.35564 * 117.00454 * 149.99537 * 17 7 6 19 19 C 1.40141 * 119.15579 * 180.02562 * 18 17 7 20 20 C 1.36349 * 119.90252 * 180.02562 * 19 18 17 21 21 C 1.40747 * 118.07439 * 359.96439 * 20 19 18 22 22 C 1.40476 * 122.21534 * 180.02562 * 21 20 19 23 23 C 1.36307 * 118.66026 * 180.22627 * 22 21 20 24 24 N 1.32504 * 121.72813 * 359.47189 * 23 22 21 25 25 C 1.31204 * 122.82861 * 0.54996 * 24 23 22 26 26 C 1.40546 * 119.99754 * 359.72675 * 25 24 23 27 27 N 1.31561 * 119.14865 * 0.02562 * 18 17 7 28 28 H 1.08996 * 109.47034 * 300.00387 * 1 2 3 29 29 H 1.09008 * 109.46519 * 60.00204 * 1 2 3 30 30 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47394 * 239.99951 * 2 1 3 32 32 H 1.08998 * 109.46765 * 119.99325 * 2 1 3 33 33 H 1.09008 * 109.47046 * 60.00045 * 6 4 3 34 34 H 1.09000 * 109.47478 * 300.00070 * 6 4 3 35 35 H 0.96999 * 119.99938 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.04357 * 0.03095 * 19 18 17 37 37 H 1.08003 * 120.96612 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.66561 * 359.94369 * 22 21 20 39 39 H 1.08005 * 119.13006 * 179.73976 * 23 22 21 40 40 H 1.07999 * 120.00169 * 179.70952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7807 2.2494 -0.8425 9 6 6.0243 4.2446 -0.1255 10 1 6.6591 4.4926 -0.9633 11 6 5.7406 5.1971 0.8302 12 7 4.9680 4.8948 1.8507 13 14 6.4548 6.9163 0.6763 14 1 7.2853 6.9992 -0.5520 15 1 5.3503 7.9055 0.5944 16 1 7.2960 7.2109 1.8641 17 8 5.8945 2.2645 1.2202 18 6 7.0504 1.5577 1.1753 19 6 7.5291 0.9565 2.3472 20 6 8.6904 0.2426 2.3194 21 6 9.3732 0.1358 1.0932 22 6 10.5759 -0.5786 0.9655 23 6 11.1786 -0.6311 -0.2559 24 7 10.6540 -0.0372 -1.3179 25 6 9.5349 0.6460 -1.2705 26 6 8.8361 0.7666 -0.0570 27 7 7.6940 1.4539 0.0325 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.5850 3.4699 0.8889 34 1 3.5844 3.4694 -0.8911 35 1 4.7681 5.5649 2.5229 36 1 6.9789 1.0584 3.2708 37 1 9.0753 -0.2275 3.2123 38 1 11.0166 -1.0724 1.8190 39 1 12.1058 -1.1748 -0.3618 40 1 9.1507 1.1159 -2.1638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230729275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:51 Heat of formation + Delta-G solvation = -61.030074 kcal Electronic energy + Delta-G solvation = -26178.243077 eV Core-core repulsion = 22344.729368 eV Total energy + Delta-G solvation = -3833.513710 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68062 -39.81891 -38.41887 -36.56373 -35.78059 -33.34521 -33.09250 -31.61824 -30.90457 -30.19887 -29.30201 -26.33591 -24.43085 -23.48201 -23.14462 -22.38561 -21.50042 -19.90331 -18.51248 -17.61230 -17.18830 -16.97517 -16.17650 -16.08895 -15.64260 -15.28829 -14.71629 -14.55670 -14.47146 -14.10195 -13.88023 -13.49643 -13.46457 -13.03545 -12.67973 -12.58519 -12.42289 -12.22429 -11.86840 -11.69193 -11.47173 -11.34720 -11.14467 -11.07216 -10.82382 -10.55059 -10.28499 -10.16820 -9.74813 -9.66742 -9.44853 -9.26274 -8.82822 -8.68925 -8.47361 -7.50696 -6.26898 -4.43464 0.67369 1.29449 2.30826 2.98123 3.15601 3.26136 3.29151 3.32437 3.51312 4.09945 4.24500 4.59909 4.66199 4.76912 4.90175 5.03898 5.06358 5.11014 5.13607 5.21775 5.36479 5.45186 5.47322 5.61748 5.87453 5.89413 5.91829 6.04768 6.06289 6.07912 6.11778 6.31548 6.49299 6.56632 6.66756 6.85577 6.94616 7.04527 7.30116 7.67729 7.93378 8.18318 8.37194 8.47997 8.58987 8.78403 9.32585 10.75273 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.005277 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.977226 B = 5304.973487 C = 7442.657931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.105 4.105 7 C 0.225 3.775 8 H 0.056 0.944 9 C -0.540 4.540 10 H 0.071 0.929 11 C 0.080 3.920 12 N -0.865 5.865 13 Si 0.896 3.104 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.282 1.282 17 O -0.273 6.273 18 C 0.393 3.607 19 C -0.159 4.159 20 C -0.049 4.049 21 C -0.131 4.131 22 C -0.126 4.126 23 C 0.036 3.964 24 N -0.475 5.475 25 C 0.141 3.859 26 C 0.128 3.872 27 N -0.522 5.522 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.266 0.734 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.147 0.853 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.290 -8.741 0.729 8.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.142 4.142 7 C 0.171 3.829 8 H 0.074 0.926 9 C -0.577 4.577 10 H 0.089 0.911 11 C -0.127 4.127 12 N -0.501 5.501 13 Si 0.723 3.277 14 H -0.194 1.194 15 H -0.205 1.205 16 H -0.208 1.208 17 O -0.174 6.174 18 C 0.200 3.800 19 C -0.182 4.182 20 C -0.073 4.073 21 C -0.139 4.139 22 C -0.147 4.147 23 C -0.107 4.107 24 N -0.184 5.184 25 C -0.031 4.031 26 C 0.003 3.997 27 N -0.252 5.252 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.157 0.843 34 H 0.122 0.878 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.149 0.851 39 H 0.165 0.835 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.165 -8.672 -0.392 8.682 hybrid contribution 0.235 0.497 1.580 1.673 sum 0.070 -8.175 1.189 8.261 Atomic orbital electron populations 1.21780 0.93277 1.02328 1.03345 1.22853 0.94869 0.81788 1.02005 1.86577 1.26139 1.30974 1.84709 1.24929 0.79494 0.94329 0.71146 1.90598 1.60211 1.43665 1.45899 1.21922 0.96883 0.88115 1.07300 1.19832 0.87844 0.92946 0.82254 0.92578 1.21432 1.31913 0.94222 1.10159 0.91089 1.25111 0.93878 0.99118 0.94544 1.69862 1.34762 1.34449 1.11038 0.86470 0.79196 0.83559 0.78498 1.19372 1.20546 1.20793 1.86442 1.31710 1.59270 1.39973 1.20201 0.86646 0.85049 0.88094 1.21186 0.97822 1.00256 0.98888 1.21097 0.93448 0.96206 0.96591 1.18810 0.97666 1.02262 0.95144 1.21729 0.94805 0.99006 0.99134 1.21961 1.00257 0.99955 0.88557 1.67368 1.11342 1.07510 1.32143 1.22927 0.89607 0.94517 0.96091 1.19611 0.92149 0.93840 0.94129 1.67845 1.08990 1.21875 1.26483 0.91600 0.91675 0.90847 0.91873 0.91807 0.84313 0.87762 0.92351 0.84068 0.84197 0.85145 0.83535 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.66 10.22 -39.24 -0.40 -7.06 16 4 C 0.46 9.57 7.84 36.01 0.28 9.85 16 5 O -0.52 -11.89 15.17 -24.05 -0.36 -12.25 16 6 C -0.10 -2.31 5.22 -27.88 -0.15 -2.45 16 7 C 0.23 5.49 1.57 -27.88 -0.04 5.45 16 8 H 0.06 1.41 6.77 -51.93 -0.35 1.06 16 9 C -0.54 -13.93 8.90 -34.44 -0.31 -14.24 16 10 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 11 C 0.08 2.03 5.24 -17.82 -0.09 1.94 16 12 N -0.86 -22.36 10.93 55.43 0.61 -21.76 16 13 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 14 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 O -0.27 -6.76 8.37 -32.82 -0.27 -7.04 16 18 C 0.39 8.89 7.45 -16.95 -0.13 8.77 16 19 C -0.16 -2.96 9.95 -39.55 -0.39 -3.35 16 20 C -0.05 -0.77 9.93 -39.31 -0.39 -1.16 16 21 C -0.13 -2.22 5.75 -106.76 -0.61 -2.84 16 22 C -0.13 -1.75 9.88 -39.43 -0.39 -2.14 16 23 C 0.04 0.52 11.08 -17.96 -0.20 0.32 16 24 N -0.47 -7.90 10.29 -13.12 -0.14 -8.03 16 25 C 0.14 2.52 11.25 -16.95 -0.19 2.33 16 26 C 0.13 2.51 6.62 -84.89 -0.56 1.95 16 27 N -0.52 -11.67 8.59 -11.02 -0.09 -11.76 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.24 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 32 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.14 3.29 6.22 -51.92 -0.32 2.96 16 34 H 0.10 2.10 8.14 -51.93 -0.42 1.68 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.14 2.35 8.06 -52.49 -0.42 1.93 16 37 H 0.14 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 39 H 0.15 1.59 8.06 -52.48 -0.42 1.16 16 40 H 0.17 2.72 8.06 -52.49 -0.42 2.29 16 LS Contribution 349.83 15.07 5.27 5.27 Total: -1.00 -30.31 349.83 -7.84 -38.15 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -4.87 Total: 5.19 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -2.56 Total: 4.30 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.38 Total: -41.55 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -1.04 Total: -26.35 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.31 -7.84 -38.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230729275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.881 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds