Wall clock time and date at job start Tue Mar 31 2020 11:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45202 * 109.46915 * 2 1 4 4 C 1.34222 * 116.99967 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00357 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00218 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.47357 * 179.97438 * 6 4 3 8 8 H 1.08999 * 109.47270 * 55.00049 * 7 6 4 9 9 C 1.50699 * 109.47190 * 175.00066 * 7 6 4 10 10 H 1.08005 * 119.99679 * 240.00056 * 9 7 6 11 11 C 1.37880 * 120.00240 * 60.00100 * 9 7 6 12 12 N 1.31514 * 119.99469 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00137 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47273 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46838 * 120.00392 * 13 11 9 16 16 H 1.48501 * 109.47064 * 239.99848 * 13 11 9 17 17 O 1.42897 * 109.47388 * 295.00217 * 7 6 4 18 18 C 1.35564 * 117.00454 * 149.99537 * 17 7 6 19 19 C 1.40141 * 119.15579 * 180.02562 * 18 17 7 20 20 C 1.36349 * 119.90252 * 180.02562 * 19 18 17 21 21 C 1.40747 * 118.07439 * 359.96439 * 20 19 18 22 22 C 1.40476 * 122.21534 * 180.02562 * 21 20 19 23 23 C 1.36307 * 118.66026 * 180.22627 * 22 21 20 24 24 N 1.32504 * 121.72813 * 359.47189 * 23 22 21 25 25 C 1.31204 * 122.82861 * 0.54996 * 24 23 22 26 26 C 1.40546 * 119.99754 * 359.72675 * 25 24 23 27 27 N 1.31561 * 119.14865 * 0.02562 * 18 17 7 28 28 H 1.08996 * 109.47034 * 300.00387 * 1 2 3 29 29 H 1.09008 * 109.46519 * 60.00204 * 1 2 3 30 30 H 1.09001 * 109.46898 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47394 * 239.99951 * 2 1 3 32 32 H 1.08998 * 109.46765 * 119.99325 * 2 1 3 33 33 H 1.09008 * 109.47046 * 60.00045 * 6 4 3 34 34 H 1.09000 * 109.47478 * 300.00070 * 6 4 3 35 35 H 0.96999 * 119.99938 * 180.02562 * 12 11 9 36 36 H 1.07998 * 120.04357 * 0.03095 * 19 18 17 37 37 H 1.08003 * 120.96612 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.66561 * 359.94369 * 22 21 20 39 39 H 1.08005 * 119.13006 * 179.73976 * 23 22 21 40 40 H 1.07999 * 120.00169 * 179.70952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8574 -0.0010 8 1 5.7807 2.2494 -0.8425 9 6 6.0243 4.2446 -0.1255 10 1 6.6591 4.4926 -0.9633 11 6 5.7406 5.1971 0.8302 12 7 4.9680 4.8948 1.8507 13 14 6.4548 6.9163 0.6763 14 1 7.2853 6.9992 -0.5520 15 1 5.3503 7.9055 0.5944 16 1 7.2960 7.2109 1.8641 17 8 5.8945 2.2645 1.2202 18 6 7.0504 1.5577 1.1753 19 6 7.5291 0.9565 2.3472 20 6 8.6904 0.2426 2.3194 21 6 9.3732 0.1358 1.0932 22 6 10.5759 -0.5786 0.9655 23 6 11.1786 -0.6311 -0.2559 24 7 10.6540 -0.0372 -1.3179 25 6 9.5349 0.6460 -1.2705 26 6 8.8361 0.7666 -0.0570 27 7 7.6940 1.4539 0.0325 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.5850 3.4699 0.8889 34 1 3.5844 3.4694 -0.8911 35 1 4.7681 5.5649 2.5229 36 1 6.9789 1.0584 3.2708 37 1 9.0753 -0.2275 3.2123 38 1 11.0166 -1.0724 1.8190 39 1 12.1058 -1.1748 -0.3618 40 1 9.1507 1.1159 -2.1638 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230729275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:50 Heat of formation + Delta-G solvation = -79.642220 kcal Electronic energy + Delta-G solvation = -26179.050161 eV Core-core repulsion = 22344.729368 eV Total energy + Delta-G solvation = -3834.320793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.06303 -41.42712 -39.93912 -38.06623 -37.36151 -35.14825 -34.50817 -32.94551 -32.32766 -31.67354 -30.70554 -28.18109 -25.89154 -24.87183 -24.48481 -23.71082 -22.99492 -21.56025 -20.00626 -19.21630 -18.71810 -18.39710 -17.77902 -17.61292 -17.27711 -16.82079 -16.44905 -16.10777 -15.83543 -15.33388 -15.18807 -15.03798 -14.78728 -14.44128 -14.09072 -13.92479 -13.85961 -13.66194 -13.31585 -12.97994 -12.90293 -12.88860 -12.83572 -12.59833 -12.47547 -12.26342 -11.70575 -11.53605 -11.47945 -11.42670 -11.03046 -10.86879 -10.70635 -10.17333 -9.81527 -8.99383 -8.19929 -6.43465 -0.62336 -0.09058 0.99912 1.29466 1.37707 1.42283 1.52890 1.81665 2.15035 2.37660 2.52070 3.12585 3.20573 3.35379 3.52768 3.66690 3.81795 3.94777 3.97014 3.99214 4.12081 4.23853 4.33386 4.38812 4.51441 4.62680 4.72843 4.77441 4.80344 4.86135 4.87200 4.92034 5.03053 5.13451 5.19367 5.37009 5.50044 5.52483 5.66091 5.73013 6.02222 6.51738 6.81903 6.88093 6.94576 7.13889 7.35381 8.81671 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009118 B = 0.005277 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.977226 B = 5304.973487 C = 7442.657931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.540 6.540 6 C -0.099 4.099 7 C 0.232 3.768 8 H 0.033 0.967 9 C -0.559 4.559 10 H 0.053 0.947 11 C 0.046 3.954 12 N -0.882 5.882 13 Si 0.952 3.048 14 H -0.275 1.275 15 H -0.266 1.266 16 H -0.283 1.283 17 O -0.296 6.296 18 C 0.357 3.643 19 C -0.185 4.185 20 C -0.019 4.019 21 C -0.142 4.142 22 C -0.106 4.106 23 C 0.034 3.966 24 N -0.480 5.480 25 C 0.119 3.881 26 C 0.094 3.906 27 N -0.555 5.555 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.270 0.730 36 H 0.154 0.846 37 H 0.196 0.804 38 H 0.183 0.817 39 H 0.190 0.810 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 -10.363 2.156 10.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.310 3.690 5 O -0.430 6.430 6 C -0.137 4.137 7 C 0.178 3.822 8 H 0.051 0.949 9 C -0.596 4.596 10 H 0.072 0.928 11 C -0.158 4.158 12 N -0.518 5.518 13 Si 0.777 3.223 14 H -0.199 1.199 15 H -0.191 1.191 16 H -0.209 1.209 17 O -0.199 6.199 18 C 0.165 3.835 19 C -0.207 4.207 20 C -0.043 4.043 21 C -0.150 4.150 22 C -0.126 4.126 23 C -0.110 4.110 24 N -0.189 5.189 25 C -0.052 4.052 26 C -0.030 4.030 27 N -0.286 5.286 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.172 0.828 37 H 0.213 0.787 38 H 0.200 0.800 39 H 0.206 0.794 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 1.128 -10.302 1.014 10.413 hybrid contribution -0.007 0.785 1.108 1.359 sum 1.120 -9.517 2.123 9.815 Atomic orbital electron populations 1.21809 0.89829 1.04446 1.03742 1.23276 0.97510 0.79701 1.01993 1.86548 1.24186 1.33519 1.84009 1.24547 0.80365 0.93457 0.70659 1.90582 1.61079 1.44222 1.47150 1.21723 0.95817 0.89044 1.07085 1.19591 0.88925 0.91822 0.81910 0.94859 1.21486 1.32401 0.95576 1.10171 0.92840 1.25653 0.94122 1.01900 0.94146 1.69949 1.35210 1.35340 1.11319 0.85609 0.78704 0.80087 0.77864 1.19937 1.19109 1.20891 1.86358 1.33338 1.60647 1.39528 1.20710 0.86594 0.86418 0.89805 1.21382 0.99611 1.01686 0.97994 1.21675 0.91300 0.93583 0.97790 1.19227 0.98944 1.02102 0.94719 1.22230 0.92704 0.96958 1.00678 1.22747 1.01277 0.98944 0.88060 1.67412 1.10562 1.07208 1.33688 1.22882 0.90544 0.95953 0.95832 1.19947 0.92033 0.95015 0.96022 1.67693 1.10464 1.23193 1.27234 0.91382 0.91087 0.87807 0.91722 0.92120 0.85752 0.86595 0.92086 0.82833 0.78671 0.80000 0.79353 0.82183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.40 6.19 71.98 0.45 1.84 16 3 O -0.37 -13.50 10.22 -51.34 -0.52 -14.03 16 4 C 0.46 20.32 7.84 71.24 0.56 20.87 16 5 O -0.54 -26.11 15.17 27.03 0.41 -25.70 16 6 C -0.10 -4.61 5.22 29.85 0.16 -4.45 16 7 C 0.23 12.07 1.57 29.85 0.05 12.12 16 8 H 0.03 1.83 6.77 -2.39 -0.02 1.81 16 9 C -0.56 -30.47 8.90 25.60 0.23 -30.24 16 10 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 11 C 0.05 2.43 5.24 84.66 0.44 2.87 16 12 N -0.88 -46.85 10.93 21.45 0.23 -46.61 16 13 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 16 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 17 O -0.30 -15.54 8.37 -74.91 -0.63 -16.16 16 18 C 0.36 16.97 7.45 85.20 0.64 17.61 16 19 C -0.18 -6.87 9.95 22.29 0.22 -6.64 16 20 C -0.02 -0.55 9.93 22.44 0.22 -0.33 16 21 C -0.14 -4.52 5.75 -21.25 -0.12 -4.64 16 22 C -0.11 -2.44 9.88 22.36 0.22 -2.22 16 23 C 0.03 0.83 11.08 84.14 0.93 1.76 16 24 N -0.48 -15.36 10.29 -195.43 -2.01 -17.37 16 25 C 0.12 4.38 11.25 85.35 0.96 5.34 16 26 C 0.09 3.76 6.62 40.31 0.27 4.03 16 27 N -0.56 -26.35 8.59 -302.06 -2.59 -28.94 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 32 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.12 6.19 6.22 -2.38 -0.01 6.17 16 34 H 0.12 4.93 8.14 -2.39 -0.02 4.91 16 35 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 36 H 0.15 5.12 8.06 -2.91 -0.02 5.09 16 37 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 38 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 39 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.16 5.74 8.06 -2.91 -0.02 5.71 16 Total: -1.00 -70.90 349.83 3.93 -66.96 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 1.06 Total: 21.94 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 5.96 Total: 15.91 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -4.37 Total: -92.93 kcal Atomic # 8 Polarization: -55.15 SS G_CDS: -0.74 Total: -55.89 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -70.90 3.93 -66.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230729275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.680 kcal (2) G-P(sol) polarization free energy of solvation -70.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds