Wall clock time and date at job start Tue Mar 31 2020 11:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34813 * 117.00485 * 2 1 4 4 O 1.21565 * 119.99654 * 0.02562 * 3 2 1 5 5 C 1.47009 * 120.00527 * 179.97438 * 3 2 1 6 6 C 1.38070 * 126.44988 * 180.02562 * 5 3 2 7 7 C 1.39649 * 107.63585 * 180.02562 * 6 5 3 8 8 O 1.36007 * 125.66374 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99882 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47352 * 329.99932 * 9 8 7 11 11 C 1.50703 * 109.46982 * 90.00296 * 9 8 7 12 12 H 1.07998 * 119.99711 * 240.00042 * 11 9 8 13 13 C 1.37875 * 120.00415 * 59.99554 * 11 9 8 14 14 N 1.31513 * 119.99791 * 0.02562 * 13 11 9 15 15 Si 1.86799 * 120.00254 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47108 * 359.97438 * 15 13 11 17 17 H 1.48496 * 109.47207 * 120.00259 * 15 13 11 18 18 H 1.48497 * 109.46876 * 239.99977 * 15 13 11 19 19 C 1.50702 * 109.47143 * 209.99672 * 9 8 7 20 20 C 1.38234 * 119.99895 * 324.73138 * 19 9 8 21 21 C 1.38240 * 120.00061 * 180.34228 * 20 19 9 22 22 C 1.38234 * 119.99667 * 359.88520 * 21 20 19 23 23 C 1.38234 * 120.00244 * 0.09088 * 22 21 20 24 24 C 1.38230 * 119.99880 * 359.97438 * 23 22 21 25 25 N 1.31229 * 108.67743 * 0.22954 * 7 6 5 26 26 N 1.36723 * 126.44448 * 0.03150 * 5 3 2 27 27 C 1.46495 * 126.09783 * 0.02562 * 26 5 3 28 28 H 1.08994 * 109.47396 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46904 * 300.00003 * 1 2 3 30 30 H 1.08993 * 109.47089 * 60.00052 * 1 2 3 31 31 H 1.08002 * 126.18118 * 0.04291 * 6 5 3 32 32 H 0.97005 * 120.00732 * 180.02562 * 14 13 11 33 33 H 1.08001 * 120.00279 * 0.27436 * 20 19 9 34 34 H 1.07996 * 119.99812 * 180.02562 * 21 20 19 35 35 H 1.07999 * 119.99733 * 180.10835 * 22 21 20 36 36 H 1.08001 * 119.99769 * 180.02562 * 23 22 21 37 37 H 1.08000 * 120.00376 * 180.02562 * 24 23 22 38 38 H 1.09006 * 109.46876 * 90.01152 * 27 26 5 39 39 H 1.09005 * 109.47231 * 210.00251 * 27 26 5 40 40 H 1.08999 * 109.47423 * 330.00665 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2011 0.0000 4 8 1.4021 2.2207 0.0005 5 6 3.5322 1.2781 0.0006 6 6 4.2932 2.4301 0.0011 7 6 5.6369 2.0495 0.0010 8 8 6.7009 2.8966 0.0009 9 6 8.0015 2.3045 0.0013 10 1 7.9633 1.3442 0.5153 11 6 8.4589 2.0960 -1.4195 12 1 8.6884 1.1015 -1.7724 13 6 8.5843 3.1749 -2.2688 14 7 8.3052 4.3861 -1.8389 15 14 9.1506 2.9164 -4.0300 16 1 9.3993 1.4710 -4.2628 17 1 8.0994 3.3950 -4.9632 18 1 10.4039 3.6777 -4.2637 19 6 8.9684 3.2165 0.7115 20 6 8.8334 4.5878 0.6011 21 6 9.7246 5.4243 1.2468 22 6 10.7494 4.8895 2.0048 23 6 10.8841 3.5182 2.1157 24 6 9.9938 2.6818 1.4689 25 7 5.7024 0.7389 -0.0047 26 7 4.4008 0.2223 0.0005 27 6 4.0351 -1.1963 -0.0006 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 3.9173 3.4426 0.0019 32 1 8.3930 5.1452 -2.4364 33 1 8.0323 5.0057 0.0094 34 1 9.6188 6.4957 1.1609 35 1 11.4446 5.5430 2.5107 36 1 11.6846 3.1004 2.7083 37 1 10.0987 1.6104 1.5557 38 1 3.9453 -1.5475 -1.0287 39 1 4.8058 -1.7707 0.5135 40 1 3.0822 -1.3263 0.5123 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231357421.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:10 Heat of formation + Delta-G solvation = -15.570262 kcal Electronic energy + Delta-G solvation = -26013.762920 eV Core-core repulsion = 22182.220496 eV Total energy + Delta-G solvation = -3831.542424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.42332 -41.12980 -40.03562 -38.43575 -37.68045 -35.07612 -33.57399 -32.21502 -31.75169 -31.30475 -28.96456 -28.66550 -27.29260 -25.10228 -24.69027 -23.15110 -22.18932 -21.76256 -21.21740 -19.55588 -18.41993 -18.09676 -17.70057 -17.61312 -17.14116 -16.72600 -16.47673 -16.36705 -15.66906 -15.31253 -15.08088 -14.94527 -14.79487 -14.38372 -14.35480 -14.04938 -13.80396 -13.53583 -13.29402 -13.25618 -12.99544 -12.89170 -12.84154 -12.36570 -12.28332 -12.10181 -11.89715 -11.81020 -11.61232 -11.12481 -11.05264 -10.78699 -10.09601 -9.48044 -9.26876 -9.18829 -7.99228 -6.41958 -0.24493 0.77490 0.95646 1.21271 1.34618 1.37712 1.45566 1.47597 1.51573 1.92623 2.35373 2.70323 3.17189 3.30064 3.49614 3.63014 4.28035 4.30263 4.34691 4.37666 4.37796 4.40242 4.47645 4.53715 4.61911 4.66442 4.71660 4.79077 4.84313 4.98799 5.05255 5.09901 5.18404 5.41517 5.58257 5.66269 5.82291 5.84462 5.95937 6.07771 6.30683 6.38398 6.46948 6.54248 6.64130 7.03079 7.36271 8.80875 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014583 B = 0.003926 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.625021 B = 7129.821776 C = 7915.785444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.347 6.347 3 C 0.553 3.447 4 O -0.509 6.509 5 C 0.054 3.946 6 C -0.216 4.216 7 C 0.258 3.742 8 O -0.292 6.292 9 C 0.248 3.752 10 H 0.032 0.968 11 C -0.554 4.554 12 H 0.053 0.947 13 C 0.043 3.957 14 N -0.859 5.859 15 Si 0.950 3.050 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.275 1.275 19 C -0.074 4.074 20 C -0.068 4.068 21 C -0.158 4.158 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.138 4.138 25 N -0.330 5.330 26 N -0.337 5.337 27 C 0.094 3.906 28 H 0.144 0.856 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.265 0.735 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 -8.491 5.573 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.396 3.604 4 O -0.396 6.396 5 C -0.075 4.075 6 C -0.248 4.248 7 C 0.058 3.942 8 O -0.195 6.195 9 C 0.194 3.806 10 H 0.050 0.950 11 C -0.591 4.591 12 H 0.071 0.929 13 C -0.161 4.161 14 N -0.494 5.494 15 Si 0.775 3.225 16 H -0.196 1.196 17 H -0.205 1.205 18 H -0.200 1.200 19 C -0.075 4.075 20 C -0.087 4.087 21 C -0.176 4.176 22 C -0.154 4.154 23 C -0.160 4.160 24 C -0.156 4.156 25 N -0.175 5.175 26 N -0.127 5.127 27 C -0.045 4.045 28 H 0.162 0.838 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.075 0.925 33 H 0.155 0.845 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.621 -8.804 5.509 14.158 hybrid contribution -0.141 0.685 -1.308 1.484 sum -9.763 -8.119 4.201 13.374 Atomic orbital electron populations 1.23750 0.73066 1.06577 1.03101 1.86572 1.26181 1.29838 1.83673 1.19449 0.85653 0.82581 0.72733 1.90895 1.65567 1.36868 1.46263 1.20075 0.88623 0.88590 1.10205 1.21164 0.89156 0.99411 1.15084 1.20662 0.89680 0.88291 0.95600 1.86511 1.14013 1.31836 1.87114 1.18798 0.77034 0.90099 0.94665 0.95044 1.21493 1.47508 0.93744 0.96339 0.92907 1.25654 0.93762 0.94809 1.01919 1.70000 1.45406 0.98836 1.35207 0.85647 0.78092 0.78353 0.80410 1.19617 1.20515 1.20018 1.19949 0.97281 0.95155 0.95114 1.21679 1.00164 0.93210 0.93686 1.21400 0.97007 0.99814 0.99370 1.21291 0.98597 0.95453 1.00065 1.21151 0.99767 0.93715 1.01367 1.21003 0.96213 0.99778 0.98632 1.77541 0.99147 1.09729 1.31107 1.48882 1.01329 1.07282 1.55166 1.22440 1.03669 0.73145 1.05244 0.83803 0.91333 0.91611 0.82148 0.92546 0.84546 0.85865 0.84073 0.83963 0.86721 0.89076 0.88099 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.57 113.37 1.20 1.53 16 2 O -0.35 -6.89 8.06 -57.25 -0.46 -7.36 16 3 C 0.55 15.89 7.94 70.12 0.56 16.44 16 4 O -0.51 -16.78 16.69 19.62 0.33 -16.45 16 5 C 0.05 1.87 6.95 40.64 0.28 2.15 16 6 C -0.22 -8.97 10.63 22.57 0.24 -8.73 16 7 C 0.26 12.35 7.80 85.12 0.66 13.01 16 8 O -0.29 -15.62 8.41 -93.62 -0.79 -16.41 16 9 C 0.25 13.15 2.48 29.10 0.07 13.22 16 10 H 0.03 1.66 7.19 -2.39 -0.02 1.64 16 11 C -0.55 -31.15 8.89 25.60 0.23 -30.92 16 12 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 13 C 0.04 2.37 5.24 84.65 0.44 2.82 16 14 N -0.86 -47.36 8.51 21.45 0.18 -47.18 16 15 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 19 C -0.07 -3.70 4.80 -19.87 -0.10 -3.80 16 20 C -0.07 -3.34 7.45 22.27 0.17 -3.18 16 21 C -0.16 -6.46 10.05 22.27 0.22 -6.24 16 22 C -0.14 -4.85 10.05 22.27 0.22 -4.62 16 23 C -0.14 -5.16 10.05 22.27 0.22 -4.93 16 24 C -0.14 -5.95 9.68 22.27 0.22 -5.73 16 25 N -0.33 -14.53 11.45 -170.77 -1.95 -16.49 16 26 N -0.34 -11.40 4.07 -356.36 -1.45 -12.84 16 27 C 0.09 1.96 10.95 127.77 1.40 3.36 16 28 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.16 6.40 8.06 -2.91 -0.02 6.37 16 32 H 0.26 13.87 8.31 -92.70 -0.77 13.10 16 33 H 0.14 7.38 5.52 -2.91 -0.02 7.36 16 34 H 0.12 4.43 8.06 -2.91 -0.02 4.40 16 35 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.12 1.87 6.20 -2.39 -0.01 1.86 16 Total: -1.00 -70.87 347.57 4.99 -65.88 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.06 Total: 20.59 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 6.04 Total: -15.62 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -3.22 Total: -76.51 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.92 Total: -40.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.87 4.99 -65.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231357421.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.310 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds