Wall clock time and date at job start Tue Mar 31 2020 11:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35873 * 116.99550 * 2 1 4 4 C 1.39133 * 121.07918 * 359.97438 * 3 2 1 5 5 N 1.31793 * 119.92614 * 179.97438 * 4 3 2 6 6 N 1.28293 * 122.43706 * 359.97438 * 5 4 3 7 7 C 1.32278 * 122.29749 * 0.02562 * 6 5 4 8 8 O 1.35795 * 120.13895 * 179.97438 * 7 6 5 9 9 C 1.42898 * 117.00137 * 359.97438 * 8 7 6 10 10 H 1.09003 * 109.47228 * 330.00361 * 9 8 7 11 11 C 1.50704 * 109.47059 * 89.99636 * 9 8 7 12 12 H 1.08002 * 120.00473 * 239.99866 * 11 9 8 13 13 C 1.37882 * 120.00025 * 60.00194 * 11 9 8 14 14 N 1.31513 * 119.99845 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 120.00013 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47166 * 90.00144 * 15 13 11 17 17 H 1.48504 * 109.46790 * 209.99882 * 15 13 11 18 18 H 1.48497 * 109.47019 * 329.99706 * 15 13 11 19 19 C 1.50694 * 109.47283 * 209.99671 * 9 8 7 20 20 C 1.38239 * 120.00053 * 324.72879 * 19 9 8 21 21 C 1.38232 * 119.99895 * 179.81286 * 20 19 9 22 22 C 1.38231 * 120.00293 * 0.39056 * 21 20 19 23 23 C 1.38243 * 120.00135 * 359.86200 * 22 21 20 24 24 C 1.38236 * 119.99445 * 359.95185 * 23 22 21 25 25 C 1.39519 * 119.71954 * 359.74344 * 7 6 5 26 26 O 1.35942 * 121.11579 * 180.28608 * 25 7 6 27 27 C 1.42902 * 117.00170 * 270.21569 * 26 25 7 28 28 H 1.09001 * 109.47103 * 60.00636 * 1 2 3 29 29 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00196 * 1 2 3 31 31 H 1.08007 * 120.03794 * 359.94846 * 4 3 2 32 32 H 0.97001 * 120.00000 * 180.02562 * 14 13 11 33 33 H 1.07998 * 119.99983 * 359.97438 * 20 19 9 34 34 H 1.08007 * 120.00114 * 180.23409 * 21 20 19 35 35 H 1.07997 * 120.00595 * 179.83934 * 22 21 20 36 36 H 1.07996 * 120.00440 * 179.97438 * 23 22 21 37 37 H 1.07998 * 120.00012 * 179.97438 * 24 23 22 38 38 H 1.08991 * 109.47383 * 180.02562 * 27 26 25 39 39 H 1.09004 * 109.47209 * 300.00289 * 27 26 25 40 40 H 1.09004 * 109.47195 * 59.99986 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 1.3101 2.3916 -0.0005 5 7 1.9318 3.5536 0.0000 6 7 3.2111 3.6495 0.0015 7 6 3.9995 2.5874 0.0021 8 8 5.3489 2.7399 0.0031 9 6 5.8506 4.0779 0.0030 10 1 5.1452 4.7304 -0.5117 11 6 6.0257 4.5489 1.4238 12 1 5.4850 5.4149 1.7762 13 6 6.8763 3.8744 2.2738 14 7 7.5344 2.8196 1.8449 15 14 7.0939 4.4586 4.0347 16 1 6.0943 3.7894 4.9054 17 1 8.4624 4.1215 4.5025 18 1 6.8981 5.9293 4.0960 19 6 7.1797 4.1160 -0.7063 20 6 8.0533 3.0503 -0.5950 21 6 9.2708 3.0836 -1.2488 22 6 9.6182 4.1859 -2.0071 23 6 8.7469 5.2538 -2.1141 24 6 7.5277 5.2188 -1.4635 25 6 3.4389 1.3098 0.0065 26 8 4.2223 0.1989 0.0131 27 6 4.6028 -0.3342 -1.2570 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.2306 2.3560 -0.0018 32 1 8.1326 2.3448 2.4430 33 1 7.7834 2.1907 0.0004 34 1 9.9517 2.2495 -1.1650 35 1 10.5705 4.2130 -2.5158 36 1 9.0185 6.1151 -2.7063 37 1 6.8472 6.0532 -1.5467 38 1 5.2244 -1.2172 -1.1090 39 1 3.7096 -0.6090 -1.8181 40 1 5.1643 0.4168 -1.8128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234828019.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:45 Heat of formation + Delta-G solvation = -26.957713 kcal Electronic energy + Delta-G solvation = -26867.202526 eV Core-core repulsion = 23035.166305 eV Total energy + Delta-G solvation = -3832.036221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.44554 -40.36543 -39.66904 -39.25185 -38.41771 -35.07272 -32.73380 -32.56393 -31.81763 -31.28087 -28.96139 -28.43804 -28.10627 -25.59048 -24.76245 -24.14507 -23.03502 -21.96946 -20.04287 -19.62086 -19.01926 -18.36582 -17.70371 -17.40495 -17.32382 -16.78817 -16.32670 -16.07369 -15.86952 -15.69052 -15.57454 -15.23813 -14.99039 -14.73097 -14.46552 -14.01672 -13.60080 -13.45977 -13.27649 -13.08384 -12.88042 -12.87336 -12.59565 -12.49836 -12.25020 -12.21450 -11.84295 -11.39821 -11.20980 -11.17764 -10.81232 -10.53760 -10.03485 -9.72813 -9.45594 -9.25266 -8.02008 -6.43713 -0.34981 0.06673 0.75485 0.93917 1.34253 1.36188 1.45667 1.67293 2.31228 2.34519 2.53348 2.67132 3.03487 3.22313 3.32140 3.38143 3.83962 3.96025 4.30247 4.32783 4.35796 4.38577 4.40023 4.40849 4.48509 4.54320 4.62720 4.69367 4.74471 4.85007 4.88835 5.06680 5.16224 5.39712 5.56966 5.62824 5.82548 5.83630 5.94162 6.06136 6.18465 6.31809 6.44706 6.53491 6.83527 7.32667 7.74451 8.77606 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.005122 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.994514 B = 5465.401537 C = 6253.022410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.305 6.305 3 C 0.145 3.855 4 C -0.058 4.058 5 N -0.200 5.200 6 N -0.338 5.338 7 C 0.290 3.710 8 O -0.281 6.281 9 C 0.242 3.758 10 H 0.043 0.957 11 C -0.551 4.551 12 H 0.054 0.946 13 C 0.042 3.958 14 N -0.857 5.857 15 Si 0.949 3.051 16 H -0.281 1.281 17 H -0.274 1.274 18 H -0.269 1.269 19 C -0.074 4.074 20 C -0.068 4.068 21 C -0.157 4.157 22 C -0.135 4.135 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.001 4.001 26 O -0.324 6.324 27 C 0.035 3.965 28 H 0.082 0.918 29 H 0.132 0.868 30 H 0.075 0.925 31 H 0.221 0.779 32 H 0.265 0.735 33 H 0.137 0.863 34 H 0.123 0.877 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.117 0.883 39 H 0.061 0.939 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.696 -6.568 -7.497 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.214 6.214 3 C 0.088 3.912 4 C -0.228 4.228 5 N -0.043 5.043 6 N -0.202 5.202 7 C 0.105 3.895 8 O -0.182 6.182 9 C 0.189 3.811 10 H 0.061 0.939 11 C -0.588 4.588 12 H 0.072 0.928 13 C -0.163 4.163 14 N -0.491 5.491 15 Si 0.774 3.226 16 H -0.207 1.207 17 H -0.199 1.199 18 H -0.194 1.194 19 C -0.075 4.075 20 C -0.087 4.087 21 C -0.175 4.175 22 C -0.153 4.153 23 C -0.159 4.159 24 C -0.155 4.155 25 C -0.058 4.058 26 O -0.238 6.238 27 C -0.059 4.059 28 H 0.100 0.900 29 H 0.150 0.850 30 H 0.094 0.906 31 H 0.238 0.762 32 H 0.075 0.925 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.192 -5.650 -7.288 12.335 hybrid contribution 0.073 -0.820 1.144 1.409 sum -8.120 -6.470 -6.144 12.064 Atomic orbital electron populations 1.23718 0.74478 1.06998 1.03640 1.86162 1.24932 1.23545 1.86776 1.20271 0.90321 0.87714 0.92927 1.24873 1.04079 0.86949 1.06896 1.72418 1.01596 1.24740 1.05559 1.73033 0.99138 1.26340 1.21657 1.22227 0.88323 0.90151 0.88840 1.86537 1.12748 1.35564 1.83390 1.18945 0.89208 0.77851 0.95133 0.93923 1.21445 1.26785 1.14339 0.96220 0.92805 1.25677 0.93908 0.94768 1.01963 1.69979 1.26019 1.17949 1.35188 0.85711 0.77593 0.78907 0.80398 1.20733 1.19886 1.19397 1.19913 0.97088 0.95286 0.95198 1.21678 0.93104 1.00252 0.93643 1.21391 0.97325 0.99507 0.99304 1.21293 1.00113 0.93811 1.00040 1.21153 0.93786 0.99676 1.01316 1.21012 0.98434 0.97574 0.98498 1.18425 0.88100 0.86053 1.13197 1.86088 1.67300 1.39352 1.31083 1.23180 1.00197 0.98977 0.83584 0.89979 0.85007 0.90612 0.76227 0.92530 0.84564 0.85855 0.84044 0.83977 0.86750 0.86496 0.92048 0.94711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.06 9.84 113.37 1.12 1.18 16 2 O -0.30 -7.80 10.38 -81.06 -0.84 -8.65 16 3 C 0.15 4.72 6.76 22.83 0.15 4.87 16 4 C -0.06 -1.71 10.34 84.91 0.88 -0.83 16 5 N -0.20 -7.79 11.48 -56.99 -0.65 -8.45 16 6 N -0.34 -15.85 9.82 -170.00 -1.67 -17.52 16 7 C 0.29 13.94 7.54 84.93 0.64 14.58 16 8 O -0.28 -14.90 8.16 -78.82 -0.64 -15.55 16 9 C 0.24 12.89 2.36 29.10 0.07 12.96 16 10 H 0.04 2.28 6.92 -2.39 -0.02 2.27 16 11 C -0.55 -31.37 8.89 25.60 0.23 -31.14 16 12 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 13 C 0.04 2.31 5.24 84.66 0.44 2.76 16 14 N -0.86 -47.37 8.50 21.45 0.18 -47.19 16 15 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 19 C -0.07 -3.67 4.80 -19.87 -0.10 -3.77 16 20 C -0.07 -3.26 7.46 22.27 0.17 -3.10 16 21 C -0.16 -6.31 10.05 22.27 0.22 -6.08 16 22 C -0.13 -4.71 10.05 22.27 0.22 -4.48 16 23 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 24 C -0.14 -5.88 9.68 22.27 0.22 -5.67 16 25 C 0.00 -0.05 5.84 22.92 0.13 0.09 16 26 O -0.32 -13.29 10.16 -70.73 -0.72 -14.01 16 27 C 0.03 1.09 11.13 113.37 1.26 2.35 16 28 H 0.08 0.73 7.72 -2.39 -0.02 0.71 16 29 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.08 0.79 7.72 -2.39 -0.02 0.77 16 31 H 0.22 3.93 6.46 -2.91 -0.02 3.91 16 32 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.14 7.29 5.50 -2.91 -0.02 7.28 16 34 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.14 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -71.87 344.65 4.63 -67.23 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.07 Total: 18.75 kcal Atomic # 6 Polarization: -27.01 SS G_CDS: 5.88 Total: -21.13 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.14 Total: -73.15 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -2.20 Total: -38.20 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.87 4.63 -67.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234828019.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.276 kcal (2) G-P(sol) polarization free energy of solvation -71.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds