Wall clock time and date at job start Tue Mar 31 2020 11:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35988 * 117.00479 * 2 1 4 4 C 1.38209 * 119.96701 * 359.97438 * 3 2 1 5 5 C 1.39804 * 119.94164 * 180.02562 * 4 3 2 6 6 C 1.47617 * 120.06286 * 179.97438 * 5 4 3 7 7 N 1.32936 * 120.25529 * 225.77001 * 6 5 4 8 8 C 1.31976 * 120.07146 * 179.97438 * 7 6 5 9 9 C 1.39213 * 120.60718 * 359.97438 * 8 7 6 10 10 N 1.31604 * 120.51768 * 0.02562 * 9 8 7 11 11 C 1.33984 * 119.90284 * 359.97438 * 10 9 8 12 12 C 1.40724 * 120.28978 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99684 * 175.64530 * 12 11 10 14 14 C 1.40132 * 120.00110 * 355.64656 * 12 11 10 15 15 N 1.30701 * 120.00291 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99861 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47265 * 60.00026 * 16 14 12 18 18 H 1.48503 * 109.47180 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47480 * 299.99774 * 16 14 12 20 20 C 1.39799 * 119.87669 * 0.24425 * 5 4 3 21 21 C 1.38219 * 119.93784 * 359.50160 * 20 5 4 22 22 O 1.35995 * 119.96569 * 180.25273 * 21 20 5 23 23 C 1.42894 * 117.00147 * 0.25131 * 22 21 20 24 24 C 1.39292 * 119.97044 * 180.02562 * 3 2 1 25 25 O 1.35927 * 119.94095 * 359.97438 * 24 3 2 26 26 C 1.42899 * 117.00201 * 90.00207 * 25 24 3 27 27 H 1.08998 * 109.46837 * 300.00475 * 1 2 3 28 28 H 1.08999 * 109.46851 * 60.00014 * 1 2 3 29 29 H 1.08997 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.03332 * 0.04024 * 4 3 2 31 31 H 1.08000 * 119.69789 * 180.02562 * 8 7 6 32 32 H 1.07997 * 119.74285 * 180.27870 * 9 8 7 33 33 H 0.97002 * 120.00370 * 180.02562 * 15 14 12 34 34 H 1.07995 * 120.02876 * 179.75145 * 20 5 4 35 35 H 1.09005 * 109.47364 * 300.00179 * 23 22 21 36 36 H 1.08997 * 109.47529 * 60.00356 * 23 22 21 37 37 H 1.09003 * 109.47028 * 180.02562 * 23 22 21 38 38 H 1.09002 * 109.46850 * 299.99620 * 26 25 24 39 39 H 1.09002 * 109.47575 * 59.99362 * 26 25 24 40 40 H 1.08996 * 109.47429 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2932 2.3704 -0.0005 5 6 1.9285 3.6157 -0.0011 6 6 1.1266 4.8550 -0.0022 7 7 1.4355 5.8520 -0.8255 8 6 0.7157 6.9582 -0.8239 9 6 -0.3713 7.0952 0.0350 10 7 -0.6981 6.1232 0.8598 11 6 0.0185 4.9912 0.8753 12 6 -0.3240 3.9463 1.7535 13 1 0.2122 3.0096 1.7135 14 6 -1.3607 4.1212 2.6800 15 7 -2.0100 5.2545 2.7281 16 14 -1.8158 2.7339 3.8452 17 1 -0.6405 2.3859 4.6835 18 1 -2.9360 3.1681 4.7182 19 1 -2.2333 1.5446 3.0600 20 6 3.3248 3.6851 -0.0062 21 6 4.0732 2.5231 -0.0004 22 8 5.4315 2.5900 -0.0002 23 6 6.0169 3.8936 -0.0007 24 6 3.4375 1.2837 -0.0005 25 8 4.1760 0.1425 -0.0005 26 6 4.5280 -0.4025 -1.2738 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 0.2147 2.3139 -0.0003 31 1 0.9718 7.7642 -1.4956 32 1 -0.9534 8.0048 0.0215 33 1 -2.7274 5.3757 3.3697 34 1 3.8181 4.6458 -0.0107 35 1 5.6971 4.4352 -0.8910 36 1 5.6969 4.4359 0.8890 37 1 7.1032 3.8041 -0.0009 38 1 3.6215 -0.6403 -1.8304 39 1 5.1158 0.3268 -1.8313 40 1 5.1155 -1.3094 -1.1310 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239641350.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:07 Heat of formation + Delta-G solvation = -55.271560 kcal Electronic energy + Delta-G solvation = -26749.531820 eV Core-core repulsion = 22916.267818 eV Total energy + Delta-G solvation = -3833.264002 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81840 -40.76285 -39.95705 -38.69940 -37.34009 -36.06252 -34.02471 -32.85130 -30.73965 -30.39051 -28.79691 -28.11789 -27.98445 -27.15741 -24.79094 -23.94002 -22.75964 -22.47626 -19.71371 -19.54017 -18.39973 -18.28387 -17.78440 -17.27819 -17.12547 -16.82313 -16.60245 -16.43343 -15.96462 -15.86825 -15.66620 -15.44923 -14.91562 -14.76199 -14.22278 -13.92436 -13.55042 -13.41320 -13.33248 -13.09354 -12.95718 -12.73291 -12.55915 -12.42068 -12.38640 -12.09220 -11.92323 -11.77844 -11.54779 -11.49470 -10.99021 -10.90353 -9.90502 -9.43340 -9.14036 -8.99897 -8.47000 -6.69838 -0.09916 0.40348 0.69511 1.11844 1.35761 1.47340 1.50405 1.88246 2.12361 2.47810 2.68953 2.74201 2.95393 3.56451 3.72354 4.03286 4.09894 4.13618 4.23689 4.28773 4.36467 4.37838 4.38408 4.45989 4.51129 4.54308 4.57377 4.58381 4.70131 4.73192 4.79455 4.82787 5.04687 5.07668 5.19226 5.25628 5.37993 5.63621 5.75775 6.06002 6.07357 6.26885 6.40510 6.65522 6.73389 7.25743 7.83930 8.19886 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.011433 B = 0.005865 C = 0.004409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.403582 B = 4772.568448 C = 6349.673162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.313 6.313 3 C 0.145 3.855 4 C -0.221 4.221 5 C 0.080 3.920 6 C -0.056 4.056 7 N -0.420 5.420 8 C -0.118 4.118 9 C 0.082 3.918 10 N -0.484 5.484 11 C 0.192 3.808 12 C -0.422 4.422 13 H 0.108 0.892 14 C 0.026 3.974 15 N -0.733 5.733 16 Si 0.972 3.028 17 H -0.261 1.261 18 H -0.262 1.262 19 H -0.243 1.243 20 C -0.221 4.221 21 C 0.145 3.855 22 O -0.315 6.315 23 C 0.019 3.981 24 C 0.000 4.000 25 O -0.329 6.329 26 C 0.031 3.969 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.133 0.867 30 H 0.141 0.859 31 H 0.164 0.836 32 H 0.163 0.837 33 H 0.288 0.712 34 H 0.134 0.866 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.132 0.868 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 -7.188 -3.554 10.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.226 6.226 3 C 0.098 3.902 4 C -0.241 4.241 5 C 0.079 3.921 6 C -0.202 4.202 7 N -0.133 5.133 8 C -0.280 4.280 9 C -0.089 4.089 10 N -0.201 5.201 11 C 0.069 3.931 12 C -0.451 4.451 13 H 0.126 0.874 14 C -0.199 4.199 15 N -0.353 5.353 16 Si 0.791 3.209 17 H -0.186 1.186 18 H -0.186 1.186 19 H -0.167 1.167 20 C -0.241 4.241 21 C 0.099 3.901 22 O -0.229 6.229 23 C -0.075 4.075 24 C -0.045 4.045 25 O -0.245 6.245 26 C -0.063 4.063 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.158 0.842 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.099 0.901 34 H 0.151 0.849 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.171 -7.512 -3.275 10.259 hybrid contribution -0.744 0.744 0.187 1.069 sum 5.427 -6.769 -3.088 9.209 Atomic orbital electron populations 1.23396 0.76627 1.05784 1.02024 1.86061 1.22981 1.25212 1.88342 1.18786 0.90513 0.84967 0.95920 1.21241 1.00761 0.90483 1.11628 1.17960 0.91611 0.90757 0.91806 1.20285 1.00787 0.95381 1.03702 1.67763 1.27156 1.00031 1.18330 1.23143 0.99901 0.97890 1.07055 1.24118 0.95027 0.98450 0.91318 1.69537 1.28816 1.00828 1.20933 1.19580 0.88831 0.92424 0.92307 1.20301 1.12962 1.00024 1.11851 0.87390 1.27082 0.94822 0.99108 0.98919 1.70117 1.13448 1.24466 1.27302 0.85383 0.79098 0.78420 0.78036 1.18550 1.18602 1.16667 1.21117 0.93377 0.97292 1.12300 1.18772 0.83333 0.92093 0.95918 1.86065 1.15680 1.32739 1.88374 1.23360 1.00186 0.82046 1.01893 1.17063 0.86454 0.84803 1.16200 1.86053 1.70384 1.37631 1.30458 1.23139 0.99778 0.99069 0.84279 0.92747 0.92216 0.84874 0.84178 0.81838 0.82003 0.90055 0.84858 0.92216 0.92725 0.85006 0.93853 0.93832 0.86734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.31 -10.59 10.27 -79.36 -0.82 -11.41 16 3 C 0.14 5.55 6.69 22.52 0.15 5.70 16 4 C -0.22 -9.16 6.48 22.64 0.15 -9.02 16 5 C 0.08 3.62 5.31 -20.05 -0.11 3.51 16 6 C -0.06 -2.82 6.39 42.39 0.27 -2.55 16 7 N -0.42 -20.16 10.32 -182.36 -1.88 -22.04 16 8 C -0.12 -5.13 11.22 84.91 0.95 -4.17 16 9 C 0.08 3.72 11.22 84.96 0.95 4.68 16 10 N -0.48 -25.63 8.05 -187.83 -1.51 -27.14 16 11 C 0.19 10.22 6.53 40.35 0.26 10.48 16 12 C -0.42 -21.24 7.91 23.34 0.18 -21.05 16 13 H 0.11 5.15 4.77 -2.91 -0.01 5.14 16 14 C 0.03 1.22 5.50 85.32 0.47 1.69 16 15 N -0.73 -36.43 11.49 21.86 0.25 -36.17 16 16 Si 0.97 34.85 29.56 68.60 2.03 36.88 16 17 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 18 H -0.26 -8.86 7.11 99.48 0.71 -8.16 16 19 H -0.24 -8.04 7.11 99.48 0.71 -7.33 16 20 C -0.22 -8.95 8.67 22.64 0.20 -8.75 16 21 C 0.15 5.48 6.69 22.52 0.15 5.63 16 22 O -0.32 -10.33 10.27 -79.43 -0.82 -11.15 16 23 C 0.02 0.47 9.81 113.37 1.11 1.58 16 24 C 0.00 0.01 5.76 22.78 0.13 0.14 16 25 O -0.33 -11.66 9.96 -68.47 -0.68 -12.34 16 26 C 0.03 0.83 11.13 113.37 1.26 2.09 16 27 H 0.05 1.53 7.66 -2.39 -0.02 1.51 16 28 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 29 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.14 5.81 4.96 -2.91 -0.01 5.80 16 31 H 0.16 5.80 8.06 -2.91 -0.02 5.77 16 32 H 0.16 6.07 8.06 -2.91 -0.02 6.05 16 33 H 0.29 12.83 8.29 -92.71 -0.77 12.06 16 34 H 0.13 5.19 6.28 -2.91 -0.02 5.17 16 35 H 0.06 1.41 7.65 -2.38 -0.02 1.39 16 36 H 0.05 1.34 7.67 -2.39 -0.02 1.32 16 37 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -66.16 342.12 4.91 -61.25 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 1.09 Total: 30.63 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 7.25 Total: -8.51 kcal Atomic # 7 Polarization: -82.21 SS G_CDS: -3.14 Total: -85.36 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -2.31 Total: -34.90 kcal Atomic # 14 Polarization: 34.85 SS G_CDS: 2.03 Total: 36.88 kcal Total: -66.16 4.91 -61.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239641350.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.977 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds