Wall clock time and date at job start Tue Mar 31 2020 11:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36084 * 117.00164 * 2 1 4 4 C 1.38685 * 119.92843 * 359.97399 * 3 2 1 5 5 C 1.38370 * 120.40280 * 179.76880 * 4 3 2 6 6 C 1.38413 * 120.25247 * 0.51298 * 5 4 3 7 7 O 1.35847 * 120.07142 * 179.76867 * 6 5 4 8 8 C 1.42903 * 116.99658 * 359.72151 * 7 6 5 9 9 C 1.40266 * 119.85726 * 359.48864 * 6 5 4 10 10 C 1.47640 * 120.19327 * 180.27615 * 9 6 5 11 11 C 1.40584 * 120.80317 * 244.72109 * 10 9 6 12 12 N 1.31532 * 119.08087 * 179.71686 * 11 10 9 13 13 C 1.33696 * 120.83779 * 0.57328 * 12 11 10 14 14 C 1.40944 * 119.11519 * 179.68282 * 13 12 11 15 15 H 1.08008 * 119.99617 * 180.02562 * 14 13 12 16 16 C 1.40103 * 120.00464 * 0.02562 * 14 13 12 17 17 N 1.30691 * 119.99631 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00236 * 180.02562 * 16 14 13 19 19 H 1.48511 * 109.47271 * 89.99689 * 18 16 14 20 20 H 1.48498 * 109.47205 * 209.99589 * 18 16 14 21 21 H 1.48501 * 109.47364 * 329.99853 * 18 16 14 22 22 N 1.33700 * 121.76504 * 359.69725 * 13 12 11 23 23 C 1.31528 * 120.83744 * 0.02562 * 22 13 12 24 24 C 1.38826 * 119.93099 * 179.97438 * 3 2 1 25 25 O 1.35872 * 120.13272 * 359.97438 * 24 3 2 26 26 C 1.42890 * 117.00201 * 269.97877 * 25 24 3 27 27 H 1.08992 * 109.47199 * 300.00077 * 1 2 3 28 28 H 1.08998 * 109.46639 * 60.00483 * 1 2 3 29 29 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.80596 * 0.04867 * 4 3 2 31 31 H 1.07994 * 119.87567 * 180.25779 * 5 4 3 32 32 H 1.09002 * 109.47382 * 60.00034 * 8 7 6 33 33 H 1.09001 * 109.46938 * 300.00020 * 8 7 6 34 34 H 1.09004 * 109.46926 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.45975 * 359.97438 * 11 10 9 36 36 H 0.97001 * 119.99737 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.45585 * 179.97438 * 23 22 13 38 38 H 1.09004 * 109.47600 * 180.02562 * 26 25 24 39 39 H 1.09006 * 109.47103 * 299.99868 * 26 25 24 40 40 H 1.08997 * 109.47537 * 60.00022 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0468 1.2125 0.0000 4 6 1.2901 2.3747 -0.0005 5 6 1.9081 3.6127 0.0043 6 6 3.2893 3.7027 -0.0010 7 8 3.8921 4.9201 -0.0010 8 6 3.0389 6.0664 -0.0016 9 6 4.0652 2.5342 -0.0005 10 6 5.5390 2.6215 0.0001 11 6 6.2885 2.1491 -1.0914 12 7 7.5996 2.2488 -1.0577 13 6 8.2195 2.7802 0.0011 14 6 9.6265 2.8632 0.0017 15 1 10.1419 3.2896 0.8497 16 6 10.3565 2.3927 -1.0977 17 7 9.7329 1.8764 -2.1236 18 14 12.2213 2.5021 -1.0964 19 1 12.7894 1.2641 -0.5047 20 1 12.7092 2.6533 -2.4908 21 1 12.6478 3.6757 -0.2928 22 7 7.5404 3.2348 1.0593 23 6 6.2271 3.1733 1.0948 24 6 3.4333 1.2834 0.0005 25 8 4.1745 0.1447 0.0016 26 6 4.5283 -0.3979 1.2752 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.2118 2.3132 -0.0002 31 1 1.3105 4.5122 0.0080 32 1 2.4094 6.0513 0.8882 33 1 2.4102 6.0509 -0.8918 34 1 3.6464 6.9715 -0.0020 35 1 5.7945 1.7141 -1.9476 36 1 10.2383 1.5510 -2.8848 37 1 5.6848 3.5420 1.9529 38 1 5.1183 -1.3034 1.1333 39 1 5.1144 0.3336 1.8317 40 1 3.6227 -0.6375 1.8324 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239878083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:05 Heat of formation + Delta-G solvation = -50.572187 kcal Electronic energy + Delta-G solvation = -26404.373365 eV Core-core repulsion = 22571.313143 eV Total energy + Delta-G solvation = -3833.060222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.72716 -40.57530 -39.93285 -38.98810 -36.77040 -35.73910 -33.78844 -33.35375 -30.88869 -30.37089 -28.45813 -28.11477 -27.69238 -27.17404 -24.60517 -24.22096 -22.75167 -22.27399 -19.82036 -19.44299 -18.56927 -18.17647 -17.82039 -17.30507 -17.04549 -16.77595 -16.35734 -16.21684 -15.95479 -15.88199 -15.58856 -15.37104 -14.81283 -14.48710 -14.08612 -13.92671 -13.63697 -13.60125 -13.30935 -13.07536 -12.90492 -12.71433 -12.67625 -12.43286 -12.36559 -11.97545 -11.90039 -11.36918 -11.22966 -11.17017 -11.09271 -10.81976 -10.12939 -9.53664 -9.15627 -8.62490 -8.40959 -6.72741 0.02089 0.39861 0.77442 1.08785 1.40110 1.51702 1.57232 2.20256 2.29642 2.39563 2.59779 2.74823 3.08907 3.78771 3.87561 3.96359 4.00971 4.04019 4.17143 4.23062 4.38800 4.40649 4.42068 4.45120 4.45909 4.47512 4.48719 4.66307 4.73568 4.78356 4.79284 4.90688 5.01739 5.16476 5.20288 5.24260 5.41217 5.56060 5.78168 6.13155 6.26702 6.52628 6.56276 6.60643 6.73919 7.17032 8.21111 8.35814 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017928 B = 0.003955 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.435358 B = 7078.523407 C = 8098.892319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.071 3.929 4 C -0.156 4.156 5 C -0.163 4.163 6 C 0.097 3.903 7 O -0.335 6.335 8 C 0.018 3.982 9 C -0.033 4.033 10 C -0.281 4.281 11 C 0.173 3.827 12 N -0.537 5.537 13 C 0.360 3.640 14 C -0.430 4.430 15 H 0.091 0.909 16 C 0.022 3.978 17 N -0.742 5.742 18 Si 1.002 2.998 19 H -0.259 1.259 20 H -0.261 1.261 21 H -0.255 1.255 22 N -0.618 5.618 23 C 0.183 3.817 24 C 0.078 3.922 25 O -0.339 6.339 26 C 0.045 3.955 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.285 0.715 37 H 0.147 0.853 38 H 0.098 0.902 39 H 0.025 0.975 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.743 1.097 3.229 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.246 6.246 3 C 0.025 3.975 4 C -0.175 4.175 5 C -0.181 4.181 6 C 0.052 3.948 7 O -0.249 6.249 8 C -0.076 4.076 9 C -0.036 4.036 10 C -0.291 4.291 11 C -0.001 4.001 12 N -0.254 5.254 13 C 0.124 3.876 14 C -0.464 4.464 15 H 0.109 0.891 16 C -0.202 4.202 17 N -0.364 5.364 18 Si 0.821 3.179 19 H -0.183 1.183 20 H -0.186 1.186 21 H -0.178 1.178 22 N -0.337 5.337 23 C 0.011 3.989 24 C 0.034 3.966 25 O -0.256 6.256 26 C -0.049 4.049 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.189 0.811 31 H 0.185 0.815 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.096 0.904 37 H 0.165 0.835 38 H 0.116 0.884 39 H 0.044 0.956 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.248 0.819 2.848 17.500 hybrid contribution -0.586 0.143 0.054 0.606 sum -17.834 0.963 2.902 18.094 Atomic orbital electron populations 1.23371 0.76513 1.05452 1.02449 1.86150 1.23336 1.25884 1.89199 1.19180 0.90434 0.86146 1.01721 1.21233 1.01260 0.89917 1.05076 1.21264 0.91704 0.99811 1.05320 1.19027 0.91280 0.84691 0.99843 1.86167 1.37124 1.12815 1.88803 1.23336 0.95855 0.85840 1.02592 1.18073 0.91649 0.90052 1.03841 1.19436 0.92357 1.17068 1.00193 1.23177 0.90587 0.90897 0.95419 1.69299 1.08380 1.20589 1.27163 1.20306 0.95395 0.88076 0.83797 1.19659 0.88983 1.34166 1.03625 0.89050 1.27149 1.06920 0.92597 0.93537 1.70230 1.39767 1.22194 1.04179 0.84920 0.73724 0.80155 0.79121 1.18300 1.18558 1.17840 1.68631 1.08902 1.26545 1.29630 1.22901 0.89998 0.90440 0.95563 1.18001 0.87029 0.85410 1.06193 1.85978 1.71253 1.38221 1.30112 1.22920 0.99787 0.98144 0.84032 0.91216 0.91514 0.86730 0.81120 0.81488 0.90750 0.91308 0.87770 0.85265 0.90373 0.83540 0.88366 0.95577 0.92072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.91 10.27 -80.37 -0.83 -9.74 16 3 C 0.07 2.11 6.69 22.52 0.15 2.26 16 4 C -0.16 -3.52 9.03 22.41 0.20 -3.32 16 5 C -0.16 -3.87 9.03 22.34 0.20 -3.67 16 6 C 0.10 3.23 6.68 22.80 0.15 3.38 16 7 O -0.33 -11.30 9.74 -91.83 -0.89 -12.20 16 8 C 0.02 0.37 9.81 113.37 1.11 1.48 16 9 C -0.03 -1.34 5.40 -19.84 -0.11 -1.44 16 10 C -0.28 -13.52 4.61 -19.65 -0.09 -13.61 16 11 C 0.17 9.32 10.80 85.31 0.92 10.24 16 12 N -0.54 -32.32 7.82 -193.12 -1.51 -33.83 16 13 C 0.36 21.83 7.35 134.84 0.99 22.82 16 14 C -0.43 -24.95 9.34 23.39 0.22 -24.73 16 15 H 0.09 5.09 7.85 -2.91 -0.02 5.07 16 16 C 0.02 1.15 5.50 85.32 0.47 1.62 16 17 N -0.74 -41.00 11.40 21.85 0.25 -40.75 16 18 Si 1.00 38.83 29.56 68.60 2.03 40.85 16 19 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 22 N -0.62 -35.13 10.33 -193.13 -2.00 -37.13 16 23 C 0.18 9.14 10.82 85.31 0.92 10.06 16 24 C 0.08 2.94 5.72 22.87 0.13 3.07 16 25 O -0.34 -13.71 9.43 -77.98 -0.74 -14.45 16 26 C 0.05 1.55 11.13 113.37 1.26 2.81 16 27 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 28 H 0.07 0.79 7.65 -2.39 -0.02 0.78 16 29 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.17 2.36 6.26 -2.91 -0.02 2.35 16 31 H 0.17 2.62 6.28 -2.91 -0.02 2.60 16 32 H 0.07 1.15 7.65 -2.39 -0.02 1.13 16 33 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 34 H 0.10 1.92 8.14 -2.38 -0.02 1.90 16 35 H 0.13 6.64 8.06 -2.91 -0.02 6.61 16 36 H 0.29 14.02 8.29 -92.71 -0.77 13.25 16 37 H 0.15 6.40 8.06 -2.91 -0.02 6.38 16 38 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -77.59 347.71 5.04 -72.55 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 1.08 Total: 22.36 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: 7.65 Total: 12.32 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.26 Total: -111.71 kcal Atomic # 8 Polarization: -33.93 SS G_CDS: -2.46 Total: -36.38 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.85 kcal Total: -77.59 5.04 -72.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239878083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.979 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds