Wall clock time and date at job start Tue Mar 31 2020 11:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35776 * 117.00082 * 2 1 4 4 C 1.38637 * 119.56016 * 179.97438 * 3 2 1 5 5 C 1.39600 * 119.02124 * 180.02562 * 4 3 2 6 6 C 1.48205 * 120.90513 * 179.97438 * 5 4 3 7 7 C 1.40086 * 119.52041 * 353.46980 * 6 5 4 8 8 C 1.38324 * 119.57336 * 179.97438 * 7 6 5 9 9 C 1.39108 * 118.63926 * 0.02562 * 8 7 6 10 10 O 1.35523 * 120.48889 * 179.97438 * 9 8 7 11 11 C 1.42902 * 116.99313 * 359.97438 * 10 9 8 12 12 C 1.41419 * 119.03025 * 359.97438 * 9 8 7 13 13 C 1.41004 * 119.82893 * 179.97438 * 12 9 8 14 14 H 1.07993 * 120.00019 * 321.76227 * 13 12 9 15 15 C 1.40032 * 119.99429 * 141.76849 * 13 12 9 16 16 N 1.30773 * 119.99629 * 163.21090 * 15 13 12 17 17 Si 1.86799 * 120.00406 * 343.20886 * 15 13 12 18 18 H 1.48500 * 109.47117 * 95.69025 * 17 15 13 19 19 H 1.48495 * 109.47345 * 215.69656 * 17 15 13 20 20 H 1.48506 * 109.46676 * 335.69583 * 17 15 13 21 21 N 1.32197 * 119.52177 * 173.43022 * 6 5 4 22 22 C 1.40367 * 118.18708 * 0.25240 * 5 4 3 23 23 O 1.35907 * 120.48992 * 179.75170 * 22 5 4 24 24 C 1.42900 * 116.99989 * 186.11957 * 23 22 5 25 25 C 1.38405 * 119.01983 * 359.52138 * 22 5 4 26 26 N 1.31977 * 120.87228 * 0.49489 * 25 22 5 27 27 H 1.09000 * 109.46975 * 299.99344 * 1 2 3 28 28 H 1.08997 * 109.47203 * 60.00247 * 1 2 3 29 29 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.48710 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.21075 * 0.25953 * 7 6 5 32 32 H 1.08002 * 120.67857 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.47241 * 60.00051 * 11 10 9 34 34 H 1.09002 * 109.46704 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47426 * 299.99782 * 11 10 9 36 36 H 0.97000 * 119.99789 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47335 * 300.70036 * 24 23 22 38 38 H 1.08999 * 109.47125 * 60.70112 * 24 23 22 39 39 H 1.08995 * 109.46945 * 180.70272 * 24 23 22 40 40 H 1.07999 * 119.56408 * 180.20704 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4304 1.2717 0.0005 5 6 4.0525 2.5214 0.0011 6 6 5.5301 2.6362 0.0022 7 6 6.3120 1.4823 0.1414 8 6 7.6911 1.5881 0.1421 9 6 8.2632 2.8485 0.0039 10 8 9.6104 2.9956 0.0001 11 6 10.3928 1.8084 0.1436 12 6 7.4183 3.9744 -0.1327 13 6 7.9802 5.2600 -0.2734 14 1 8.8633 5.5276 0.2876 15 6 7.3929 6.1896 -1.1405 16 7 7.6918 7.4586 -1.0383 17 14 6.1825 5.6171 -2.4430 18 1 4.7965 5.7713 -1.9328 19 1 6.3522 6.4356 -3.6704 20 1 6.4368 4.1890 -2.7613 21 7 6.0911 3.8261 -0.1289 22 6 3.2403 3.6663 0.0065 23 8 3.7966 4.9063 0.0123 24 6 2.9070 6.0157 0.1533 25 6 1.8647 3.5137 0.0010 26 7 1.3165 2.3132 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0193 0.3664 0.0014 31 1 5.8409 0.5156 0.2429 32 1 8.3111 0.7101 0.2478 33 1 10.1704 1.1253 -0.6762 34 1 11.4516 2.0666 0.1239 35 1 10.1533 1.3278 1.0922 36 1 7.2853 8.1025 -1.6391 37 1 2.1874 6.0108 -0.6654 38 1 2.3775 5.9384 1.1029 39 1 3.4775 6.9441 0.1299 40 1 1.2315 4.3886 0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242426959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:51 Heat of formation + Delta-G solvation = -30.938774 kcal Electronic energy + Delta-G solvation = -26564.784663 eV Core-core repulsion = 22732.575810 eV Total energy + Delta-G solvation = -3832.208853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.62465 -39.24948 -38.62486 -37.11922 -36.61294 -33.82112 -32.59363 -31.08876 -30.03788 -29.17200 -27.28263 -26.94426 -26.78375 -25.60435 -23.50654 -22.54753 -21.36446 -20.67833 -18.13400 -17.56981 -17.50898 -17.19091 -16.90494 -15.94419 -15.55390 -15.37328 -15.09634 -14.90378 -14.58664 -14.47286 -13.97568 -13.40974 -13.37953 -13.26030 -13.01891 -12.72395 -12.56381 -12.39732 -11.86629 -11.81722 -11.52984 -11.42425 -11.39155 -10.89309 -10.86462 -10.75523 -10.55086 -10.34593 -9.97152 -9.44661 -9.39028 -9.08519 -8.49044 -8.10278 -7.76197 -7.08234 -6.80946 -4.48881 1.04994 1.50428 2.41380 2.62781 3.21255 3.33265 3.44680 3.49342 3.76085 3.99614 4.15907 4.30120 4.47714 4.60396 4.79927 5.05823 5.20087 5.27562 5.32785 5.39611 5.42856 5.46839 5.53389 5.59921 5.63192 5.67207 5.72985 5.84490 5.88110 5.92675 5.95869 6.09042 6.28019 6.40933 6.60918 7.07667 7.10925 7.22621 7.35172 7.48932 7.78435 8.01849 8.02995 8.32316 8.65892 8.75288 9.47850 10.17565 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.005520 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.049417 B = 5071.431052 C = 6744.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.312 6.312 3 C 0.274 3.726 4 C -0.142 4.142 5 C 0.024 3.976 6 C 0.145 3.855 7 C -0.233 4.233 8 C -0.155 4.155 9 C 0.014 3.986 10 O -0.298 6.298 11 C 0.030 3.970 12 C 0.246 3.754 13 C -0.419 4.419 14 H 0.101 0.899 15 C 0.107 3.893 16 N -0.807 5.807 17 Si 0.927 3.073 18 H -0.242 1.242 19 H -0.306 1.306 20 H -0.269 1.269 21 N -0.483 5.483 22 C 0.074 3.926 23 O -0.250 6.250 24 C 0.019 3.981 25 C 0.038 3.962 26 N -0.513 5.513 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.284 0.716 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.890 -8.556 1.142 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.220 6.220 3 C 0.095 3.905 4 C -0.164 4.164 5 C 0.015 3.985 6 C 0.007 3.993 7 C -0.256 4.256 8 C -0.179 4.179 9 C -0.035 4.035 10 O -0.210 6.210 11 C -0.067 4.067 12 C 0.117 3.883 13 C -0.451 4.451 14 H 0.119 0.881 15 C -0.114 4.114 16 N -0.432 5.432 17 Si 0.754 3.246 18 H -0.166 1.166 19 H -0.235 1.235 20 H -0.194 1.194 21 N -0.200 5.200 22 C 0.024 3.976 23 O -0.159 6.159 24 C -0.076 4.076 25 C -0.117 4.117 26 N -0.237 5.237 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.109 0.891 30 H 0.166 0.834 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.062 0.938 34 H 0.106 0.894 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -9.819 -7.631 0.991 12.475 hybrid contribution 0.418 -1.002 -0.396 1.156 sum -9.401 -8.633 0.595 12.777 Atomic orbital electron populations 1.22740 0.78020 1.02297 1.02102 1.86210 1.22186 1.24492 1.89106 1.19367 0.88918 0.84440 0.97798 1.20900 0.91581 0.98034 1.05847 1.18333 0.92400 0.89571 0.98193 1.19052 0.89854 0.90263 1.00100 1.21071 0.93083 0.97627 1.13830 1.21039 0.95412 0.95653 1.05838 1.20535 0.82847 0.94295 1.05862 1.86044 1.15033 1.31611 1.88278 1.22867 0.95526 0.88307 0.99974 1.18163 0.85577 0.91980 0.92605 1.19038 1.11015 0.92977 1.22087 0.88130 1.25945 0.94095 0.93538 0.97849 1.69690 1.37409 1.02399 1.33740 0.85909 0.82589 0.78878 0.77207 1.16636 1.23533 1.19351 1.68264 1.10461 1.22259 1.19057 1.20048 0.91716 0.87158 0.98657 1.86744 1.32761 1.10333 1.86100 1.23079 0.94974 0.89685 0.99885 1.22347 0.91373 0.94452 1.03568 1.66967 1.40630 0.98281 1.17847 0.92696 0.92697 0.89132 0.83371 0.87123 0.86768 0.93803 0.89356 0.93847 0.90631 0.93432 0.93187 0.88056 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.57 10.48 -19.04 -0.20 -4.77 16 3 C 0.27 4.53 7.48 -17.23 -0.13 4.40 16 4 C -0.14 -2.45 9.40 -38.93 -0.37 -2.81 16 5 C 0.02 0.48 5.91 -104.49 -0.62 -0.14 16 6 C 0.15 3.27 6.73 -82.92 -0.56 2.71 16 7 C -0.23 -4.72 9.47 -38.86 -0.37 -5.09 16 8 C -0.16 -3.17 9.11 -39.23 -0.36 -3.52 16 9 C 0.01 0.33 6.74 -38.05 -0.26 0.07 16 10 O -0.30 -6.50 9.92 -18.26 -0.18 -6.69 16 11 C 0.03 0.45 9.83 101.05 0.99 1.45 16 12 C 0.25 6.42 5.49 -84.86 -0.47 5.95 16 13 C -0.42 -11.61 9.15 -37.86 -0.35 -11.96 16 14 H 0.10 2.92 8.03 -52.49 -0.42 2.50 16 15 C 0.11 2.87 5.48 -17.33 -0.09 2.77 16 16 N -0.81 -21.68 13.92 55.55 0.77 -20.91 16 17 Si 0.93 22.58 25.94 -169.99 -4.41 18.17 16 18 H -0.24 -5.63 5.49 56.52 0.31 -5.32 16 19 H -0.31 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 21 N -0.48 -12.17 5.37 -7.57 -0.04 -12.21 16 22 C 0.07 1.41 6.70 -38.72 -0.26 1.15 16 23 O -0.25 -5.05 6.82 -19.45 -0.13 -5.19 16 24 C 0.02 0.29 9.70 101.05 0.98 1.27 16 25 C 0.04 0.61 10.24 -17.43 -0.18 0.43 16 26 N -0.51 -8.42 9.18 -13.29 -0.12 -8.54 16 27 H 0.05 0.59 8.10 -51.93 -0.42 0.17 16 28 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.15 2.26 6.34 -52.49 -0.33 1.93 16 31 H 0.11 1.88 6.30 -52.48 -0.33 1.55 16 32 H 0.11 1.93 6.43 -52.49 -0.34 1.59 16 33 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 34 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.04 0.61 7.69 -51.93 -0.40 0.21 16 36 H 0.28 6.92 8.29 -40.82 -0.34 6.58 16 37 H 0.05 0.60 7.36 -51.93 -0.38 0.22 16 38 H 0.05 0.62 7.98 -51.93 -0.41 0.21 16 39 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 40 H 0.16 2.08 6.31 -52.49 -0.33 1.75 16 LS Contribution 336.21 15.07 5.07 5.07 Total: -1.00 -31.51 336.21 -4.90 -36.42 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -4.68 Total: 0.41 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.98 Total: -1.78 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.61 Total: -41.66 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.51 Total: -16.64 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.41 Total: 18.17 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.51 -4.90 -36.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242426959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.477 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds