Wall clock time and date at job start Tue Mar 31 2020 11:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35776 * 117.00082 * 2 1 4 4 C 1.38637 * 119.56016 * 179.97438 * 3 2 1 5 5 C 1.39600 * 119.02124 * 180.02562 * 4 3 2 6 6 C 1.48205 * 120.90513 * 179.97438 * 5 4 3 7 7 C 1.40086 * 119.52041 * 353.46980 * 6 5 4 8 8 C 1.38324 * 119.57336 * 179.97438 * 7 6 5 9 9 C 1.39108 * 118.63926 * 0.02562 * 8 7 6 10 10 O 1.35523 * 120.48889 * 179.97438 * 9 8 7 11 11 C 1.42902 * 116.99313 * 359.97438 * 10 9 8 12 12 C 1.41419 * 119.03025 * 359.97438 * 9 8 7 13 13 C 1.41004 * 119.82893 * 179.97438 * 12 9 8 14 14 H 1.07993 * 120.00019 * 321.76227 * 13 12 9 15 15 C 1.40032 * 119.99429 * 141.76849 * 13 12 9 16 16 N 1.30773 * 119.99629 * 163.21090 * 15 13 12 17 17 Si 1.86799 * 120.00406 * 343.20886 * 15 13 12 18 18 H 1.48500 * 109.47117 * 95.69025 * 17 15 13 19 19 H 1.48495 * 109.47345 * 215.69656 * 17 15 13 20 20 H 1.48506 * 109.46676 * 335.69583 * 17 15 13 21 21 N 1.32197 * 119.52177 * 173.43022 * 6 5 4 22 22 C 1.40367 * 118.18708 * 0.25240 * 5 4 3 23 23 O 1.35907 * 120.48992 * 179.75170 * 22 5 4 24 24 C 1.42900 * 116.99989 * 186.11957 * 23 22 5 25 25 C 1.38405 * 119.01983 * 359.52138 * 22 5 4 26 26 N 1.31977 * 120.87228 * 0.49489 * 25 22 5 27 27 H 1.09000 * 109.46975 * 299.99344 * 1 2 3 28 28 H 1.08997 * 109.47203 * 60.00247 * 1 2 3 29 29 H 1.09004 * 109.46787 * 180.02562 * 1 2 3 30 30 H 1.07997 * 120.48710 * 359.97438 * 4 3 2 31 31 H 1.08005 * 120.21075 * 0.25953 * 7 6 5 32 32 H 1.08002 * 120.67857 * 180.02562 * 8 7 6 33 33 H 1.09003 * 109.47241 * 60.00051 * 11 10 9 34 34 H 1.09002 * 109.46704 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47426 * 299.99782 * 11 10 9 36 36 H 0.97000 * 119.99789 * 179.97438 * 16 15 13 37 37 H 1.09000 * 109.47335 * 300.70036 * 24 23 22 38 38 H 1.08999 * 109.47125 * 60.70112 * 24 23 22 39 39 H 1.08995 * 109.46945 * 180.70272 * 24 23 22 40 40 H 1.07999 * 119.56408 * 180.20704 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 3.4304 1.2717 0.0005 5 6 4.0525 2.5214 0.0011 6 6 5.5301 2.6362 0.0022 7 6 6.3120 1.4823 0.1414 8 6 7.6911 1.5881 0.1421 9 6 8.2632 2.8485 0.0039 10 8 9.6104 2.9956 0.0001 11 6 10.3928 1.8084 0.1436 12 6 7.4183 3.9744 -0.1327 13 6 7.9802 5.2600 -0.2734 14 1 8.8633 5.5276 0.2876 15 6 7.3929 6.1896 -1.1405 16 7 7.6918 7.4586 -1.0383 17 14 6.1825 5.6171 -2.4430 18 1 4.7965 5.7713 -1.9328 19 1 6.3522 6.4356 -3.6704 20 1 6.4368 4.1890 -2.7613 21 7 6.0911 3.8261 -0.1289 22 6 3.2403 3.6663 0.0065 23 8 3.7966 4.9063 0.0123 24 6 2.9070 6.0157 0.1533 25 6 1.8647 3.5137 0.0010 26 7 1.3165 2.3132 0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 4.0193 0.3664 0.0014 31 1 5.8409 0.5156 0.2429 32 1 8.3111 0.7101 0.2478 33 1 10.1704 1.1253 -0.6762 34 1 11.4516 2.0666 0.1239 35 1 10.1533 1.3278 1.0922 36 1 7.2853 8.1025 -1.6391 37 1 2.1874 6.0108 -0.6654 38 1 2.3775 5.9384 1.1029 39 1 3.4775 6.9441 0.1299 40 1 1.2315 4.3886 0.0017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242426959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:51 Heat of formation + Delta-G solvation = -54.000959 kcal Electronic energy + Delta-G solvation = -26565.784715 eV Core-core repulsion = 22732.575810 eV Total energy + Delta-G solvation = -3833.208904 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94423 -40.89185 -39.87502 -38.71101 -37.89701 -35.64117 -34.14723 -32.82792 -31.43858 -30.65122 -28.43489 -28.25027 -28.02263 -27.25077 -24.90795 -23.98065 -23.00456 -22.21058 -19.71643 -19.13551 -18.87754 -18.64163 -18.37567 -17.18880 -17.13143 -16.93598 -16.45105 -16.41514 -15.90256 -15.80079 -15.44659 -14.90571 -14.81391 -14.63712 -14.50682 -14.32105 -14.07747 -13.78057 -13.55631 -13.11968 -12.78574 -12.73280 -12.67722 -12.54683 -12.48436 -12.24794 -12.05783 -11.81388 -11.70189 -11.19870 -10.72319 -10.67219 -10.24699 -9.86445 -9.15213 -8.78233 -8.68286 -6.47582 -0.38023 0.19103 0.64772 0.97518 1.37298 1.49990 1.53545 2.10044 2.33884 2.50042 2.54537 2.69524 2.81700 3.25770 3.44245 3.53737 3.75413 3.89905 4.15467 4.15991 4.28823 4.39620 4.41366 4.45930 4.47289 4.50127 4.50241 4.57560 4.66088 4.74583 4.75416 4.77181 4.82124 4.90227 5.14179 5.32942 5.40273 5.47874 5.81201 6.19779 6.20966 6.30109 6.51486 6.74224 6.78454 6.93599 7.66851 8.28598 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013304 B = 0.005520 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.049417 B = 5071.431052 C = 6744.337520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.316 6.316 3 C 0.273 3.727 4 C -0.137 4.137 5 C -0.006 4.006 6 C 0.119 3.881 7 C -0.209 4.209 8 C -0.148 4.148 9 C 0.001 3.999 10 O -0.329 6.329 11 C 0.019 3.981 12 C 0.221 3.779 13 C -0.461 4.461 14 H 0.064 0.936 15 C 0.080 3.920 16 N -0.849 5.849 17 Si 0.973 3.027 18 H -0.228 1.228 19 H -0.297 1.297 20 H -0.295 1.295 21 N -0.494 5.494 22 C 0.056 3.944 23 O -0.290 6.290 24 C 0.010 3.990 25 C 0.051 3.949 26 N -0.510 5.510 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.124 0.876 30 H 0.168 0.832 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.060 0.940 34 H 0.112 0.888 35 H 0.061 0.939 36 H 0.290 0.710 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.212 -11.986 1.192 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.094 3.906 4 C -0.158 4.158 5 C -0.015 4.015 6 C -0.019 4.019 7 C -0.231 4.231 8 C -0.172 4.172 9 C -0.049 4.049 10 O -0.242 6.242 11 C -0.076 4.076 12 C 0.090 3.910 13 C -0.495 4.495 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.477 5.477 17 Si 0.800 3.200 18 H -0.152 1.152 19 H -0.225 1.225 20 H -0.222 1.222 21 N -0.211 5.211 22 C 0.006 3.994 23 O -0.200 6.200 24 C -0.085 4.085 25 C -0.104 4.104 26 N -0.235 5.235 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.185 0.815 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.079 0.921 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.112 0.888 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -12.163 -11.085 1.050 16.490 hybrid contribution 1.027 -0.316 -0.290 1.114 sum -11.135 -11.402 0.760 15.955 Atomic orbital electron populations 1.23045 0.75937 1.04608 1.02134 1.86214 1.24197 1.23321 1.88675 1.19502 0.88974 0.85107 0.97011 1.21006 0.92192 0.97588 1.04992 1.18423 0.91227 0.91223 1.00640 1.19634 0.91758 0.90177 1.00292 1.21667 0.93129 0.98807 1.09495 1.21518 0.95993 0.95836 1.03829 1.20621 0.83738 0.94724 1.05778 1.86007 1.14633 1.35244 1.88283 1.23261 0.95968 0.86870 1.01488 1.18249 0.86648 0.92417 0.93688 1.18853 1.11213 0.95042 1.24381 0.91780 1.26357 0.95094 0.93511 0.98626 1.69706 1.39643 1.02937 1.35392 0.85250 0.82073 0.76665 0.75998 1.15192 1.22549 1.22196 1.68152 1.10228 1.24262 1.18416 1.20266 0.92776 0.86737 0.99595 1.86668 1.35205 1.11602 1.86536 1.23320 0.94970 0.88032 1.02149 1.22746 0.90587 0.95378 1.01717 1.67083 1.40521 0.98370 1.17504 0.92574 0.92698 0.85807 0.81471 0.82919 0.82415 0.92114 0.86964 0.92042 0.89957 0.91045 0.90816 0.88770 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.85 16 2 O -0.32 -8.09 10.48 -91.04 -0.95 -9.05 16 3 C 0.27 8.15 7.48 84.73 0.63 8.79 16 4 C -0.14 -4.29 9.40 22.69 0.21 -4.07 16 5 C -0.01 -0.24 5.91 -19.78 -0.12 -0.36 16 6 C 0.12 5.23 6.73 42.19 0.28 5.51 16 7 C -0.21 -7.83 9.47 22.74 0.22 -7.61 16 8 C -0.15 -5.60 9.11 22.50 0.21 -5.40 16 9 C 0.00 0.03 6.74 23.26 0.16 0.18 16 10 O -0.33 -14.49 9.92 -88.26 -0.88 -15.36 16 11 C 0.02 0.54 9.83 113.37 1.11 1.66 16 12 C 0.22 11.95 5.49 40.34 0.22 12.17 16 13 C -0.46 -27.40 9.15 23.38 0.21 -27.18 16 14 H 0.06 4.10 8.03 -2.91 -0.02 4.08 16 15 C 0.08 4.57 5.48 85.29 0.47 5.04 16 16 N -0.85 -48.43 13.92 21.84 0.30 -48.12 16 17 Si 0.97 48.47 25.94 68.60 1.78 50.24 16 18 H -0.23 -10.67 5.49 99.48 0.55 -10.13 16 19 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 20 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 21 N -0.49 -25.30 5.37 -177.87 -0.96 -26.25 16 22 C 0.06 2.05 6.70 22.83 0.15 2.21 16 23 O -0.29 -11.63 6.82 -92.50 -0.63 -12.26 16 24 C 0.01 0.29 9.70 113.37 1.10 1.39 16 25 C 0.05 1.53 10.24 84.71 0.87 2.40 16 26 N -0.51 -15.15 9.18 -308.76 -2.83 -17.99 16 27 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 28 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 29 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.17 4.39 6.34 -2.91 -0.02 4.38 16 31 H 0.15 4.40 6.30 -2.91 -0.02 4.38 16 32 H 0.16 4.55 6.43 -2.91 -0.02 4.53 16 33 H 0.06 1.53 7.69 -2.39 -0.02 1.51 16 34 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.06 1.53 7.69 -2.39 -0.02 1.51 16 36 H 0.29 14.95 8.29 -92.71 -0.77 14.18 16 37 H 0.07 1.65 7.36 -2.39 -0.02 1.64 16 38 H 0.07 1.71 7.98 -2.39 -0.02 1.69 16 39 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 40 H 0.19 4.29 6.31 -2.91 -0.02 4.27 16 Total: -1.00 -73.49 336.21 3.66 -69.83 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.92 Total: 12.40 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: 6.91 Total: -3.44 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -3.49 Total: -92.36 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -2.46 Total: -36.67 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.78 Total: 50.24 kcal Total: -73.49 3.66 -69.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242426959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.825 kcal (2) G-P(sol) polarization free energy of solvation -73.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds