Wall clock time and date at job start Tue Mar 31 2020 11:55:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.35523 * 117.00313 * 2 1
4 4 C 1.39109 * 120.48343 * 359.97438 * 3 2 1
5 5 C 1.38324 * 118.63892 * 179.97438 * 4 3 2
6 6 C 1.40091 * 119.57109 * 0.02562 * 5 4 3
7 7 C 1.48199 * 119.52129 * 179.97438 * 6 5 4
8 8 C 1.40025 * 120.90712 * 47.08154 * 7 6 5
9 9 C 1.37743 * 119.19127 * 179.97438 * 8 7 6
10 10 N 1.32078 * 121.09020 * 0.02562 * 9 8 7
11 11 C 1.32122 * 122.01082 * 359.97438 * 10 9 8
12 12 O 1.35769 * 119.66664 * 179.97438 * 11 10 9
13 13 C 1.42904 * 116.99589 * 359.97438 * 12 11 10
14 14 C 1.39316 * 120.67292 * 359.73248 * 11 10 9
15 15 O 1.35907 * 120.57504 * 180.26985 * 14 11 10
16 16 C 1.42902 * 116.99807 * 274.83389 * 15 14 11
17 17 N 1.32203 * 120.95914 * 0.02562 * 6 5 4
18 18 C 1.33559 * 121.45967 * 359.95771 * 17 6 5
19 19 C 1.41003 * 119.82873 * 180.02562 * 18 17 6
20 20 H 1.08001 * 120.00348 * 174.13417 * 19 18 17
21 21 C 1.40032 * 120.00145 * 354.13080 * 19 18 17
22 22 N 1.30774 * 120.00020 * 6.62900 * 21 19 18
23 23 Si 1.86802 * 120.00107 * 186.63106 * 21 19 18
24 24 H 1.48505 * 109.46967 * 359.97438 * 23 21 19
25 25 H 1.48497 * 109.47426 * 119.99965 * 23 21 19
26 26 H 1.48503 * 109.46786 * 240.00258 * 23 21 19
27 27 H 1.08997 * 109.47600 * 180.02562 * 1 2 3
28 28 H 1.08994 * 109.47190 * 300.00576 * 1 2 3
29 29 H 1.09009 * 109.46648 * 59.99913 * 1 2 3
30 30 H 1.07993 * 120.68343 * 359.95944 * 4 3 2
31 31 H 1.08000 * 120.21677 * 179.72455 * 5 4 3
32 32 H 1.07994 * 120.39960 * 0.02562 * 8 7 6
33 33 H 1.08003 * 119.45426 * 180.02562 * 9 8 7
34 34 H 1.09001 * 109.47185 * 180.02562 * 13 12 11
35 35 H 1.08999 * 109.47212 * 300.00081 * 13 12 11
36 36 H 1.08994 * 109.47260 * 59.99875 * 13 12 11
37 37 H 1.09004 * 109.46516 * 64.95860 * 16 15 14
38 38 H 1.09000 * 109.47040 * 184.95473 * 16 15 14
39 39 H 1.08999 * 109.46940 * 304.96207 * 16 15 14
40 40 H 0.97000 * 119.99820 * 184.99921 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0443 1.2075 0.0000
4 6 1.2966 2.3805 -0.0005
5 6 1.9640 3.5921 0.0000
6 6 3.3648 3.6098 0.0006
7 6 4.0787 4.9085 0.0006
8 6 3.7079 5.9331 0.8801
9 6 4.3961 7.1259 0.8503
10 7 5.3953 7.3159 0.0078
11 6 5.7830 6.3808 -0.8413
12 8 6.8160 6.6275 -1.6871
13 6 7.4311 7.9145 -1.6017
14 6 5.1458 5.1423 -0.8742
15 8 5.5497 4.1799 -1.7446
16 6 5.0039 4.2284 -3.0644
17 7 4.0591 2.4848 0.0000
18 6 3.4558 1.2933 -0.0002
19 6 4.2302 0.1150 -0.0002
20 1 3.7493 -0.8474 0.0952
21 6 5.6229 0.1924 -0.1240
22 7 6.2169 1.3573 -0.1091
23 14 6.6322 -1.3684 -0.3104
24 1 5.7286 -2.5468 -0.2969
25 1 7.3741 -1.3276 -1.5961
26 1 7.5963 -1.4716 0.8144
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8899
29 1 -0.3633 0.5139 -0.8901
30 1 0.2172 2.3461 -0.0016
31 1 1.4088 4.5185 -0.0049
32 1 2.8928 5.7894 1.5738
33 1 4.1139 7.9189 1.5270
34 1 8.2394 7.9800 -2.3300
35 1 6.6902 8.6860 -1.8114
36 1 7.8326 8.0595 -0.5988
37 1 5.3417 5.1365 -3.5640
38 1 5.3386 3.3577 -3.6282
39 1 3.9154 4.2283 -3.0076
40 1 7.1720 1.4167 -0.2673
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001242958435.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:55:54
Heat of formation + Delta-G solvation = -48.438282 kcal
Electronic energy + Delta-G solvation = -26733.044177 eV
Core-core repulsion = 22900.076488 eV
Total energy + Delta-G solvation = -3832.967689 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.126 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.80984 -40.63217 -39.15405 -38.55583 -38.20714 -35.58997 -33.55493 -32.26233
-31.23199 -30.77402 -28.28041 -28.10181 -27.89873 -27.16694 -24.53368 -24.00357
-23.14379 -22.06914 -19.57113 -18.95349 -18.67763 -18.46122 -18.06016 -17.38985
-17.12016 -16.52698 -16.31747 -16.23238 -15.98308 -15.59413 -15.35661 -14.79706
-14.71614 -14.48195 -14.24168 -14.08838 -13.95046 -13.64843 -13.18605 -12.93139
-12.85494 -12.75045 -12.51874 -12.44338 -12.16387 -12.10201 -11.94515 -11.61728
-11.39306 -11.19207 -10.55143 -10.40671 -10.00601 -9.53996 -9.28899 -8.91420
-8.21371 -6.31287 -0.08751 0.15524 0.93225 1.13502 1.41837 1.50907
1.56628 2.10384 2.27143 2.58368 2.83581 2.87533 3.00756 3.41385
3.66488 3.85822 4.04820 4.20531 4.32430 4.36441 4.36579 4.41921
4.44668 4.46665 4.48461 4.49066 4.56286 4.68262 4.74081 4.74459
4.78473 4.87767 5.04782 5.24981 5.32747 5.38578 5.56028 5.67654
6.04142 6.16799 6.32129 6.42293 6.66494 6.84410 6.85175 7.15999
8.14508 8.49952
Molecular weight = 316.13amu
Principal moments of inertia in cm(-1)
A = 0.012372 B = 0.005432 C = 0.004164
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2262.677236 B = 5152.946180 C = 6722.990095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.334 6.334
3 C -0.039 4.039
4 C -0.146 4.146
5 C -0.258 4.258
6 C 0.123 3.877
7 C 0.023 3.977
8 C -0.183 4.183
9 C 0.133 3.867
10 N -0.535 5.535
11 C 0.286 3.714
12 O -0.320 6.320
13 C 0.037 3.963
14 C 0.035 3.965
15 O -0.309 6.309
16 C 0.045 3.955
17 N -0.452 5.452
18 C 0.212 3.788
19 C -0.447 4.447
20 H 0.083 0.917
21 C 0.024 3.976
22 N -0.727 5.727
23 Si 0.975 3.025
24 H -0.257 1.257
25 H -0.268 1.268
26 H -0.269 1.269
27 H 0.113 0.887
28 H 0.053 0.947
29 H 0.052 0.948
30 H 0.141 0.859
31 H 0.130 0.870
32 H 0.161 0.839
33 H 0.208 0.792
34 H 0.119 0.881
35 H 0.063 0.937
36 H 0.056 0.944
37 H 0.056 0.944
38 H 0.089 0.911
39 H 0.028 0.972
40 H 0.274 0.726
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.928 9.592 -1.618 10.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.247 6.247
3 C -0.088 4.088
4 C -0.170 4.170
5 C -0.281 4.281
6 C -0.018 4.018
7 C 0.014 3.986
8 C -0.203 4.203
9 C -0.021 4.021
10 N -0.261 5.261
11 C 0.106 3.894
12 O -0.227 6.227
13 C -0.058 4.058
14 C -0.013 4.013
15 O -0.223 6.223
16 C -0.049 4.049
17 N -0.167 5.167
18 C 0.084 3.916
19 C -0.479 4.479
20 H 0.101 0.899
21 C -0.199 4.199
22 N -0.348 5.348
23 Si 0.796 3.204
24 H -0.181 1.181
25 H -0.193 1.193
26 H -0.194 1.194
27 H 0.131 0.869
28 H 0.071 0.929
29 H 0.070 0.930
30 H 0.159 0.841
31 H 0.148 0.852
32 H 0.178 0.822
33 H 0.225 0.775
34 H 0.137 0.863
35 H 0.082 0.918
36 H 0.075 0.925
37 H 0.074 0.926
38 H 0.107 0.893
39 H 0.047 0.953
40 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges -2.039 9.966 -1.764 10.325
hybrid contribution -1.221 -1.112 -0.201 1.664
sum -3.261 8.854 -1.966 9.638
Atomic orbital electron populations
1.23123 0.78494 1.04398 1.01039 1.85894 1.21633 1.27249 1.89939
1.20439 0.93395 0.84762 1.10192 1.21210 0.99497 0.91552 1.04780
1.21276 0.93115 0.97723 1.16031 1.19803 0.90414 0.91767 0.99853
1.19511 0.91482 0.93182 0.94429 1.22289 1.03990 0.93202 1.00853
1.22891 0.88479 0.96606 0.94133 1.67304 1.18582 1.32045 1.08190
1.20327 0.89280 0.89308 0.90446 1.86307 1.43552 1.38046 1.54785
1.23076 0.97808 0.81477 1.03424 1.18958 0.96830 0.87837 0.97641
1.86281 1.66523 1.48158 1.21384 1.22876 0.97098 1.02311 0.82625
1.69023 1.35568 0.95615 1.16457 1.18584 0.86765 0.92547 0.93666
1.19694 0.91992 0.92926 1.43274 0.89902 1.26832 0.98996 1.00257
0.93806 1.70279 1.10841 1.26100 1.27591 0.85258 0.78103 0.78376
0.78614 1.18085 1.19265 1.19385 0.86918 0.92851 0.92973 0.84125
0.85233 0.82180 0.77507 0.86256 0.91847 0.92539 0.92587 0.89263
0.95323 0.91489
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.75 9.83 113.37 1.11 1.86 16
2 O -0.33 -14.96 9.62 -88.26 -0.85 -15.81 16
3 C -0.04 -1.92 6.74 23.26 0.16 -1.77 16
4 C -0.15 -6.21 9.11 22.50 0.21 -6.00 16
5 C -0.26 -10.95 9.52 22.74 0.22 -10.74 16
6 C 0.12 5.97 6.16 42.19 0.26 6.23 16
7 C 0.02 0.96 5.64 -19.78 -0.11 0.85 16
8 C -0.18 -5.90 9.54 22.59 0.22 -5.69 16
9 C 0.13 3.65 11.16 84.54 0.94 4.59 16
10 N -0.53 -17.29 9.19 -308.82 -2.84 -20.13 16
11 C 0.29 10.83 7.51 84.91 0.64 11.47 16
12 O -0.32 -11.18 10.27 -77.19 -0.79 -11.97 16
13 C 0.04 0.88 10.38 113.37 1.18 2.05 16
14 C 0.04 1.54 5.75 22.94 0.13 1.67 16
15 O -0.31 -14.63 9.23 -78.73 -0.73 -15.36 16
16 C 0.05 1.76 11.13 113.37 1.26 3.03 16
17 N -0.45 -25.28 7.13 -177.88 -1.27 -26.55 16
18 C 0.21 12.00 6.56 40.34 0.26 12.26 16
19 C -0.45 -25.27 8.93 23.38 0.21 -25.06 16
20 H 0.08 4.59 7.33 -2.91 -0.02 4.57 16
21 C 0.02 1.29 5.49 85.29 0.47 1.76 16
22 N -0.73 -40.69 11.48 21.84 0.25 -40.43 16
23 Si 0.98 40.44 29.57 68.60 2.03 42.47 16
24 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16
25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16
26 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16
27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16
28 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16
29 H 0.05 1.45 7.69 -2.38 -0.02 1.43 16
30 H 0.14 4.80 6.43 -2.91 -0.02 4.78 16
31 H 0.13 4.57 7.99 -2.91 -0.02 4.54 16
32 H 0.16 4.35 8.03 -2.91 -0.02 4.32 16
33 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16
34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16
35 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16
36 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16
37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16
38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16
39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.27 14.34 8.30 -92.71 -0.77 13.57 16
Total: -1.00 -73.15 349.69 4.02 -69.12
By element:
Atomic # 1 Polarization: 21.09 SS G_CDS: 1.07 Total: 22.15 kcal
Atomic # 6 Polarization: -10.64 SS G_CDS: 7.15 Total: -3.49 kcal
Atomic # 7 Polarization: -83.26 SS G_CDS: -3.86 Total: -87.12 kcal
Atomic # 8 Polarization: -40.77 SS G_CDS: -2.37 Total: -43.14 kcal
Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal
Total: -73.15 4.02 -69.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001242958435.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.686 kcal
(2) G-P(sol) polarization free energy of solvation -73.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.459 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal
(6) G-S(sol) free energy of system = (1) + (5) -48.438 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds