Wall clock time and date at job start Tue Mar 31 2020 11:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35523 * 117.00313 * 2 1 4 4 C 1.39109 * 120.48343 * 359.97438 * 3 2 1 5 5 C 1.38324 * 118.63892 * 179.97438 * 4 3 2 6 6 C 1.40091 * 119.57109 * 0.02562 * 5 4 3 7 7 C 1.48199 * 119.52129 * 179.97438 * 6 5 4 8 8 C 1.40025 * 120.90712 * 47.08154 * 7 6 5 9 9 C 1.37743 * 119.19127 * 179.97438 * 8 7 6 10 10 N 1.32078 * 121.09020 * 0.02562 * 9 8 7 11 11 C 1.32122 * 122.01082 * 359.97438 * 10 9 8 12 12 O 1.35769 * 119.66664 * 179.97438 * 11 10 9 13 13 C 1.42904 * 116.99589 * 359.97438 * 12 11 10 14 14 C 1.39316 * 120.67292 * 359.73248 * 11 10 9 15 15 O 1.35907 * 120.57504 * 180.26985 * 14 11 10 16 16 C 1.42902 * 116.99807 * 274.83389 * 15 14 11 17 17 N 1.32203 * 120.95914 * 0.02562 * 6 5 4 18 18 C 1.33559 * 121.45967 * 359.95771 * 17 6 5 19 19 C 1.41003 * 119.82873 * 180.02562 * 18 17 6 20 20 H 1.08001 * 120.00348 * 174.13417 * 19 18 17 21 21 C 1.40032 * 120.00145 * 354.13080 * 19 18 17 22 22 N 1.30774 * 120.00020 * 6.62900 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 186.63106 * 21 19 18 24 24 H 1.48505 * 109.46967 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47426 * 119.99965 * 23 21 19 26 26 H 1.48503 * 109.46786 * 240.00258 * 23 21 19 27 27 H 1.08997 * 109.47600 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47190 * 300.00576 * 1 2 3 29 29 H 1.09009 * 109.46648 * 59.99913 * 1 2 3 30 30 H 1.07993 * 120.68343 * 359.95944 * 4 3 2 31 31 H 1.08000 * 120.21677 * 179.72455 * 5 4 3 32 32 H 1.07994 * 120.39960 * 0.02562 * 8 7 6 33 33 H 1.08003 * 119.45426 * 180.02562 * 9 8 7 34 34 H 1.09001 * 109.47185 * 180.02562 * 13 12 11 35 35 H 1.08999 * 109.47212 * 300.00081 * 13 12 11 36 36 H 1.08994 * 109.47260 * 59.99875 * 13 12 11 37 37 H 1.09004 * 109.46516 * 64.95860 * 16 15 14 38 38 H 1.09000 * 109.47040 * 184.95473 * 16 15 14 39 39 H 1.08999 * 109.46940 * 304.96207 * 16 15 14 40 40 H 0.97000 * 119.99820 * 184.99921 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2075 0.0000 4 6 1.2966 2.3805 -0.0005 5 6 1.9640 3.5921 0.0000 6 6 3.3648 3.6098 0.0006 7 6 4.0787 4.9085 0.0006 8 6 3.7079 5.9331 0.8801 9 6 4.3961 7.1259 0.8503 10 7 5.3953 7.3159 0.0078 11 6 5.7830 6.3808 -0.8413 12 8 6.8160 6.6275 -1.6871 13 6 7.4311 7.9145 -1.6017 14 6 5.1458 5.1423 -0.8742 15 8 5.5497 4.1799 -1.7446 16 6 5.0039 4.2284 -3.0644 17 7 4.0591 2.4848 0.0000 18 6 3.4558 1.2933 -0.0002 19 6 4.2302 0.1150 -0.0002 20 1 3.7493 -0.8474 0.0952 21 6 5.6229 0.1924 -0.1240 22 7 6.2169 1.3573 -0.1091 23 14 6.6322 -1.3684 -0.3104 24 1 5.7286 -2.5468 -0.2969 25 1 7.3741 -1.3276 -1.5961 26 1 7.5963 -1.4716 0.8144 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 0.2172 2.3461 -0.0016 31 1 1.4088 4.5185 -0.0049 32 1 2.8928 5.7894 1.5738 33 1 4.1139 7.9189 1.5270 34 1 8.2394 7.9800 -2.3300 35 1 6.6902 8.6860 -1.8114 36 1 7.8326 8.0595 -0.5988 37 1 5.3417 5.1365 -3.5640 38 1 5.3386 3.3577 -3.6282 39 1 3.9154 4.2283 -3.0076 40 1 7.1720 1.4167 -0.2673 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242958435.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:54 Heat of formation + Delta-G solvation = -48.438282 kcal Electronic energy + Delta-G solvation = -26733.044177 eV Core-core repulsion = 22900.076488 eV Total energy + Delta-G solvation = -3832.967689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80984 -40.63217 -39.15405 -38.55583 -38.20714 -35.58997 -33.55493 -32.26233 -31.23199 -30.77402 -28.28041 -28.10181 -27.89873 -27.16694 -24.53368 -24.00357 -23.14379 -22.06914 -19.57113 -18.95349 -18.67763 -18.46122 -18.06016 -17.38985 -17.12016 -16.52698 -16.31747 -16.23238 -15.98308 -15.59413 -15.35661 -14.79706 -14.71614 -14.48195 -14.24168 -14.08838 -13.95046 -13.64843 -13.18605 -12.93139 -12.85494 -12.75045 -12.51874 -12.44338 -12.16387 -12.10201 -11.94515 -11.61728 -11.39306 -11.19207 -10.55143 -10.40671 -10.00601 -9.53996 -9.28899 -8.91420 -8.21371 -6.31287 -0.08751 0.15524 0.93225 1.13502 1.41837 1.50907 1.56628 2.10384 2.27143 2.58368 2.83581 2.87533 3.00756 3.41385 3.66488 3.85822 4.04820 4.20531 4.32430 4.36441 4.36579 4.41921 4.44668 4.46665 4.48461 4.49066 4.56286 4.68262 4.74081 4.74459 4.78473 4.87767 5.04782 5.24981 5.32747 5.38578 5.56028 5.67654 6.04142 6.16799 6.32129 6.42293 6.66494 6.84410 6.85175 7.15999 8.14508 8.49952 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.012372 B = 0.005432 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.677236 B = 5152.946180 C = 6722.990095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.334 6.334 3 C -0.039 4.039 4 C -0.146 4.146 5 C -0.258 4.258 6 C 0.123 3.877 7 C 0.023 3.977 8 C -0.183 4.183 9 C 0.133 3.867 10 N -0.535 5.535 11 C 0.286 3.714 12 O -0.320 6.320 13 C 0.037 3.963 14 C 0.035 3.965 15 O -0.309 6.309 16 C 0.045 3.955 17 N -0.452 5.452 18 C 0.212 3.788 19 C -0.447 4.447 20 H 0.083 0.917 21 C 0.024 3.976 22 N -0.727 5.727 23 Si 0.975 3.025 24 H -0.257 1.257 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.113 0.887 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.161 0.839 33 H 0.208 0.792 34 H 0.119 0.881 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.928 9.592 -1.618 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.247 6.247 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.281 4.281 6 C -0.018 4.018 7 C 0.014 3.986 8 C -0.203 4.203 9 C -0.021 4.021 10 N -0.261 5.261 11 C 0.106 3.894 12 O -0.227 6.227 13 C -0.058 4.058 14 C -0.013 4.013 15 O -0.223 6.223 16 C -0.049 4.049 17 N -0.167 5.167 18 C 0.084 3.916 19 C -0.479 4.479 20 H 0.101 0.899 21 C -0.199 4.199 22 N -0.348 5.348 23 Si 0.796 3.204 24 H -0.181 1.181 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.159 0.841 31 H 0.148 0.852 32 H 0.178 0.822 33 H 0.225 0.775 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.039 9.966 -1.764 10.325 hybrid contribution -1.221 -1.112 -0.201 1.664 sum -3.261 8.854 -1.966 9.638 Atomic orbital electron populations 1.23123 0.78494 1.04398 1.01039 1.85894 1.21633 1.27249 1.89939 1.20439 0.93395 0.84762 1.10192 1.21210 0.99497 0.91552 1.04780 1.21276 0.93115 0.97723 1.16031 1.19803 0.90414 0.91767 0.99853 1.19511 0.91482 0.93182 0.94429 1.22289 1.03990 0.93202 1.00853 1.22891 0.88479 0.96606 0.94133 1.67304 1.18582 1.32045 1.08190 1.20327 0.89280 0.89308 0.90446 1.86307 1.43552 1.38046 1.54785 1.23076 0.97808 0.81477 1.03424 1.18958 0.96830 0.87837 0.97641 1.86281 1.66523 1.48158 1.21384 1.22876 0.97098 1.02311 0.82625 1.69023 1.35568 0.95615 1.16457 1.18584 0.86765 0.92547 0.93666 1.19694 0.91992 0.92926 1.43274 0.89902 1.26832 0.98996 1.00257 0.93806 1.70279 1.10841 1.26100 1.27591 0.85258 0.78103 0.78376 0.78614 1.18085 1.19265 1.19385 0.86918 0.92851 0.92973 0.84125 0.85233 0.82180 0.77507 0.86256 0.91847 0.92539 0.92587 0.89263 0.95323 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.83 113.37 1.11 1.86 16 2 O -0.33 -14.96 9.62 -88.26 -0.85 -15.81 16 3 C -0.04 -1.92 6.74 23.26 0.16 -1.77 16 4 C -0.15 -6.21 9.11 22.50 0.21 -6.00 16 5 C -0.26 -10.95 9.52 22.74 0.22 -10.74 16 6 C 0.12 5.97 6.16 42.19 0.26 6.23 16 7 C 0.02 0.96 5.64 -19.78 -0.11 0.85 16 8 C -0.18 -5.90 9.54 22.59 0.22 -5.69 16 9 C 0.13 3.65 11.16 84.54 0.94 4.59 16 10 N -0.53 -17.29 9.19 -308.82 -2.84 -20.13 16 11 C 0.29 10.83 7.51 84.91 0.64 11.47 16 12 O -0.32 -11.18 10.27 -77.19 -0.79 -11.97 16 13 C 0.04 0.88 10.38 113.37 1.18 2.05 16 14 C 0.04 1.54 5.75 22.94 0.13 1.67 16 15 O -0.31 -14.63 9.23 -78.73 -0.73 -15.36 16 16 C 0.05 1.76 11.13 113.37 1.26 3.03 16 17 N -0.45 -25.28 7.13 -177.88 -1.27 -26.55 16 18 C 0.21 12.00 6.56 40.34 0.26 12.26 16 19 C -0.45 -25.27 8.93 23.38 0.21 -25.06 16 20 H 0.08 4.59 7.33 -2.91 -0.02 4.57 16 21 C 0.02 1.29 5.49 85.29 0.47 1.76 16 22 N -0.73 -40.69 11.48 21.84 0.25 -40.43 16 23 Si 0.98 40.44 29.57 68.60 2.03 42.47 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 26 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 27 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.05 1.47 7.69 -2.39 -0.02 1.46 16 29 H 0.05 1.45 7.69 -2.38 -0.02 1.43 16 30 H 0.14 4.80 6.43 -2.91 -0.02 4.78 16 31 H 0.13 4.57 7.99 -2.91 -0.02 4.54 16 32 H 0.16 4.35 8.03 -2.91 -0.02 4.32 16 33 H 0.21 3.51 8.06 -2.91 -0.02 3.48 16 34 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 36 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 37 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 38 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.27 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -73.15 349.69 4.02 -69.12 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 1.07 Total: 22.15 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 7.15 Total: -3.49 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -3.86 Total: -87.12 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -2.37 Total: -43.14 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -73.15 4.02 -69.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242958435.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.686 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds