Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 114.00340 * 2 1 4 4 C 1.50698 * 109.47000 * 179.97438 * 3 2 1 5 5 N 1.31829 * 119.02652 * 269.97800 * 4 3 2 6 6 C 1.32893 * 120.96780 * 180.02562 * 5 4 3 7 7 O 1.35535 * 120.46438 * 180.02562 * 6 5 4 8 8 C 1.42898 * 117.00127 * 0.02562 * 7 6 5 9 9 C 1.39143 * 119.06654 * 359.72784 * 6 5 4 10 10 C 1.39416 * 118.23738 * 0.53465 * 9 6 5 11 11 C 1.48216 * 120.52743 * 179.74140 * 10 9 6 12 12 C 1.39495 * 120.05416 * 179.72157 * 11 10 9 13 13 C 1.37791 * 119.94201 * 180.02562 * 12 11 10 14 14 C 1.39032 * 120.05751 * 0.26158 * 13 12 11 15 15 O 1.35665 * 119.94714 * 179.71847 * 14 13 12 16 16 C 1.34807 * 117.00068 * 354.44969 * 15 14 13 17 17 H 1.08004 * 119.99997 * 5.05498 * 16 15 14 18 18 C 1.38665 * 120.00418 * 185.05696 * 16 15 14 19 19 N 1.31546 * 119.99855 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00414 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47135 * 89.99764 * 20 18 16 22 22 H 1.48499 * 109.47230 * 209.99970 * 20 18 16 23 23 H 1.48503 * 109.46839 * 329.99636 * 20 18 16 24 24 C 1.39038 * 120.10976 * 359.48660 * 14 13 12 25 25 C 1.37795 * 120.05254 * 0.50854 * 24 14 13 26 26 N 1.31621 * 119.02129 * 90.00253 * 4 3 2 27 27 H 1.09000 * 109.46648 * 300.00093 * 1 2 3 28 28 H 1.09003 * 109.46612 * 59.99735 * 1 2 3 29 29 H 1.08993 * 109.47449 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46670 * 60.00482 * 3 2 1 31 31 H 1.08995 * 109.46961 * 299.99850 * 3 2 1 32 32 H 1.09000 * 109.46998 * 299.99665 * 8 7 6 33 33 H 1.09000 * 109.47256 * 59.99433 * 8 7 6 34 34 H 1.08998 * 109.47223 * 180.02562 * 8 7 6 35 35 H 1.08003 * 120.88170 * 180.27490 * 9 6 5 36 36 H 1.08002 * 120.03088 * 0.04481 * 12 11 10 37 37 H 1.08000 * 119.97530 * 179.97438 * 13 12 11 38 38 H 0.96998 * 120.00042 * 180.02562 * 19 18 16 39 39 H 1.07997 * 119.97304 * 180.26211 * 24 14 13 40 40 H 1.07995 * 120.03256 * 179.77313 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.1498 1.1364 1.1536 6 6 5.4738 1.0320 1.1992 7 8 6.1185 0.9810 2.3903 8 6 5.3116 1.0439 3.5680 9 6 6.1884 0.9694 0.0069 10 6 5.4787 1.0309 -1.1915 11 6 6.1892 0.9745 -2.4910 12 6 5.4688 1.0310 -3.6842 13 6 6.1316 0.9778 -4.8910 14 6 7.5168 0.8625 -4.9202 15 8 8.1667 0.8045 -6.1096 16 6 7.4055 0.7477 -7.2208 17 1 6.3315 0.8319 -7.1445 18 6 8.0014 0.5811 -8.4617 19 7 9.3095 0.4780 -8.5547 20 14 6.9467 0.5031 -10.0015 21 1 6.7669 1.8720 -10.5482 22 1 7.6144 -0.3513 -11.0161 23 1 5.6204 -0.0735 -9.6643 24 6 8.2376 0.8112 -3.7323 25 6 7.5794 0.8641 -2.5229 26 7 4.1496 1.1357 -1.1500 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 4.7539 1.9804 3.5767 33 1 4.6145 0.2059 3.5760 34 1 5.9507 0.9939 4.4495 35 1 7.2647 0.8799 0.0098 36 1 4.3924 1.1167 -3.6621 37 1 5.5743 1.0211 -5.8151 38 1 9.7264 0.3619 -9.4227 39 1 9.3139 0.7258 -3.7576 40 1 8.1393 0.8206 -1.6004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589672.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -29.532189 kcal Electronic energy + Delta-G solvation = -24823.589151 eV Core-core repulsion = 20991.441292 eV Total energy + Delta-G solvation = -3832.147859 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.15637 -39.17623 -38.64442 -37.82948 -36.64061 -33.41622 -32.44748 -32.29196 -30.36252 -29.04077 -28.55047 -27.15049 -26.01391 -25.63146 -23.58030 -22.96839 -21.70698 -20.79455 -18.55861 -18.14474 -17.61061 -17.04179 -16.80498 -16.10017 -15.77333 -15.66223 -15.47050 -15.09730 -14.58486 -14.46029 -14.24718 -14.12907 -13.76238 -13.46267 -13.02965 -12.87749 -12.61887 -12.46544 -12.17534 -11.95663 -11.82737 -11.78070 -11.38972 -11.21004 -11.08481 -10.96111 -10.57587 -10.44987 -10.07450 -9.94151 -9.51247 -9.25869 -9.13028 -8.90762 -8.33916 -7.26799 -6.64038 -4.19017 0.75282 1.13195 2.16036 2.34935 2.83960 3.04930 3.06204 3.11262 3.32077 3.83391 3.87060 4.04073 4.28369 4.55831 4.89396 4.93491 4.94129 5.04453 5.06530 5.08945 5.11306 5.15825 5.22243 5.26115 5.35090 5.43144 5.44586 5.54112 5.66815 5.74304 6.04522 6.21825 6.29798 6.52126 6.76915 6.84067 6.85962 6.95343 7.07601 7.15971 7.26871 7.32674 7.63330 7.81695 8.21482 8.80817 9.47016 10.52512 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016727 B = 0.002811 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.547493 B = 9958.367269 C =11521.484515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.137 3.863 4 C 0.360 3.640 5 N -0.582 5.582 6 C 0.362 3.638 7 O -0.303 6.303 8 C 0.039 3.961 9 C -0.255 4.255 10 C 0.281 3.719 11 C -0.178 4.178 12 C -0.011 4.011 13 C -0.246 4.246 14 C 0.171 3.829 15 O -0.161 6.161 16 C -0.391 4.391 17 H 0.098 0.902 18 C 0.041 3.959 19 N -0.852 5.852 20 Si 0.945 3.055 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.265 1.265 24 C -0.198 4.198 25 C -0.037 4.037 26 N -0.530 5.530 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.274 0.726 39 H 0.124 0.876 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.939 1.727 17.532 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.299 6.299 3 C 0.058 3.942 4 C 0.090 3.910 5 N -0.315 5.315 6 C 0.177 3.823 7 O -0.208 6.208 8 C -0.056 4.056 9 C -0.277 4.277 10 C 0.143 3.857 11 C -0.181 4.181 12 C -0.030 4.030 13 C -0.265 4.265 14 C 0.114 3.886 15 O -0.062 6.062 16 C -0.467 4.467 17 H 0.115 0.885 18 C -0.165 4.165 19 N -0.485 5.485 20 Si 0.769 3.231 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.217 4.217 25 C -0.057 4.057 26 N -0.250 5.250 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.170 0.830 36 H 0.141 0.859 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.142 0.858 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.040 1.563 17.373 21.195 hybrid contribution -0.001 0.116 -0.474 0.488 sum -12.041 1.679 16.899 20.818 Atomic orbital electron populations 1.22769 0.80276 1.03050 1.00170 1.87943 1.20070 1.26409 1.95496 1.20924 0.85225 0.85898 1.02135 1.22114 0.95912 0.90350 0.82638 1.67709 1.08538 1.23350 1.31924 1.19854 0.87543 0.88568 0.86292 1.86239 1.35241 1.86972 1.12310 1.22890 0.95929 1.02578 0.84187 1.21809 1.02962 1.12883 0.90093 1.19991 0.87792 0.85441 0.92517 1.17758 0.92512 1.18395 0.89412 1.20898 0.99328 0.92116 0.90645 1.21139 0.94255 1.12660 0.98468 1.19577 0.90942 0.90963 0.87111 1.83932 1.35294 1.75905 1.11064 1.21489 0.91453 1.51555 0.82212 0.88456 1.25394 0.96425 0.95932 0.98723 1.70030 1.08963 1.43454 1.26029 0.85644 0.79186 0.78812 0.79486 1.19635 1.20061 1.18890 1.20103 0.99794 1.12087 0.89734 1.20692 0.92491 0.95624 0.96858 1.68227 1.09424 1.18281 1.29070 0.93912 0.93627 0.89380 0.90825 0.90254 0.92228 0.92109 0.88507 0.83027 0.85852 0.84986 0.91599 0.85822 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.88 10.69 -35.23 -0.38 -5.25 16 3 C 0.14 1.63 6.36 36.00 0.23 1.86 16 4 C 0.36 5.52 7.27 -157.31 -1.14 4.37 16 5 N -0.58 -8.77 9.27 -10.85 -0.10 -8.87 16 6 C 0.36 5.41 7.52 -16.76 -0.13 5.29 16 7 O -0.30 -3.92 10.49 -18.30 -0.19 -4.11 16 8 C 0.04 0.36 10.41 101.05 1.05 1.42 16 9 C -0.25 -3.91 9.48 -38.81 -0.37 -4.28 16 10 C 0.28 4.81 6.76 -82.65 -0.56 4.25 16 11 C -0.18 -3.25 5.88 -104.86 -0.62 -3.87 16 12 C -0.01 -0.20 9.58 -39.28 -0.38 -0.58 16 13 C -0.25 -5.19 9.15 -39.45 -0.36 -5.55 16 14 C 0.17 3.94 6.65 -38.99 -0.26 3.68 16 15 O -0.16 -4.38 9.75 0.38 0.00 -4.38 16 16 C -0.39 -10.41 9.48 30.89 0.29 -10.12 16 17 H 0.10 2.38 5.19 -52.48 -0.27 2.11 16 18 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 19 N -0.85 -23.87 13.67 55.48 0.76 -23.11 16 20 Si 0.94 19.58 29.55 -169.99 -5.02 14.55 16 21 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 22 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.20 -3.96 9.98 -39.45 -0.39 -4.36 16 25 C -0.04 -0.65 9.43 -39.27 -0.37 -1.02 16 26 N -0.53 -9.02 9.48 -7.36 -0.07 -9.09 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.15 2.02 6.31 -52.48 -0.33 1.69 16 36 H 0.12 2.18 7.57 -52.49 -0.40 1.79 16 37 H 0.13 2.75 5.62 -52.49 -0.30 2.46 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.12 1.69 6.26 -52.49 -0.33 1.36 16 LS Contribution 351.09 15.07 5.29 5.29 Total: -1.00 -31.29 351.09 -6.25 -37.54 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -4.56 Total: 3.95 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.98 Total: -6.52 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.59 Total: -41.07 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -0.56 Total: -13.74 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.29 -6.25 -37.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589672.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.008 kcal (2) G-P(sol) polarization free energy of solvation -31.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds