Wall clock time and date at job start Tue Mar 31 2020 11:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42897 * 113.99868 * 2 1 4 4 O 1.42895 * 109.47375 * 83.82794 * 3 2 1 5 5 C 1.42898 * 114.00275 * 292.52718 * 4 3 2 6 6 C 1.50705 * 109.47091 * 203.83329 * 3 2 1 7 7 N 1.31982 * 120.06436 * 290.66204 * 6 3 2 8 8 C 1.32204 * 120.09884 * 179.97438 * 7 6 3 9 9 C 1.38434 * 120.23579 * 359.97438 * 8 7 6 10 10 N 1.32024 * 120.13097 * 359.76050 * 9 8 7 11 11 C 1.32997 * 119.89429 * 0.51627 * 10 9 8 12 12 C 1.48233 * 120.11260 * 179.74315 * 11 10 9 13 13 C 1.39480 * 120.05869 * 134.79930 * 12 11 10 14 14 C 1.37811 * 119.94652 * 180.27362 * 13 12 11 15 15 C 1.39015 * 120.05550 * 359.45634 * 14 13 12 16 16 O 1.35669 * 119.94981 * 180.27619 * 15 14 13 17 17 C 1.34807 * 117.00758 * 174.43491 * 16 15 14 18 18 H 1.08003 * 119.99683 * 5.07656 * 17 16 15 19 19 C 1.38661 * 120.00500 * 185.08015 * 17 16 15 20 20 N 1.31544 * 119.99824 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00076 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47247 * 60.00035 * 21 19 17 23 23 H 1.48497 * 109.47127 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46967 * 300.00064 * 21 19 17 25 25 C 1.39029 * 120.11064 * 0.29289 * 15 14 13 26 26 C 1.37810 * 120.05102 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47384 * 186.60626 * 1 2 3 28 28 H 1.08998 * 109.47276 * 306.60436 * 1 2 3 29 29 H 1.09003 * 109.47499 * 66.60302 * 1 2 3 30 30 H 1.09001 * 109.47106 * 323.82463 * 3 2 1 31 31 H 1.08993 * 109.47221 * 313.77225 * 5 4 3 32 32 H 1.09009 * 109.46847 * 73.76971 * 5 4 3 33 33 H 1.08994 * 109.47246 * 193.76609 * 5 4 3 34 34 H 1.08011 * 119.88327 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.93326 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.02662 * 0.02934 * 13 12 11 37 37 H 1.07996 * 119.97017 * 179.72882 * 14 13 12 38 38 H 0.97007 * 119.99997 * 179.97438 * 20 19 17 39 39 H 1.07994 * 119.97452 * 179.97438 * 25 15 14 40 40 H 1.08002 * 120.02706 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 2.0716 1.7996 1.3394 5 6 0.7933 2.0647 1.9204 6 6 3.4018 1.2358 -0.5741 7 7 4.3647 0.6324 0.0973 8 6 5.5856 0.5704 -0.4059 9 6 5.8610 1.1368 -1.6387 10 7 4.9037 1.7380 -2.3206 11 6 3.6748 1.8082 -1.8168 12 6 2.5976 2.4871 -2.5757 13 6 1.3412 1.8919 -2.6894 14 6 0.3431 2.5225 -3.4003 15 6 0.5841 3.7560 -3.9943 16 8 -0.4018 4.3774 -4.6889 17 6 -0.1417 5.6202 -5.1419 18 1 0.8436 6.0449 -5.0180 19 6 -1.1390 6.3533 -5.7669 20 7 -2.3389 5.8358 -5.9182 21 14 -0.7787 8.0756 -6.3939 22 1 0.3095 8.0176 -7.4027 23 1 -2.0021 8.6416 -7.0168 24 1 -0.3572 8.9370 -5.2601 25 6 1.8339 4.3538 -3.8781 26 6 2.8370 3.7247 -3.1730 27 1 -0.3634 -1.0209 0.1182 28 1 -0.3634 0.6128 0.8250 29 1 -0.3634 0.4081 -0.9432 30 1 1.4001 1.9748 -0.6066 31 1 0.1787 2.6170 1.2096 32 1 0.3043 1.1224 2.1681 33 1 0.9217 2.6565 2.8266 34 1 6.3710 0.0762 0.1468 35 1 6.8601 1.0829 -2.0454 36 1 1.1520 0.9359 -2.2240 37 1 -0.6285 2.0600 -3.4922 38 1 -3.0368 6.3488 -6.3551 39 1 2.0189 5.3119 -4.3409 40 1 3.8078 4.1892 -3.0833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243591051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:58 Heat of formation + Delta-G solvation = -49.786798 kcal Electronic energy + Delta-G solvation = -26127.683238 eV Core-core repulsion = 22294.657073 eV Total energy + Delta-G solvation = -3833.026165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38522 -40.79391 -40.17059 -38.40868 -37.05086 -35.38704 -34.48540 -33.68305 -32.06758 -30.35965 -29.30800 -27.50959 -26.92904 -26.86919 -25.41366 -23.64308 -23.57314 -22.54817 -20.08487 -19.10029 -18.96856 -18.45773 -18.26227 -17.74472 -17.58961 -16.46881 -16.29083 -16.08519 -15.67920 -15.58533 -15.51656 -15.40631 -15.06618 -14.71756 -14.63911 -14.41032 -14.18987 -13.60102 -13.57819 -13.39010 -13.00265 -12.71012 -12.61004 -12.56247 -12.49538 -12.41848 -12.16253 -12.14679 -11.31569 -11.08834 -10.87360 -10.84488 -10.41462 -10.13552 -9.93722 -8.96863 -8.51740 -6.19036 -0.54833 -0.01688 0.43642 0.63089 1.36953 1.46429 1.52297 2.15538 2.20208 2.43634 2.67056 2.98806 3.02393 3.05085 3.18970 3.35984 3.49720 3.55735 3.84338 3.96999 3.99891 4.20655 4.23906 4.25914 4.33432 4.38363 4.41699 4.44309 4.48000 4.60345 4.68933 4.80459 4.86537 5.05404 5.10568 5.24700 5.43544 5.51987 5.56263 5.82695 5.92778 5.93710 5.95906 6.28321 6.74840 6.92522 7.66697 8.69795 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016364 B = 0.003605 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.709747 B = 7764.206884 C = 8752.025668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.400 6.400 3 C 0.297 3.703 4 O -0.403 6.403 5 C 0.012 3.988 6 C 0.067 3.933 7 N -0.424 5.424 8 C 0.040 3.960 9 C 0.074 3.926 10 N -0.457 5.457 11 C 0.154 3.846 12 C -0.149 4.149 13 C -0.049 4.049 14 C -0.192 4.192 15 C 0.137 3.863 16 O -0.214 6.214 17 C -0.418 4.418 18 H 0.106 0.894 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.016 2.984 22 H -0.257 1.257 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.023 4.023 27 H 0.111 0.889 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.105 0.895 34 H 0.215 0.785 35 H 0.218 0.782 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.275 0.725 39 H 0.131 0.869 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.471 -8.210 12.058 18.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 O -0.320 6.320 3 C 0.201 3.799 4 O -0.323 6.323 5 C -0.083 4.083 6 C -0.073 4.073 7 N -0.139 5.139 8 C -0.121 4.121 9 C -0.088 4.088 10 N -0.171 5.171 11 C 0.017 3.983 12 C -0.151 4.151 13 C -0.068 4.068 14 C -0.212 4.212 15 C 0.084 3.916 16 O -0.119 6.119 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.214 4.214 20 N -0.549 5.549 21 Si 0.835 3.165 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.181 1.181 25 C -0.257 4.257 26 C -0.042 4.042 27 H 0.130 0.870 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.231 0.769 35 H 0.235 0.765 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 11.263 -8.362 11.996 18.457 hybrid contribution -0.604 0.831 -0.542 1.162 sum 10.658 -7.530 11.455 17.364 Atomic orbital electron populations 1.23549 0.78996 1.05396 1.02027 1.88047 1.21898 1.28256 1.93846 1.21893 0.89622 0.84225 0.84169 1.88036 1.31177 1.83597 1.29538 1.23285 0.84413 1.01254 0.99383 1.21287 0.95017 0.98546 0.92421 1.68203 1.01194 1.11232 1.33287 1.24591 0.94329 0.97760 0.95413 1.24665 1.00387 0.91400 0.92355 1.68690 0.99823 1.14915 1.33708 1.20322 0.92315 0.94487 0.91191 1.18044 0.92654 0.97329 1.07107 1.20940 0.90944 0.98704 0.96226 1.20270 1.01166 0.95303 1.04421 1.19966 0.88723 0.92889 0.89978 1.83923 1.37214 1.29817 1.60971 1.21850 0.99728 0.89167 1.38606 0.87661 1.26556 0.94004 1.04307 0.96519 1.70153 1.03408 1.39847 1.41462 0.84679 0.78449 0.74364 0.79006 1.18150 1.19631 1.18111 1.21201 0.93529 1.03455 1.07563 1.20904 0.97912 0.92976 0.92381 0.87033 0.91307 0.92912 0.89532 0.93055 0.91719 0.87683 0.76873 0.76531 0.84439 0.85123 0.91572 0.85120 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.10 10.28 113.37 1.17 1.07 16 2 O -0.40 -11.51 10.00 -126.21 -1.26 -12.77 16 3 C 0.30 9.05 2.09 71.24 0.15 9.19 16 4 O -0.40 -12.15 10.54 -126.21 -1.33 -13.48 16 5 C 0.01 0.25 9.52 113.37 1.08 1.33 16 6 C 0.07 2.13 6.07 42.85 0.26 2.39 16 7 N -0.42 -12.33 10.34 -182.41 -1.89 -14.22 16 8 C 0.04 0.80 11.22 84.68 0.95 1.75 16 9 C 0.07 1.45 11.22 84.71 0.95 2.40 16 10 N -0.46 -13.12 10.34 -184.28 -1.91 -15.03 16 11 C 0.15 4.96 6.35 41.94 0.27 5.23 16 12 C -0.15 -5.25 5.14 -20.02 -0.10 -5.35 16 13 C -0.05 -1.71 7.36 22.47 0.17 -1.55 16 14 C -0.19 -7.70 9.98 22.36 0.22 -7.48 16 15 C 0.14 6.44 6.65 22.65 0.15 6.59 16 16 O -0.21 -12.14 9.75 -21.62 -0.21 -12.35 16 17 C -0.42 -23.06 9.48 67.92 0.64 -22.41 16 18 H 0.11 5.29 5.19 -2.91 -0.02 5.28 16 19 C -0.01 -0.80 5.49 84.84 0.47 -0.33 16 20 N -0.91 -53.37 13.67 21.61 0.30 -53.08 16 21 Si 1.02 40.77 29.55 68.60 2.03 42.80 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 24 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 25 C -0.24 -10.04 9.15 22.36 0.20 -9.84 16 26 C -0.02 -0.84 9.67 22.47 0.22 -0.62 16 27 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.07 1.24 4.38 -2.39 -0.01 1.23 16 29 H 0.05 1.10 7.07 -2.39 -0.02 1.08 16 30 H 0.09 2.69 4.44 -2.39 -0.01 2.68 16 31 H 0.05 1.05 7.80 -2.39 -0.02 1.03 16 32 H 0.06 1.20 6.14 -2.38 -0.01 1.18 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.22 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.14 4.22 4.91 -2.91 -0.01 4.21 16 37 H 0.13 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.28 14.78 8.31 -92.70 -0.77 14.01 16 39 H 0.13 5.48 5.62 -2.91 -0.02 5.47 16 40 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -74.01 337.55 3.62 -70.39 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: 1.10 Total: 25.34 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 6.79 Total: -17.61 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.50 Total: -82.32 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -2.80 Total: -38.60 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Total: -74.01 3.62 -70.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.604 kcal (2) G-P(sol) polarization free energy of solvation -74.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds