Wall clock time and date at job start Tue Mar 31 2020 12:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99965 * 2 1 4 4 C 1.53003 * 109.47266 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47124 * 64.99724 * 4 3 2 6 6 N 1.28382 * 119.11026 * 270.00352 * 5 4 3 7 7 C 1.31253 * 122.29435 * 180.02562 * 6 5 4 8 8 C 1.48274 * 119.88072 * 180.02562 * 7 6 5 9 9 C 1.39459 * 120.05462 * 179.70148 * 8 7 6 10 10 C 1.37822 * 119.94532 * 179.78571 * 9 8 7 11 11 C 1.39014 * 120.05453 * 0.48888 * 10 9 8 12 12 O 1.35687 * 119.94647 * 179.76625 * 11 10 9 13 13 C 1.34808 * 117.00013 * 174.43081 * 12 11 10 14 14 H 1.08002 * 120.00203 * 5.05217 * 13 12 11 15 15 C 1.38645 * 120.00099 * 185.05775 * 13 12 11 16 16 N 1.31556 * 119.99895 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00156 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47194 * 59.99106 * 17 15 13 19 19 H 1.48494 * 109.47288 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46545 * 299.99421 * 17 15 13 21 21 C 1.39002 * 120.10457 * 359.74164 * 11 10 9 22 22 C 1.37827 * 120.05836 * 0.02562 * 21 11 10 23 23 C 1.41489 * 120.24120 * 359.97248 * 7 6 5 24 24 C 1.36341 * 118.24539 * 0.02865 * 23 7 6 25 25 C 1.34622 * 119.10505 * 90.26708 * 5 4 3 26 26 O 1.22053 * 120.24173 * 0.02562 * 25 5 4 27 27 H 1.08997 * 109.47137 * 299.99900 * 1 2 3 28 28 H 1.08998 * 109.47402 * 60.00066 * 1 2 3 29 29 H 1.09003 * 109.46847 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47308 * 59.99964 * 3 2 1 31 31 H 1.09007 * 109.47129 * 299.99932 * 3 2 1 32 32 H 1.08996 * 109.46486 * 304.99785 * 4 3 2 33 33 H 1.08997 * 109.46788 * 184.99937 * 4 3 2 34 34 H 1.08001 * 120.03120 * 359.97438 * 9 8 7 35 35 H 1.08004 * 119.97537 * 180.20674 * 10 9 8 36 36 H 0.97004 * 120.00080 * 180.02562 * 16 15 13 37 37 H 1.08008 * 119.97478 * 180.02562 * 21 11 10 38 38 H 1.08005 * 120.02723 * 180.02562 * 22 21 11 39 39 H 1.08001 * 120.87806 * 180.02562 * 23 7 6 40 40 H 1.08000 * 121.04478 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 7 4.0833 -0.7135 -1.3126 7 6 4.4724 -1.3343 -2.4017 8 6 4.5774 -2.8132 -2.4115 9 6 4.9844 -3.4769 -3.5686 10 6 5.0854 -4.8514 -3.5739 11 6 4.7723 -5.5769 -2.4302 12 8 4.8680 -6.9304 -2.4393 13 6 4.6627 -7.5663 -1.2685 14 1 4.3540 -7.0076 -0.3973 15 6 4.8479 -8.9377 -1.1827 16 7 5.2235 -9.6184 -2.2439 17 14 4.5626 -9.8190 0.4395 18 1 3.1558 -9.6192 0.8707 19 1 4.8258 -11.2703 0.2673 20 1 5.4792 -9.2681 1.4699 21 6 4.3618 -4.9180 -1.2771 22 6 4.2637 -3.5433 -1.2654 23 6 4.7909 -0.5973 -3.5667 24 6 4.6822 0.7610 -3.5208 25 6 4.2616 1.3502 -2.3077 26 8 4.1547 2.5627 -2.2179 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6886 1.8463 -0.8900 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 5.2231 -2.9140 -4.4589 35 1 5.4038 -5.3656 -4.4687 36 1 5.3528 -10.5779 -2.1840 37 1 4.1194 -5.4838 -0.3896 38 1 3.9451 -3.0318 -0.3691 39 1 5.1117 -1.0975 -4.4686 40 1 4.9143 1.3678 -4.3836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243591718.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:32 Heat of formation + Delta-G solvation = -10.884472 kcal Electronic energy + Delta-G solvation = -25328.015274 eV Core-core repulsion = 21496.676041 eV Total energy + Delta-G solvation = -3831.339233 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.89440 -39.14495 -38.10137 -37.75429 -36.57692 -34.87800 -32.45787 -31.76324 -30.75155 -30.25192 -28.27501 -26.59381 -25.55537 -24.92646 -24.11070 -22.78631 -21.60890 -21.06978 -18.24718 -17.93964 -17.86546 -16.97776 -16.63422 -16.58678 -16.38692 -15.80483 -15.19046 -14.72891 -14.58586 -14.41753 -14.02595 -13.75921 -13.61984 -13.17799 -13.12541 -13.06614 -12.69206 -12.55438 -12.52135 -12.22330 -11.79725 -11.52576 -11.44251 -11.32021 -10.97086 -10.92218 -10.75233 -10.52027 -10.33447 -9.94466 -9.59543 -9.36896 -9.02711 -8.50234 -8.29756 -7.08233 -6.57057 -4.13436 0.60296 1.36084 2.17411 2.28318 2.49064 3.08503 3.09421 3.12287 3.44133 3.61975 3.88365 4.14137 4.55047 4.61396 4.68278 4.73042 4.78526 4.96489 5.00265 5.06267 5.13520 5.14779 5.17405 5.22724 5.43848 5.51773 5.58347 5.65243 5.74825 5.76441 5.93321 6.07855 6.20204 6.36584 6.54490 6.82772 6.89205 6.94700 7.12304 7.27440 7.33410 7.67115 7.67603 7.88237 8.38819 8.88153 9.55414 10.59902 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.003023 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.228774 B = 9261.098148 C =10434.578985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.376 6.376 3 C 0.046 3.954 4 C 0.118 3.882 5 N -0.337 5.337 6 N -0.225 5.225 7 C 0.135 3.865 8 C -0.148 4.148 9 C -0.050 4.050 10 C -0.193 4.193 11 C 0.164 3.836 12 O -0.168 6.168 13 C -0.392 4.392 14 H 0.096 0.904 15 C 0.041 3.959 16 N -0.857 5.857 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.277 1.277 20 H -0.268 1.268 21 C -0.239 4.239 22 C -0.026 4.026 23 C -0.054 4.054 24 C -0.201 4.201 25 C 0.471 3.529 26 O -0.556 6.556 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.122 0.878 36 H 0.273 0.727 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 17.371 2.327 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.032 4.032 4 C -0.003 4.003 5 N -0.155 5.155 6 N -0.048 5.048 7 C -0.031 4.031 8 C -0.151 4.151 9 C -0.070 4.070 10 C -0.213 4.213 11 C 0.108 3.892 12 O -0.069 6.069 13 C -0.468 4.468 14 H 0.113 0.887 15 C -0.164 4.164 16 N -0.490 5.490 17 Si 0.767 3.233 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.193 1.193 21 C -0.259 4.259 22 C -0.046 4.046 23 C -0.078 4.078 24 C -0.230 4.230 25 C 0.271 3.729 26 O -0.437 6.437 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.169 0.831 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.660 17.412 3.074 18.286 hybrid contribution -0.196 0.062 -0.035 0.209 sum -4.856 17.475 3.040 18.390 Atomic orbital electron populations 1.22751 0.80986 1.03102 0.99614 1.88044 1.19608 1.26442 1.95341 1.22861 0.92943 0.86014 1.01371 1.21965 0.93623 1.00174 0.84491 1.46428 1.52871 1.02770 1.13476 1.71190 1.12521 0.94323 1.26765 1.20337 0.99587 0.94698 0.88496 1.17504 1.14592 0.86786 0.96235 1.20580 0.97158 0.93314 0.95988 1.20081 1.10313 0.92797 0.98074 1.19530 0.91588 0.84736 0.93330 1.83943 1.75502 1.12996 1.34449 1.21375 1.47525 0.90813 0.87097 0.88702 1.25340 0.96134 0.95584 0.99363 1.70026 1.41746 1.08470 1.28766 0.85750 0.79326 0.78330 0.79922 1.19331 1.20195 1.19311 1.21126 1.10608 0.94363 0.99784 1.20839 0.94124 0.92971 0.96626 1.22515 0.92175 0.93952 0.99206 1.22598 1.06132 0.95635 0.98634 1.18078 0.81225 0.88093 0.85516 1.90926 1.56428 1.12779 1.83591 0.94120 0.94376 0.89271 0.91291 0.92718 0.87359 0.86505 0.86560 0.85994 0.91718 0.85187 0.86157 0.83074 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.70 10.55 -35.23 -0.37 -5.07 16 3 C 0.05 0.47 6.28 37.16 0.23 0.71 16 4 C 0.12 1.29 5.95 -4.04 -0.02 1.27 16 5 N -0.34 -4.72 3.17 -63.31 -0.20 -4.92 16 6 N -0.22 -3.42 9.87 33.47 0.33 -3.09 16 7 C 0.14 2.02 6.82 -82.75 -0.56 1.45 16 8 C -0.15 -2.46 5.88 -104.86 -0.62 -3.07 16 9 C -0.05 -0.80 9.42 -39.28 -0.37 -1.17 16 10 C -0.19 -3.71 9.98 -39.45 -0.39 -4.11 16 11 C 0.16 3.71 6.65 -39.01 -0.26 3.45 16 12 O -0.17 -4.52 9.75 0.31 0.00 -4.52 16 13 C -0.39 -10.44 9.48 30.88 0.29 -10.14 16 14 H 0.10 2.32 5.19 -52.49 -0.27 2.05 16 15 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 16 N -0.86 -24.08 13.67 55.48 0.76 -23.32 16 17 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 18 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 21 C -0.24 -4.94 9.15 -39.45 -0.36 -5.30 16 22 C -0.03 -0.47 9.57 -39.28 -0.38 -0.84 16 23 C -0.05 -0.66 9.49 -39.03 -0.37 -1.03 16 24 C -0.20 -2.47 10.12 -39.11 -0.40 -2.86 16 25 C 0.47 6.90 7.47 -15.18 -0.11 6.79 16 26 O -0.56 -9.19 16.62 4.87 0.08 -9.11 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.13 7.35 -51.93 -0.38 0.75 16 34 H 0.12 1.41 6.21 -52.49 -0.33 1.08 16 35 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 37 H 0.13 2.68 5.62 -52.48 -0.30 2.39 16 38 H 0.12 2.04 7.54 -52.48 -0.40 1.64 16 39 H 0.15 1.37 6.28 -52.49 -0.33 1.04 16 40 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -32.24 348.72 -5.99 -38.22 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -4.52 Total: 4.39 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -2.30 Total: -12.46 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.89 Total: -31.33 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.29 Total: -18.70 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.24 -5.99 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243591718.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.339 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds