Wall clock time and date at job start Tue Mar 31 2020 11:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35621 * 116.99926 * 2 1 4 4 C 1.38769 * 119.50637 * 179.97438 * 3 2 1 5 5 C 1.38774 * 119.18058 * 180.02562 * 4 3 2 6 6 O 1.35658 * 120.87576 * 179.97438 * 5 4 3 7 7 C 1.42896 * 116.99651 * 0.02562 * 6 5 4 8 8 C 1.40649 * 118.25096 * 0.02562 * 5 4 3 9 9 C 1.48086 * 120.52533 * 180.02562 * 8 5 4 10 10 C 1.40178 * 119.52474 * 180.02562 * 9 8 5 11 11 C 1.38283 * 119.56807 * 180.02562 * 10 9 8 12 12 C 1.39138 * 118.64911 * 0.25283 * 11 10 9 13 13 O 1.35538 * 120.47806 * 179.75217 * 12 11 10 14 14 C 1.42902 * 116.99713 * 359.97438 * 13 12 11 15 15 C 1.41381 * 119.04737 * 359.50234 * 12 11 10 16 16 C 1.40971 * 119.83396 * 180.23229 * 15 12 11 17 17 H 1.08008 * 119.99895 * 0.27007 * 16 15 12 18 18 C 1.40001 * 120.00377 * 180.27451 * 16 15 12 19 19 N 1.30780 * 120.00161 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00133 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46860 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47070 * 119.99793 * 20 18 16 23 23 H 1.48500 * 109.47019 * 239.99880 * 20 18 16 24 24 N 1.32227 * 119.52543 * 0.02562 * 9 8 5 25 25 C 1.39161 * 118.94556 * 0.27572 * 8 5 4 26 26 N 1.31814 * 120.70580 * 359.42661 * 25 8 5 27 27 H 1.09003 * 109.46951 * 59.99669 * 1 2 3 28 28 H 1.09000 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47176 * 300.00177 * 1 2 3 30 30 H 1.07998 * 120.40581 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.46836 * 180.02562 * 7 6 5 32 32 H 1.08995 * 109.47347 * 299.99640 * 7 6 5 33 33 H 1.08995 * 109.47217 * 60.00204 * 7 6 5 34 34 H 1.08002 * 120.21659 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.67262 * 179.97438 * 11 10 9 36 36 H 1.09009 * 109.47078 * 180.02562 * 14 13 12 37 37 H 1.09004 * 109.47368 * 300.00264 * 14 13 12 38 38 H 1.08992 * 109.47137 * 60.00588 * 14 13 12 39 39 H 0.96998 * 120.00747 * 179.97438 * 19 18 16 40 40 H 1.08001 * 119.64638 * 179.70277 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 3.4311 1.2691 0.0005 5 6 4.0541 2.5092 0.0011 6 8 5.4070 2.6086 0.0021 7 6 6.1472 1.3863 0.0021 8 6 3.2458 3.6602 0.0016 9 6 3.8575 5.0088 0.0016 10 6 3.0321 6.1418 0.0027 11 6 3.6024 7.4016 0.0022 12 6 4.9898 7.5057 -0.0048 13 8 5.5879 8.7220 -0.0106 14 6 4.7315 9.8660 -0.0097 15 6 5.7669 6.3246 -0.0004 16 6 7.1740 6.4109 -0.0024 17 1 7.6558 7.3776 -0.0028 18 6 7.9469 5.2436 -0.0038 19 7 7.3637 4.0731 -0.0028 20 14 9.8115 5.3580 -0.0071 21 1 10.2198 6.7857 -0.0085 22 1 10.3506 4.6896 1.2044 23 1 10.3462 4.6896 -1.2206 24 7 5.1745 5.1270 0.0006 25 6 1.8622 3.5116 0.0074 26 7 1.3139 2.3129 0.0010 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 4.0179 0.3625 0.0005 31 1 7.2145 1.6079 0.0035 32 1 5.8953 0.8089 0.8916 33 1 5.8966 0.8098 -0.8883 34 1 1.9577 6.0315 0.0031 35 1 2.9833 8.2866 0.0026 36 1 5.3365 10.7728 -0.0152 37 1 4.0984 9.8466 -0.8969 38 1 4.1065 9.8513 0.8831 39 1 7.8991 3.2643 -0.0041 40 1 1.2308 4.3878 0.0128 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245614767.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:57 Heat of formation + Delta-G solvation = -36.507768 kcal Electronic energy + Delta-G solvation = -26550.129458 eV Core-core repulsion = 22717.679115 eV Total energy + Delta-G solvation = -3832.450343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75814 -40.53518 -39.72524 -38.47781 -37.92790 -35.49313 -32.92659 -32.48969 -31.96325 -30.32784 -28.39899 -28.08459 -27.97718 -26.88157 -24.63730 -23.76007 -22.75008 -22.03595 -19.74565 -19.41993 -18.52780 -18.07040 -17.60153 -17.04245 -16.96085 -16.68280 -16.28986 -16.24523 -16.20118 -15.69054 -15.37261 -14.91719 -14.61183 -14.39424 -14.20231 -14.04231 -13.77760 -13.45297 -13.04113 -12.84552 -12.83445 -12.73862 -12.43347 -12.31291 -12.07495 -12.00903 -11.94473 -11.81576 -11.53961 -11.17321 -10.69572 -9.94622 -9.75688 -9.73629 -9.43711 -8.45133 -8.09830 -6.22179 -0.07608 0.42545 1.05849 1.29773 1.45429 1.56610 1.57451 2.10803 2.31311 2.63433 2.74590 2.91605 3.09450 3.38059 3.78654 3.92869 4.03259 4.19633 4.32366 4.34335 4.42409 4.48276 4.50038 4.50468 4.50950 4.52058 4.65066 4.69449 4.75652 4.79745 4.81023 4.93323 5.10936 5.13365 5.40303 5.48540 5.65532 5.78061 6.16144 6.25583 6.41166 6.50093 6.71318 6.89683 6.93574 7.25314 8.24819 8.58272 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013242 B = 0.005092 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.007357 B = 5497.049211 C = 7585.297162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.340 3.660 4 C -0.300 4.300 5 C 0.209 3.791 6 O -0.225 6.225 7 C 0.016 3.984 8 C -0.167 4.167 9 C 0.143 3.857 10 C -0.276 4.276 11 C -0.144 4.144 12 C -0.056 4.056 13 O -0.336 6.336 14 C 0.026 3.974 15 C 0.215 3.785 16 C -0.451 4.451 17 H 0.076 0.924 18 C 0.024 3.976 19 N -0.706 5.706 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.266 1.266 23 H -0.266 1.266 24 N -0.456 5.456 25 C 0.184 3.816 26 N -0.569 5.569 27 H 0.057 0.943 28 H 0.125 0.875 29 H 0.057 0.943 30 H 0.158 0.842 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.275 0.725 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 -5.425 0.020 9.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.223 6.223 3 C 0.162 3.838 4 C -0.321 4.321 5 C 0.151 3.849 6 O -0.130 6.130 7 C -0.080 4.080 8 C -0.172 4.172 9 C 0.001 3.999 10 C -0.299 4.299 11 C -0.168 4.168 12 C -0.104 4.104 13 O -0.249 6.249 14 C -0.069 4.069 15 C 0.087 3.913 16 C -0.482 4.482 17 H 0.094 0.906 18 C -0.199 4.199 19 N -0.329 5.329 20 Si 0.793 3.207 21 H -0.191 1.191 22 H -0.191 1.191 23 H -0.191 1.191 24 N -0.171 5.171 25 C 0.028 3.972 26 N -0.297 5.297 27 H 0.076 0.924 28 H 0.143 0.857 29 H 0.076 0.924 30 H 0.176 0.824 31 H 0.119 0.881 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -7.168 -6.528 0.016 9.695 hybrid contribution 0.699 1.019 -0.003 1.236 sum -6.469 -5.509 0.013 8.497 Atomic orbital electron populations 1.23089 0.75671 1.04647 1.02420 1.86180 1.24559 1.23969 1.87617 1.19656 0.88756 0.85108 0.90284 1.21042 0.93332 0.98088 1.19675 1.19666 0.85922 0.92040 0.87229 1.87150 1.11381 1.30690 1.83791 1.23284 0.97501 0.85979 1.01188 1.19214 0.93719 0.91105 1.13153 1.19824 0.90942 0.91350 0.97754 1.21337 0.99648 0.91637 1.17265 1.21191 0.92540 0.98552 1.04475 1.20460 0.92354 0.85888 1.11747 1.85881 1.36301 1.12561 1.90206 1.23083 0.95794 0.87177 1.00887 1.18605 0.94479 0.84918 0.93311 1.19616 0.90213 0.94347 1.44072 0.90577 1.26764 1.04527 0.94731 0.93922 1.70510 1.37095 0.98041 1.27228 0.85325 0.77407 0.79299 0.78694 1.19094 1.19072 1.19090 1.69016 1.07953 1.22619 1.17518 1.22553 0.90243 0.94237 0.90141 1.67355 1.39934 0.98294 1.24145 0.92448 0.85669 0.92446 0.82406 0.88143 0.92142 0.92140 0.84906 0.84566 0.87064 0.93094 0.93087 0.91297 0.79690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.37 113.37 1.18 1.91 16 2 O -0.32 -8.96 10.47 -89.33 -0.94 -9.89 16 3 C 0.34 11.35 7.48 84.73 0.63 11.98 16 4 C -0.30 -10.37 9.03 22.53 0.20 -10.16 16 5 C 0.21 8.61 6.73 22.99 0.15 8.77 16 6 O -0.23 -9.78 6.06 -89.74 -0.54 -10.32 16 7 C 0.02 0.51 9.44 113.37 1.07 1.58 16 8 C -0.17 -7.13 5.91 -19.85 -0.12 -7.25 16 9 C 0.14 7.01 6.74 42.17 0.28 7.29 16 10 C -0.28 -11.96 9.47 22.75 0.22 -11.74 16 11 C -0.14 -6.28 9.11 22.50 0.20 -6.08 16 12 C -0.06 -2.84 6.74 23.26 0.16 -2.68 16 13 O -0.34 -15.49 9.61 -88.43 -0.85 -16.34 16 14 C 0.03 0.82 9.83 113.37 1.11 1.94 16 15 C 0.21 12.16 6.56 40.32 0.26 12.42 16 16 C -0.45 -25.20 8.94 23.37 0.21 -24.99 16 17 H 0.08 4.24 7.31 -2.91 -0.02 4.22 16 18 C 0.02 1.23 5.50 85.28 0.47 1.70 16 19 N -0.71 -35.57 8.60 21.83 0.19 -35.38 16 20 Si 0.97 38.41 29.56 68.60 2.03 40.44 16 21 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 22 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 24 N -0.46 -25.16 6.03 -177.90 -1.07 -26.23 16 25 C 0.18 6.49 10.58 84.92 0.90 7.39 16 26 N -0.57 -19.19 9.18 -308.13 -2.83 -22.01 16 27 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 28 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.06 1.18 8.10 -2.38 -0.02 1.16 16 30 H 0.16 4.65 6.45 -2.91 -0.02 4.63 16 31 H 0.10 3.13 6.11 -2.38 -0.01 3.12 16 32 H 0.06 1.68 7.71 -2.39 -0.02 1.66 16 33 H 0.06 1.68 7.71 -2.39 -0.02 1.66 16 34 H 0.13 4.66 6.18 -2.91 -0.02 4.64 16 35 H 0.14 4.87 6.43 -2.91 -0.02 4.85 16 36 H 0.11 2.83 8.14 -2.38 -0.02 2.81 16 37 H 0.05 1.49 7.69 -2.38 -0.02 1.47 16 38 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 39 H 0.27 12.14 6.12 -92.71 -0.57 11.57 16 40 H 0.19 5.50 6.17 -2.91 -0.02 5.48 16 Total: -1.00 -68.97 331.30 4.22 -64.75 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 1.29 Total: 22.92 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 6.94 Total: -7.92 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -3.71 Total: -83.63 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.33 Total: -36.56 kcal Atomic # 14 Polarization: 38.41 SS G_CDS: 2.03 Total: 40.44 kcal Total: -68.97 4.22 -64.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245614767.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.244 kcal (2) G-P(sol) polarization free energy of solvation -68.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds