Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00073 * 2 1 4 4 C 1.52998 * 109.47177 * 269.99757 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 F 1.39892 * 109.47237 * 60.00093 * 5 4 3 7 7 F 1.39909 * 109.47060 * 180.02562 * 5 4 3 8 8 F 1.39903 * 109.46949 * 299.99746 * 5 4 3 9 9 C 1.34780 * 120.00053 * 180.02562 * 2 1 3 10 10 O 1.21589 * 120.00215 * 180.02562 * 9 2 1 11 11 N 1.34776 * 119.99764 * 359.97438 * 9 2 1 12 12 C 1.39956 * 120.00073 * 184.30128 * 11 9 2 13 13 C 1.39289 * 119.95018 * 144.80286 * 12 11 9 14 14 C 1.38492 * 120.43132 * 179.97438 * 13 12 11 15 15 C 1.37674 * 120.32130 * 0.29604 * 14 13 12 16 16 C 1.40748 * 119.88496 * 359.47607 * 15 14 13 17 17 C 1.41406 * 120.21662 * 180.27066 * 16 15 14 18 18 H 1.07993 * 120.00169 * 214.97285 * 17 16 15 19 19 C 1.39932 * 119.99625 * 34.96317 * 17 16 15 20 20 N 1.30832 * 120.00069 * 355.51582 * 19 17 16 21 21 Si 1.86803 * 120.00031 * 175.51672 * 19 17 16 22 22 H 1.48497 * 109.46914 * 59.99897 * 21 19 17 23 23 H 1.48497 * 109.47132 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46815 * 300.00185 * 21 19 17 25 25 C 1.38238 * 119.94638 * 324.82677 * 12 11 9 26 26 H 1.09001 * 109.46968 * 269.99623 * 1 2 3 27 27 H 1.08997 * 109.46991 * 30.00213 * 1 2 3 28 28 H 1.09001 * 109.47238 * 150.00103 * 1 2 3 29 29 H 1.08994 * 109.46725 * 30.00128 * 3 2 1 30 30 H 1.09001 * 109.46636 * 150.00187 * 3 2 1 31 31 H 1.09000 * 109.47260 * 300.00083 * 4 3 2 32 32 H 1.08999 * 109.46795 * 60.00132 * 4 3 2 33 33 H 0.97003 * 120.00076 * 4.30777 * 11 9 2 34 34 H 1.08004 * 119.78152 * 359.97438 * 13 12 11 35 35 H 1.07998 * 119.83613 * 180.02562 * 14 13 12 36 36 H 1.07994 * 120.06371 * 179.72755 * 15 14 13 37 37 H 0.97002 * 119.99727 * 179.97438 * 20 19 17 38 38 H 1.08004 * 120.15973 * 359.97110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0350 -1.4424 6 9 4.4404 2.8672 -0.7831 7 9 3.4508 3.4392 -2.7615 8 9 2.4624 4.0103 -0.7828 9 6 2.1389 -1.1672 -0.0005 10 8 3.3548 -1.1673 -0.0001 11 7 1.4649 -2.3344 -0.0005 12 6 2.1618 -3.5448 0.0898 13 6 1.6101 -4.6140 0.7917 14 6 2.2907 -5.8164 0.8870 15 6 3.5240 -5.9659 0.2935 16 6 4.0918 -4.8959 -0.4231 17 6 5.3554 -5.0436 -1.0402 18 1 6.0358 -4.2061 -1.0850 19 6 5.7244 -6.2752 -1.5928 20 7 4.9384 -7.3128 -1.4617 21 14 7.3393 -6.4377 -2.5175 22 1 8.4653 -6.0997 -1.6103 23 1 7.4944 -7.8331 -3.0013 24 1 7.3416 -5.5093 -3.6765 25 6 3.3967 -3.6771 -0.5172 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5138 31 1 3.0416 0.9507 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 0.4970 -2.3355 -0.0632 34 1 0.6453 -4.5047 1.2646 35 1 1.8539 -6.6393 1.4332 36 1 4.0530 -6.9040 0.3742 37 1 5.1940 -8.1664 -1.8450 38 1 3.8252 -2.8486 -1.0617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261287651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = -155.793473 kcal Electronic energy + Delta-G solvation = -26085.129150 eV Core-core repulsion = 21705.649451 eV Total energy + Delta-G solvation = -4379.479699 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.26125 -47.77784 -47.71198 -40.28574 -37.61542 -35.88197 -34.55337 -33.22488 -32.20998 -29.76595 -28.14795 -27.31934 -25.45191 -25.17046 -22.77445 -21.26895 -20.81185 -19.47747 -18.73669 -18.58868 -18.08888 -17.64627 -17.37172 -15.93546 -15.49900 -15.29550 -14.98684 -14.70234 -14.59202 -14.37925 -14.22691 -14.12699 -13.88429 -13.86763 -13.57273 -13.50848 -12.99617 -12.83117 -12.71765 -12.58614 -12.16844 -11.95814 -11.63371 -11.46075 -11.15501 -11.08802 -10.91656 -10.42037 -10.23220 -9.71104 -9.42742 -9.20832 -8.89198 -8.82538 -7.34420 -6.87900 -6.53210 -4.33648 2.37387 2.75440 2.83278 2.94623 3.13298 3.17107 3.24519 3.53044 3.70403 3.87580 3.88457 4.03464 4.14685 4.66941 4.70044 4.76094 4.83708 5.04126 5.19719 5.38538 5.43368 5.64089 5.69072 6.22053 6.27193 6.37631 6.69642 6.76310 7.06318 7.15129 7.21621 7.37087 7.68102 7.78510 8.00424 8.17066 8.26526 8.36312 8.72983 8.86872 9.02097 9.03275 10.36125 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003428 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.261381 B = 8166.449315 C = 9817.578735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.636 5.636 3 C 0.135 3.865 4 C -0.187 4.187 5 C 0.458 3.542 6 F -0.178 7.178 7 F -0.185 7.185 8 F -0.187 7.187 9 C 0.698 3.302 10 O -0.558 6.558 11 N -0.677 5.677 12 C 0.154 3.846 13 C -0.250 4.250 14 C -0.099 4.099 15 C -0.160 4.160 16 C 0.114 3.886 17 C -0.461 4.461 18 H 0.076 0.924 19 C 0.071 3.929 20 N -0.814 5.814 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.267 1.267 25 C -0.198 4.198 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.394 0.606 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.277 0.723 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 15.665 0.421 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.375 5.375 3 C 0.011 3.989 4 C -0.227 4.227 5 C 0.403 3.597 6 F -0.160 7.160 7 F -0.167 7.167 8 F -0.168 7.168 9 C 0.400 3.600 10 O -0.433 6.433 11 N -0.325 5.325 12 C 0.062 3.938 13 C -0.272 4.272 14 C -0.118 4.118 15 C -0.180 4.180 16 C 0.111 3.889 17 C -0.492 4.492 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.442 5.442 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.205 1.205 24 H -0.192 1.192 25 C -0.219 4.219 26 H 0.076 0.924 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.230 0.770 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.146 0.854 37 H 0.088 0.912 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.907 15.453 0.376 17.840 hybrid contribution 0.066 0.113 -0.621 0.635 sum -8.841 15.566 -0.245 17.904 Atomic orbital electron populations 1.21756 0.79768 1.03004 1.02003 1.46959 1.06244 1.04512 1.79813 1.21133 0.99569 0.84880 0.93329 1.23363 1.02860 0.93336 1.03168 1.20449 0.78501 0.87346 0.73416 1.93224 1.46150 1.95539 1.81048 1.93195 1.94901 1.92105 1.36449 1.93172 1.75953 1.66429 1.81286 1.15948 0.85540 0.80218 0.78296 1.90989 1.11083 1.85405 1.55849 1.42690 1.09410 1.03986 1.76396 1.17278 0.94128 0.83071 0.99325 1.20092 1.01989 0.95070 1.10012 1.20526 0.95921 0.95242 1.00153 1.21632 0.95817 1.01196 0.99342 1.17562 0.92658 0.90061 0.88615 1.19495 1.00614 0.96449 1.32655 0.90618 1.25845 0.97918 0.95044 0.95535 1.69756 1.35892 1.01176 1.37366 0.86269 0.81823 0.77737 0.80223 1.19034 1.20484 1.19157 1.21295 0.95136 0.99758 1.05738 0.92358 0.90833 0.91269 0.89404 0.88218 0.86435 0.87369 0.77020 0.89344 0.88957 0.85354 0.91218 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.24 59.84 0.61 1.21 16 2 N -0.64 -7.64 2.87 -187.36 -0.54 -8.18 16 3 C 0.14 1.42 5.16 -4.04 -0.02 1.40 16 4 C -0.19 -1.79 5.58 -26.73 -0.15 -1.94 16 5 C 0.46 4.68 3.16 37.16 0.12 4.80 16 6 F -0.18 -2.18 16.80 2.25 0.04 -2.15 16 7 F -0.19 -2.04 17.32 2.25 0.04 -2.00 16 8 F -0.19 -1.81 16.80 2.25 0.04 -1.77 16 9 C 0.70 12.20 8.12 -86.92 -0.71 11.49 16 10 O -0.56 -12.31 13.36 5.29 0.07 -12.24 16 11 N -0.68 -11.82 5.21 -14.27 -0.07 -11.89 16 12 C 0.15 3.44 6.29 -83.76 -0.53 2.92 16 13 C -0.25 -5.41 9.97 -39.10 -0.39 -5.80 16 14 C -0.10 -2.30 10.02 -39.69 -0.40 -2.70 16 15 C -0.16 -4.20 8.67 -38.84 -0.34 -4.54 16 16 C 0.11 3.14 5.55 -106.85 -0.59 2.55 16 17 C -0.46 -12.80 9.04 -37.74 -0.34 -13.14 16 18 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 19 C 0.07 1.85 5.42 -17.34 -0.09 1.75 16 20 N -0.81 -21.50 10.61 55.55 0.59 -20.91 16 21 Si 0.91 19.61 29.56 -169.99 -5.03 14.58 16 22 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 C -0.20 -5.11 8.43 -38.68 -0.33 -5.44 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 28 H 0.07 0.49 6.30 -51.93 -0.33 0.17 16 29 H 0.09 0.67 7.73 -51.93 -0.40 0.27 16 30 H 0.10 1.28 7.08 -51.93 -0.37 0.91 16 31 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.39 5.29 6.52 -40.82 -0.27 5.03 16 34 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.13 3.49 6.15 -52.49 -0.32 3.17 16 37 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 38 H 0.11 3.04 6.23 -52.48 -0.33 2.71 16 LS Contribution 334.27 15.07 5.04 5.04 Total: -1.00 -31.64 334.27 -7.07 -38.71 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -4.09 Total: 8.25 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -3.15 Total: -7.44 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: -0.02 Total: -40.98 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.07 Total: -12.24 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.64 -7.07 -38.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261287651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.083 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds