Wall clock time and date at job start Tue Mar 31 2020 11:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46500 * 120.00073 * 2 1 4 4 C 1.52998 * 109.47177 * 269.99757 * 3 2 1 5 5 C 1.52997 * 109.47058 * 180.02562 * 4 3 2 6 6 F 1.39892 * 109.47237 * 60.00093 * 5 4 3 7 7 F 1.39909 * 109.47060 * 180.02562 * 5 4 3 8 8 F 1.39903 * 109.46949 * 299.99746 * 5 4 3 9 9 C 1.34780 * 120.00053 * 180.02562 * 2 1 3 10 10 O 1.21589 * 120.00215 * 180.02562 * 9 2 1 11 11 N 1.34776 * 119.99764 * 359.97438 * 9 2 1 12 12 C 1.39956 * 120.00073 * 184.30128 * 11 9 2 13 13 C 1.39289 * 119.95018 * 144.80286 * 12 11 9 14 14 C 1.38492 * 120.43132 * 179.97438 * 13 12 11 15 15 C 1.37674 * 120.32130 * 0.29604 * 14 13 12 16 16 C 1.40748 * 119.88496 * 359.47607 * 15 14 13 17 17 C 1.41406 * 120.21662 * 180.27066 * 16 15 14 18 18 H 1.07993 * 120.00169 * 214.97285 * 17 16 15 19 19 C 1.39932 * 119.99625 * 34.96317 * 17 16 15 20 20 N 1.30832 * 120.00069 * 355.51582 * 19 17 16 21 21 Si 1.86803 * 120.00031 * 175.51672 * 19 17 16 22 22 H 1.48497 * 109.46914 * 59.99897 * 21 19 17 23 23 H 1.48497 * 109.47132 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46815 * 300.00185 * 21 19 17 25 25 C 1.38238 * 119.94638 * 324.82677 * 12 11 9 26 26 H 1.09001 * 109.46968 * 269.99623 * 1 2 3 27 27 H 1.08997 * 109.46991 * 30.00213 * 1 2 3 28 28 H 1.09001 * 109.47238 * 150.00103 * 1 2 3 29 29 H 1.08994 * 109.46725 * 30.00128 * 3 2 1 30 30 H 1.09001 * 109.46636 * 150.00187 * 3 2 1 31 31 H 1.09000 * 109.47260 * 300.00083 * 4 3 2 32 32 H 1.08999 * 109.46795 * 60.00132 * 4 3 2 33 33 H 0.97003 * 120.00076 * 4.30777 * 11 9 2 34 34 H 1.08004 * 119.78152 * 359.97438 * 13 12 11 35 35 H 1.07998 * 119.83613 * 180.02562 * 14 13 12 36 36 H 1.07994 * 120.06371 * 179.72755 * 15 14 13 37 37 H 0.97002 * 119.99727 * 179.97438 * 20 19 17 38 38 H 1.08004 * 120.15973 * 359.97110 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 3.2181 3.0350 -1.4424 6 9 4.4404 2.8672 -0.7831 7 9 3.4508 3.4392 -2.7615 8 9 2.4624 4.0103 -0.7828 9 6 2.1389 -1.1672 -0.0005 10 8 3.3548 -1.1673 -0.0001 11 7 1.4649 -2.3344 -0.0005 12 6 2.1618 -3.5448 0.0898 13 6 1.6101 -4.6140 0.7917 14 6 2.2907 -5.8164 0.8870 15 6 3.5240 -5.9659 0.2935 16 6 4.0918 -4.8959 -0.4231 17 6 5.3554 -5.0436 -1.0402 18 1 6.0358 -4.2061 -1.0850 19 6 5.7244 -6.2752 -1.5928 20 7 4.9384 -7.3128 -1.4617 21 14 7.3393 -6.4377 -2.5175 22 1 8.4653 -6.0997 -1.6103 23 1 7.4944 -7.8331 -3.0013 24 1 7.3416 -5.5093 -3.6765 25 6 3.3967 -3.6771 -0.5172 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1499 1.1383 0.5138 31 1 3.0416 0.9507 -1.9563 32 1 1.5001 1.8407 -1.9563 33 1 0.4970 -2.3355 -0.0632 34 1 0.6453 -4.5047 1.2646 35 1 1.8539 -6.6393 1.4332 36 1 4.0530 -6.9040 0.3742 37 1 5.1940 -8.1664 -1.8450 38 1 3.8252 -2.8486 -1.0617 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261287651.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:39:07 Heat of formation + Delta-G solvation = -174.556785 kcal Electronic energy + Delta-G solvation = -26085.942789 eV Core-core repulsion = 21705.649451 eV Total energy + Delta-G solvation = -4380.293338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.12381 -48.63289 -48.59565 -41.64010 -39.29413 -37.12138 -36.20606 -34.91744 -33.27834 -31.69583 -29.83879 -28.07194 -27.23690 -26.41616 -23.81014 -22.90466 -22.53029 -20.87085 -19.82734 -19.56419 -19.33522 -18.83794 -18.50907 -17.48906 -17.10773 -16.61644 -16.39496 -16.01539 -15.86625 -15.49923 -15.26114 -15.04601 -14.95006 -14.78207 -14.74715 -14.67128 -14.48298 -14.29854 -13.92894 -13.55877 -13.43198 -13.27296 -12.94880 -12.87355 -12.83167 -12.78708 -12.28466 -12.14212 -11.98812 -11.54516 -11.20748 -10.99394 -10.67199 -9.84759 -9.28062 -8.69152 -8.44593 -6.39298 0.94622 1.03486 1.36698 1.42299 1.48082 1.51525 1.85033 2.13498 2.24111 2.76370 2.83026 2.98044 3.05999 3.09335 3.70949 3.85372 3.88490 4.24767 4.29995 4.49725 4.53682 4.63431 4.64725 4.82927 4.90173 5.06474 5.15385 5.16658 5.18152 5.37359 5.46553 5.69417 5.85555 6.00642 6.11498 6.19801 6.40775 6.74124 6.93175 6.99661 7.04734 7.54689 8.43723 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003428 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.261381 B = 8166.449315 C = 9817.578735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.623 5.623 3 C 0.132 3.868 4 C -0.178 4.178 5 C 0.461 3.539 6 F -0.194 7.194 7 F -0.189 7.189 8 F -0.179 7.179 9 C 0.691 3.309 10 O -0.614 6.614 11 N -0.667 5.667 12 C 0.164 3.836 13 C -0.235 4.235 14 C -0.098 4.098 15 C -0.186 4.186 16 C 0.082 3.918 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.033 3.967 20 N -0.839 5.839 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.261 1.261 24 H -0.267 1.267 25 C -0.223 4.223 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.142 0.858 33 H 0.417 0.583 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.285 0.715 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.587 16.642 0.671 20.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.360 5.360 3 C 0.008 3.992 4 C -0.218 4.218 5 C 0.407 3.593 6 F -0.176 7.176 7 F -0.171 7.171 8 F -0.160 7.160 9 C 0.393 3.607 10 O -0.492 6.492 11 N -0.317 5.317 12 C 0.070 3.930 13 C -0.257 4.257 14 C -0.116 4.116 15 C -0.207 4.207 16 C 0.079 3.921 17 C -0.537 4.537 18 H 0.077 0.923 19 C -0.179 4.179 20 N -0.467 5.467 21 Si 0.804 3.196 22 H -0.187 1.187 23 H -0.185 1.185 24 H -0.191 1.191 25 C -0.245 4.245 26 H 0.094 0.906 27 H 0.126 0.874 28 H 0.094 0.906 29 H 0.145 0.855 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.153 0.847 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.779 16.480 0.635 20.267 hybrid contribution 0.748 -0.040 -0.617 0.971 sum -11.030 16.440 0.017 19.797 Atomic orbital electron populations 1.22154 0.76300 1.05119 1.03815 1.46952 1.08203 1.02945 1.77888 1.21291 0.98986 0.84944 0.93991 1.23278 1.03826 0.92054 1.02610 1.20493 0.78011 0.87751 0.73075 1.93199 1.47347 1.95650 1.81378 1.93187 1.94930 1.92176 1.36794 1.93185 1.75569 1.66188 1.81095 1.16224 0.85045 0.81465 0.77956 1.90968 1.13848 1.86381 1.58040 1.42435 1.10319 1.02606 1.76309 1.17321 0.93037 0.85093 0.97572 1.20531 1.03186 0.93717 1.08238 1.20893 0.94680 0.96925 0.99137 1.21559 0.97594 1.00351 1.01156 1.17874 0.93320 0.91334 0.89542 1.19653 1.01491 0.97214 1.35350 0.92279 1.26629 1.01381 0.94108 0.95789 1.69815 1.37396 1.01620 1.37849 0.85243 0.77262 0.78410 0.78643 1.18708 1.18538 1.19148 1.21237 0.97113 0.98706 1.07439 0.90650 0.87383 0.90610 0.85499 0.91286 0.88962 0.84038 0.74311 0.84747 0.85752 0.87111 0.90471 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 10.24 127.77 1.31 2.02 16 2 N -0.62 -13.51 2.87 -864.93 -2.49 -16.00 16 3 C 0.13 2.53 5.16 86.38 0.45 2.97 16 4 C -0.18 -3.14 5.58 30.59 0.17 -2.97 16 5 C 0.46 8.96 3.16 71.98 0.23 9.19 16 6 F -0.19 -4.83 16.80 44.97 0.76 -4.07 16 7 F -0.19 -4.01 17.32 44.97 0.78 -3.23 16 8 F -0.18 -3.05 16.80 44.97 0.76 -2.30 16 9 C 0.69 23.78 8.12 179.05 1.45 25.24 16 10 O -0.61 -28.22 13.36 -4.00 -0.05 -28.27 16 11 N -0.67 -22.15 5.21 -317.32 -1.65 -23.80 16 12 C 0.16 7.23 6.29 38.10 0.24 7.47 16 13 C -0.24 -9.59 9.97 22.58 0.23 -9.37 16 14 C -0.10 -4.40 10.02 22.20 0.22 -4.18 16 15 C -0.19 -10.09 8.67 22.75 0.20 -9.90 16 16 C 0.08 4.75 5.55 -21.30 -0.12 4.63 16 17 C -0.51 -29.94 9.04 23.46 0.21 -29.72 16 18 H 0.06 3.52 7.85 -2.91 -0.02 3.50 16 19 C 0.03 1.77 5.42 85.25 0.46 2.24 16 20 N -0.84 -45.70 10.61 21.82 0.23 -45.46 16 21 Si 0.98 41.44 29.56 68.60 2.03 43.47 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 25 C -0.22 -12.07 8.43 22.85 0.19 -11.87 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.11 0.49 8.07 -2.39 -0.02 0.47 16 28 H 0.08 0.74 6.30 -2.39 -0.02 0.72 16 29 H 0.13 1.47 7.73 -2.39 -0.02 1.45 16 30 H 0.07 1.79 7.08 -2.39 -0.02 1.78 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.14 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.42 9.76 6.52 -92.71 -0.60 9.16 16 34 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.11 6.29 6.15 -2.91 -0.02 6.27 16 37 H 0.28 14.04 8.30 -92.71 -0.77 13.27 16 38 H 0.09 5.23 6.23 -2.91 -0.02 5.21 16 Total: -1.00 -74.95 334.27 6.11 -68.84 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.51 Total: 25.07 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.24 Total: -14.24 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -3.91 Total: -85.26 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.05 Total: -28.27 kcal Atomic # 9 Polarization: -11.89 SS G_CDS: 2.29 Total: -9.60 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -74.95 6.11 -68.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261287651.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.713 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds