Wall clock time and date at job start Tue Mar 31 2020 10:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46565 * 2 1 4 4 C 1.50703 * 109.46776 * 240.00671 * 2 1 3 5 5 H 1.08007 * 119.99769 * 274.62768 * 4 2 1 6 6 C 1.37875 * 120.00043 * 94.63271 * 4 2 1 7 7 N 1.31516 * 119.99589 * 184.34501 * 6 4 2 8 8 Si 1.86792 * 120.00078 * 4.34293 * 6 4 2 9 9 H 1.48504 * 109.47131 * 94.23081 * 8 6 4 10 10 H 1.48498 * 109.47149 * 214.22933 * 8 6 4 11 11 H 1.48498 * 109.47328 * 334.23202 * 8 6 4 12 12 N 1.46497 * 109.46994 * 120.00642 * 2 1 3 13 13 C 1.34780 * 119.99536 * 274.99718 * 12 2 1 14 14 O 1.21716 * 120.00083 * 0.02562 * 13 12 2 15 15 C 1.46260 * 119.99524 * 180.02562 * 13 12 2 16 16 C 1.34976 * 119.99546 * 173.40634 * 15 13 12 17 17 C 1.47002 * 120.00501 * 348.55632 * 16 15 13 18 18 C 1.39971 * 120.07960 * 312.07745 * 17 16 15 19 19 C 1.37800 * 120.08600 * 179.97438 * 18 17 16 20 20 C 1.38733 * 120.10501 * 0.07845 * 19 18 17 21 21 C 1.39720 * 120.13767 * 359.94725 * 20 19 18 22 22 C 1.38044 * 120.14808 * 0.02562 * 21 20 19 23 23 N 1.40250 * 119.17934 * 179.72033 * 21 20 19 24 24 C 1.35087 * 118.97848 * 16.03331 * 23 21 20 25 25 O 1.21295 * 120.13836 * 181.40663 * 24 23 21 26 26 C 1.50747 * 119.72607 * 1.13706 * 24 23 21 27 27 O 1.35883 * 120.48973 * 179.97438 * 20 19 18 28 28 H 1.08998 * 109.47310 * 295.06624 * 1 2 3 29 29 H 1.09002 * 109.47566 * 55.07302 * 1 2 3 30 30 H 1.09009 * 109.46923 * 175.07059 * 1 2 3 31 31 H 0.97001 * 119.99894 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00241 * 94.99946 * 12 2 1 33 33 H 1.07994 * 120.00225 * 353.41112 * 15 13 12 34 34 H 1.08006 * 119.99650 * 168.55720 * 16 15 13 35 35 H 1.08001 * 119.95904 * 359.96465 * 18 17 16 36 36 H 1.07998 * 119.94629 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.15815 * 180.02562 * 22 21 20 38 38 H 0.96998 * 120.50617 * 195.80131 * 23 21 20 39 39 H 1.08995 * 109.44776 * 88.91132 * 26 24 23 40 40 H 1.09001 * 109.44476 * 208.84546 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1411 -1.7849 -1.2272 6 6 2.3530 0.0116 -2.3606 7 7 2.7094 -0.6139 -3.4613 8 14 2.2812 1.8779 -2.3283 9 1 3.6271 2.4196 -2.0114 10 1 1.8458 2.3795 -3.6565 11 1 1.3137 2.3182 -1.2914 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6351 -0.7079 3.5511 16 6 2.8907 -0.0086 4.6770 17 6 2.9236 1.4605 4.6384 18 6 3.6518 2.1200 3.6414 19 6 3.6823 3.4972 3.6048 20 6 2.9928 4.2340 4.5568 21 6 2.2641 3.5828 5.5554 22 6 2.2276 2.2035 5.5993 23 7 1.5793 4.3474 6.5111 24 6 1.3642 5.6588 6.2682 25 8 0.7967 6.3455 7.0914 26 6 1.8376 6.2665 4.9724 27 8 3.0179 5.5923 4.5284 28 1 -0.3634 0.4354 0.9309 29 1 -0.3634 0.5884 -0.8426 30 1 -0.3633 -1.0240 -0.0883 31 1 2.9353 -0.1060 -4.2562 32 1 2.2490 -1.6319 1.1525 33 1 2.7910 -1.7763 3.5319 34 1 3.0711 -0.5286 5.6063 35 1 4.1907 1.5488 2.9000 36 1 4.2453 4.0037 2.8348 37 1 1.6640 1.7000 6.3708 38 1 1.2622 3.9401 7.3323 39 1 1.0571 6.1666 4.2182 40 1 2.0600 7.3223 5.1267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338814871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:38 Heat of formation + Delta-G solvation = -52.712866 kcal Electronic energy + Delta-G solvation = -25884.806240 eV Core-core repulsion = 22051.653191 eV Total energy + Delta-G solvation = -3833.153048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49378 -39.54066 -38.74138 -37.57144 -35.54707 -34.80900 -33.23361 -32.38574 -30.45690 -29.95321 -29.29348 -27.57572 -25.35849 -24.39001 -22.91465 -22.67676 -20.53957 -19.79189 -19.21551 -18.93566 -17.91331 -17.37540 -16.86295 -16.40779 -16.09039 -15.57700 -15.28757 -14.90469 -14.69162 -14.42166 -13.99394 -13.94957 -13.73484 -13.68206 -13.24193 -13.01420 -12.73187 -12.58241 -12.36935 -11.90937 -11.51871 -11.50260 -11.30705 -11.14113 -10.95647 -10.81591 -10.58567 -10.28369 -9.88437 -9.50977 -9.22134 -9.18588 -8.74454 -8.61290 -8.05247 -7.65027 -6.27154 -4.31049 0.72959 1.18283 1.68864 2.19972 2.59034 3.14059 3.21411 3.31114 3.38068 3.75319 3.80043 3.83293 4.04889 4.28654 4.50797 4.71565 4.72654 4.89514 5.04802 5.15776 5.19807 5.31866 5.40271 5.51297 5.69878 5.81597 6.03993 6.17369 6.23165 6.32994 6.36361 6.49038 6.59961 6.61795 6.64775 6.65202 6.91739 7.16543 7.20161 7.35074 7.52357 7.55683 8.10894 8.54386 8.73573 8.95581 9.34903 10.84629 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.003687 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.762887 B = 7591.588459 C = 8524.675202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.229 3.771 3 H 0.054 0.946 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.081 3.919 7 N -0.889 5.889 8 Si 0.872 3.128 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.696 5.696 13 C 0.519 3.481 14 O -0.547 6.547 15 C -0.186 4.186 16 C -0.051 4.051 17 C -0.041 4.041 18 C -0.030 4.030 19 C -0.112 4.112 20 C 0.081 3.919 21 C 0.075 3.925 22 C -0.106 4.106 23 N -0.657 5.657 24 C 0.492 3.508 25 O -0.522 6.522 26 C 0.050 3.950 27 O -0.304 6.304 28 H 0.028 0.972 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.268 0.732 32 H 0.393 0.607 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.413 0.587 39 H 0.100 0.900 40 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.418 4.715 18.161 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.072 0.928 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.698 3.302 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.343 5.343 13 C 0.306 3.694 14 O -0.428 6.428 15 C -0.207 4.207 16 C -0.071 4.071 17 C -0.041 4.041 18 C -0.049 4.049 19 C -0.131 4.131 20 C 0.035 3.965 21 C -0.019 4.019 22 C -0.127 4.127 23 N -0.304 5.304 24 C 0.279 3.721 25 O -0.398 6.398 26 C -0.028 4.028 27 O -0.218 6.218 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.226 0.774 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.147 0.853 36 H 0.155 0.845 37 H 0.147 0.853 38 H 0.252 0.748 39 H 0.117 0.883 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.129 6.208 18.182 19.245 hybrid contribution -0.387 -0.009 0.157 0.418 sum 0.742 6.198 18.339 19.372 Atomic orbital electron populations 1.22212 0.98731 1.00449 0.99152 1.19188 0.90829 0.94563 0.82742 0.92820 1.21023 1.45287 0.95664 0.94942 0.90398 1.24942 0.93620 0.98634 0.95166 1.69887 1.44672 1.36174 1.01800 0.86905 0.79511 0.85907 0.77833 1.19961 1.21081 1.18089 1.46644 1.63906 1.13890 1.09830 1.18470 0.79690 0.87238 0.83973 1.90834 1.51788 1.15301 1.84894 1.23337 1.02523 1.00684 0.94188 1.22163 0.95474 0.91955 0.97477 1.18606 0.97888 0.92807 0.94848 1.20992 0.96206 0.92908 0.94775 1.20348 1.02209 0.93307 0.97204 1.18679 1.00288 0.81944 0.95595 1.17735 0.99915 0.91597 0.92679 1.20516 1.01427 0.90377 1.00352 1.43660 1.55834 1.09525 1.21349 1.21559 0.78708 0.81834 0.89979 1.90794 1.41599 1.60163 1.47261 1.23154 0.88752 0.98339 0.92567 1.86205 1.36174 1.16139 1.83285 0.95262 0.93083 0.93535 0.92250 0.77364 0.85060 0.84816 0.85333 0.84536 0.85258 0.74798 0.88265 0.83921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.47 37.16 0.35 -2.77 16 2 C 0.23 5.20 2.17 -69.08 -0.15 5.05 16 3 H 0.05 1.33 4.56 -51.93 -0.24 1.09 16 4 C -0.53 -13.80 9.05 -34.44 -0.31 -14.11 16 5 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 6 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 7 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 8 Si 0.87 20.88 27.25 -169.99 -4.63 16.25 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.26 -6.08 6.42 56.52 0.36 -5.71 16 12 N -0.70 -12.97 5.06 -56.38 -0.29 -13.26 16 13 C 0.52 8.94 6.91 -13.04 -0.09 8.85 16 14 O -0.55 -10.94 12.14 5.17 0.06 -10.88 16 15 C -0.19 -2.28 9.92 -37.52 -0.37 -2.65 16 16 C -0.05 -0.54 9.77 -37.19 -0.36 -0.91 16 17 C -0.04 -0.52 4.34 -105.04 -0.46 -0.97 16 18 C -0.03 -0.42 6.77 -39.09 -0.26 -0.69 16 19 C -0.11 -1.56 9.98 -39.56 -0.39 -1.95 16 20 C 0.08 1.10 6.45 -38.85 -0.25 0.85 16 21 C 0.08 0.93 6.53 -83.52 -0.55 0.39 16 22 C -0.11 -1.23 9.69 -38.99 -0.38 -1.61 16 23 N -0.66 -7.32 5.47 -9.69 -0.05 -7.37 16 24 C 0.49 6.00 7.94 -10.82 -0.09 5.91 16 25 O -0.52 -7.65 17.95 5.54 0.10 -7.55 16 26 C 0.05 0.52 7.16 36.03 0.26 0.78 16 27 O -0.30 -3.86 10.44 -19.37 -0.20 -4.06 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 1.10 8.12 -51.93 -0.42 0.68 16 30 H 0.05 0.94 8.14 -51.92 -0.42 0.51 16 31 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.39 6.43 8.57 -40.82 -0.35 6.08 16 33 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 34 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 35 H 0.13 1.86 7.44 -52.49 -0.39 1.47 16 36 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 38 H 0.41 3.70 8.89 -40.82 -0.36 3.34 16 39 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 343.28 15.07 5.17 5.17 Total: -1.00 -33.00 343.28 -6.96 -39.96 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.74 Total: 8.35 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -3.15 Total: -1.74 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.43 Total: -45.50 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.04 Total: -22.49 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.63 Total: 16.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.00 -6.96 -39.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338814871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.757 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds