Wall clock time and date at job start Tue Mar 31 2020 10:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46565 * 2 1 4 4 C 1.50703 * 109.46776 * 240.00671 * 2 1 3 5 5 H 1.08007 * 119.99769 * 274.62768 * 4 2 1 6 6 C 1.37875 * 120.00043 * 94.63271 * 4 2 1 7 7 N 1.31516 * 119.99589 * 184.34501 * 6 4 2 8 8 Si 1.86792 * 120.00078 * 4.34293 * 6 4 2 9 9 H 1.48504 * 109.47131 * 94.23081 * 8 6 4 10 10 H 1.48498 * 109.47149 * 214.22933 * 8 6 4 11 11 H 1.48498 * 109.47328 * 334.23202 * 8 6 4 12 12 N 1.46497 * 109.46994 * 120.00642 * 2 1 3 13 13 C 1.34780 * 119.99536 * 274.99718 * 12 2 1 14 14 O 1.21716 * 120.00083 * 0.02562 * 13 12 2 15 15 C 1.46260 * 119.99524 * 180.02562 * 13 12 2 16 16 C 1.34976 * 119.99546 * 173.40634 * 15 13 12 17 17 C 1.47002 * 120.00501 * 348.55632 * 16 15 13 18 18 C 1.39971 * 120.07960 * 312.07745 * 17 16 15 19 19 C 1.37800 * 120.08600 * 179.97438 * 18 17 16 20 20 C 1.38733 * 120.10501 * 0.07845 * 19 18 17 21 21 C 1.39720 * 120.13767 * 359.94725 * 20 19 18 22 22 C 1.38044 * 120.14808 * 0.02562 * 21 20 19 23 23 N 1.40250 * 119.17934 * 179.72033 * 21 20 19 24 24 C 1.35087 * 118.97848 * 16.03331 * 23 21 20 25 25 O 1.21295 * 120.13836 * 181.40663 * 24 23 21 26 26 C 1.50747 * 119.72607 * 1.13706 * 24 23 21 27 27 O 1.35883 * 120.48973 * 179.97438 * 20 19 18 28 28 H 1.08998 * 109.47310 * 295.06624 * 1 2 3 29 29 H 1.09002 * 109.47566 * 55.07302 * 1 2 3 30 30 H 1.09009 * 109.46923 * 175.07059 * 1 2 3 31 31 H 0.97001 * 119.99894 * 180.02562 * 7 6 4 32 32 H 0.97002 * 120.00241 * 94.99946 * 12 2 1 33 33 H 1.07994 * 120.00225 * 353.41112 * 15 13 12 34 34 H 1.08006 * 119.99650 * 168.55720 * 16 15 13 35 35 H 1.08001 * 119.95904 * 359.96465 * 18 17 16 36 36 H 1.07998 * 119.94629 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.15815 * 180.02562 * 22 21 20 38 38 H 0.96998 * 120.50617 * 195.80131 * 23 21 20 39 39 H 1.08995 * 109.44776 * 88.91132 * 26 24 23 40 40 H 1.09001 * 109.44476 * 208.84546 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1411 -1.7849 -1.2272 6 6 2.3530 0.0116 -2.3606 7 7 2.7094 -0.6139 -3.4613 8 14 2.2812 1.8779 -2.3283 9 1 3.6271 2.4196 -2.0114 10 1 1.8458 2.3795 -3.6565 11 1 1.3137 2.3182 -1.2914 12 7 2.0183 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8572 1.1625 2.4119 15 6 2.6351 -0.7079 3.5511 16 6 2.8907 -0.0086 4.6770 17 6 2.9236 1.4605 4.6384 18 6 3.6518 2.1200 3.6414 19 6 3.6823 3.4972 3.6048 20 6 2.9928 4.2340 4.5568 21 6 2.2641 3.5828 5.5554 22 6 2.2276 2.2035 5.5993 23 7 1.5793 4.3474 6.5111 24 6 1.3642 5.6588 6.2682 25 8 0.7967 6.3455 7.0914 26 6 1.8376 6.2665 4.9724 27 8 3.0179 5.5923 4.5284 28 1 -0.3634 0.4354 0.9309 29 1 -0.3634 0.5884 -0.8426 30 1 -0.3633 -1.0240 -0.0883 31 1 2.9353 -0.1060 -4.2562 32 1 2.2490 -1.6319 1.1525 33 1 2.7910 -1.7763 3.5319 34 1 3.0711 -0.5286 5.6063 35 1 4.1907 1.5488 2.9000 36 1 4.2453 4.0037 2.8348 37 1 1.6640 1.7000 6.3708 38 1 1.2622 3.9401 7.3323 39 1 1.0571 6.1666 4.2182 40 1 2.0600 7.3223 5.1267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338814871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:37 Heat of formation + Delta-G solvation = -76.841372 kcal Electronic energy + Delta-G solvation = -25885.852530 eV Core-core repulsion = 22051.653191 eV Total energy + Delta-G solvation = -3834.199339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.43844 -40.77402 -39.82801 -38.59822 -36.81691 -36.16380 -34.31820 -34.24423 -31.81886 -31.07863 -30.36328 -28.53015 -27.30913 -25.46758 -23.97032 -23.79414 -21.93181 -21.17617 -20.36943 -19.93624 -19.15506 -18.60494 -18.01492 -17.65398 -17.20053 -17.11246 -16.26278 -16.16694 -15.72406 -15.66453 -15.28622 -15.17827 -14.91267 -14.73117 -14.60260 -14.38227 -14.08162 -14.06184 -13.70818 -13.22724 -12.99649 -12.88125 -12.74558 -12.48198 -12.32762 -12.26055 -11.88920 -11.84461 -11.25337 -11.17470 -10.82513 -10.55219 -10.43023 -9.74669 -9.42678 -8.66410 -8.37358 -6.43162 -0.25016 0.21927 0.70857 1.24923 1.29598 1.35231 1.45855 1.70202 2.22986 2.28256 2.55597 2.65992 2.79987 2.90921 3.09360 3.58935 3.82535 3.95664 4.09993 4.13159 4.25204 4.32387 4.41592 4.52195 4.68515 4.75035 4.77287 4.87048 4.87490 5.09956 5.11935 5.28221 5.30954 5.40760 5.45581 5.48955 5.63855 5.68218 5.72541 5.84115 6.17836 6.24602 6.62963 6.66515 7.05185 7.23806 7.61350 8.77822 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016334 B = 0.003687 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.762887 B = 7591.588459 C = 8524.675202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.235 3.765 3 H 0.034 0.966 4 C -0.525 4.525 5 H 0.055 0.945 6 C 0.031 3.969 7 N -0.933 5.933 8 Si 0.926 3.074 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.254 1.254 12 N -0.701 5.701 13 C 0.516 3.484 14 O -0.578 6.578 15 C -0.202 4.202 16 C -0.023 4.023 17 C -0.055 4.055 18 C -0.046 4.046 19 C -0.129 4.129 20 C 0.068 3.932 21 C 0.072 3.928 22 C -0.098 4.098 23 N -0.648 5.648 24 C 0.491 3.509 25 O -0.550 6.550 26 C 0.047 3.953 27 O -0.313 6.313 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.269 0.731 32 H 0.404 0.596 33 H 0.166 0.834 34 H 0.183 0.817 35 H 0.116 0.884 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.424 0.576 39 H 0.110 0.890 40 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.004 4.551 20.719 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.131 3.869 3 H 0.052 0.948 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.169 4.169 7 N -0.571 5.571 8 Si 0.751 3.249 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.178 1.178 12 N -0.350 5.350 13 C 0.306 3.694 14 O -0.461 6.461 15 C -0.222 4.222 16 C -0.042 4.042 17 C -0.056 4.056 18 C -0.065 4.065 19 C -0.148 4.148 20 C 0.021 3.979 21 C -0.023 4.023 22 C -0.119 4.119 23 N -0.296 5.296 24 C 0.279 3.721 25 O -0.428 6.428 26 C -0.031 4.031 27 O -0.228 6.228 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.134 0.866 36 H 0.153 0.847 37 H 0.181 0.819 38 H 0.264 0.736 39 H 0.128 0.872 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.722 6.013 20.771 21.636 hybrid contribution -0.243 0.046 -0.540 0.594 sum 0.479 6.059 20.231 21.125 Atomic orbital electron populations 1.22101 0.97637 1.00915 0.99195 1.18852 0.91551 0.93369 0.83131 0.94769 1.21241 1.44056 0.94808 0.96195 0.92675 1.25614 0.93862 1.02367 0.95021 1.69990 1.46869 1.37690 1.02592 0.86049 0.79492 0.81515 0.77869 1.19766 1.20574 1.17825 1.46369 1.64808 1.14416 1.09379 1.19240 0.78646 0.86924 0.84619 1.90823 1.52983 1.16829 1.85499 1.23266 1.04693 1.02207 0.92054 1.22627 0.92198 0.90703 0.98664 1.18929 0.97743 0.94326 0.94595 1.21016 0.97122 0.93031 0.95296 1.20443 1.02934 0.93663 0.97791 1.18813 1.00609 0.82435 0.95996 1.17838 0.99736 0.92170 0.92558 1.20849 1.00604 0.89989 1.00418 1.43595 1.55229 1.09252 1.21519 1.21827 0.78135 0.81957 0.90169 1.90784 1.43024 1.60764 1.48229 1.23408 0.88476 0.99243 0.91937 1.86189 1.37284 1.15875 1.83445 0.94484 0.93858 0.92697 0.92136 0.76109 0.81615 0.79965 0.86579 0.84702 0.81941 0.73555 0.87180 0.81396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 9.47 71.98 0.68 -5.16 16 2 C 0.24 10.60 2.17 44.25 0.10 10.70 16 3 H 0.03 1.69 4.56 -2.39 -0.01 1.68 16 4 C -0.52 -27.58 9.05 25.60 0.23 -27.35 16 5 H 0.06 3.09 8.06 -2.91 -0.02 3.07 16 6 C 0.03 1.73 5.47 84.65 0.46 2.20 16 7 N -0.93 -54.90 13.96 21.45 0.30 -54.60 16 8 Si 0.93 43.65 27.25 68.60 1.87 45.52 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.25 -11.77 6.42 99.48 0.64 -11.13 16 12 N -0.70 -25.50 5.06 -450.48 -2.28 -27.79 16 13 C 0.52 16.94 6.91 86.33 0.60 17.53 16 14 O -0.58 -22.59 12.14 -4.40 -0.05 -22.64 16 15 C -0.20 -4.25 9.92 23.61 0.23 -4.01 16 16 C -0.02 -0.39 9.77 23.82 0.23 -0.15 16 17 C -0.06 -1.26 4.34 -20.13 -0.09 -1.35 16 18 C -0.05 -1.26 6.77 22.59 0.15 -1.11 16 19 C -0.13 -3.61 9.98 22.28 0.22 -3.39 16 20 C 0.07 1.78 6.45 22.75 0.15 1.93 16 21 C 0.07 1.64 6.53 38.11 0.25 1.89 16 22 C -0.10 -1.97 9.69 22.65 0.22 -1.75 16 23 N -0.65 -13.11 5.47 -302.77 -1.66 -14.77 16 24 C 0.49 11.23 7.94 87.62 0.70 11.92 16 25 O -0.55 -15.43 17.95 -3.08 -0.06 -15.49 16 26 C 0.05 0.90 7.16 71.25 0.51 1.41 16 27 O -0.31 -7.70 10.44 -92.23 -0.96 -8.66 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.83 8.12 -2.39 -0.02 1.82 16 30 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 31 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.40 12.79 8.57 -92.71 -0.79 12.00 16 33 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 35 H 0.12 3.40 7.44 -2.91 -0.02 3.38 16 36 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 37 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 38 H 0.42 6.54 8.89 -92.71 -0.82 5.72 16 39 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.17 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -72.65 343.28 1.22 -71.43 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.58 Total: 23.68 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 4.64 Total: 3.32 kcal Atomic # 7 Polarization: -93.52 SS G_CDS: -3.64 Total: -97.16 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -1.07 Total: -46.79 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.87 Total: 45.52 kcal Total: -72.65 1.22 -71.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338814871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.411 kcal (2) G-P(sol) polarization free energy of solvation -72.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds