Wall clock time and date at job start Tue Mar 31 2020 10:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.50700 * 109.46781 * 240.00254 * 2 1 3 5 5 H 1.08006 * 119.99723 * 240.00113 * 4 2 1 6 6 C 1.37878 * 120.00527 * 59.99960 * 4 2 1 7 7 N 1.31515 * 119.99461 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00209 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46837 * 120.00480 * 8 6 4 11 11 H 1.48504 * 109.47133 * 239.99867 * 8 6 4 12 12 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 13 13 C 1.34784 * 119.99635 * 274.99773 * 12 2 1 14 14 O 1.21690 * 119.99870 * 0.02562 * 13 12 2 15 15 C 1.46660 * 119.99858 * 180.02562 * 13 12 2 16 16 C 1.36536 * 125.98751 * 180.02562 * 15 13 12 17 17 C 1.40365 * 106.71040 * 179.97438 * 16 15 13 18 18 C 1.35129 * 107.11426 * 0.02562 * 17 16 15 19 19 C 1.50702 * 125.61839 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47092 * 89.99872 * 19 18 17 21 21 C 1.35767 * 119.62371 * 269.73056 * 20 19 18 22 22 C 1.35352 * 120.70158 * 179.72142 * 21 20 19 23 23 C 1.40194 * 119.94702 * 0.53034 * 22 21 20 24 24 C 1.36406 * 119.26492 * 359.74172 * 23 22 21 25 25 C 1.34657 * 119.62813 * 90.00042 * 20 19 18 26 26 O 1.22060 * 119.98286 * 0.02562 * 25 20 19 27 27 O 1.33936 * 108.76739 * 359.76891 * 18 17 16 28 28 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 0.96997 * 119.99851 * 179.97438 * 7 6 4 32 32 H 0.96995 * 120.00292 * 95.27206 * 12 2 1 33 33 H 1.08003 * 126.64449 * 359.97438 * 16 15 13 34 34 H 1.08005 * 126.44523 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46890 * 209.99732 * 19 18 17 36 36 H 1.09000 * 109.46500 * 329.99717 * 19 18 17 37 37 H 1.08001 * 119.64453 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.02716 * 180.27046 * 22 21 20 39 39 H 1.08003 * 120.36929 * 179.77710 * 23 22 21 40 40 H 1.08001 * 120.34443 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1472 -0.1857 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1623 2.4119 15 6 2.6365 -0.7096 3.5544 16 6 2.8128 -0.1509 4.7877 17 6 3.2927 -1.1685 5.6269 18 6 3.3877 -2.2895 4.8784 19 6 3.8616 -3.6339 5.3675 20 7 2.7182 -4.4042 5.8627 21 6 2.3617 -4.3112 7.1694 22 6 1.3056 -5.0088 7.6490 23 6 0.5746 -5.8468 6.7953 24 6 0.9377 -5.9432 5.4839 25 6 2.0361 -5.2007 5.0180 26 8 2.3721 -5.2780 3.8472 27 8 2.9869 -2.0102 3.6313 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7087 1.1613 -3.4843 32 1 2.2528 -1.6308 1.1515 33 1 2.6202 0.8753 5.0640 34 1 3.5404 -1.0733 6.6739 35 1 4.3348 -4.1729 4.5467 36 1 4.5820 -3.4939 6.1734 37 1 2.9243 -3.6705 7.8323 38 1 1.0289 -4.9233 8.6894 39 1 -0.2671 -6.4094 7.1715 40 1 0.3870 -6.5837 4.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465018319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:54 Heat of formation + Delta-G solvation = -17.102093 kcal Electronic energy + Delta-G solvation = -25572.813960 eV Core-core repulsion = 21741.205110 eV Total energy + Delta-G solvation = -3831.608849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.74546 -41.43114 -38.70736 -37.11756 -35.30935 -34.92507 -33.10552 -32.36315 -31.00758 -30.09019 -29.05283 -26.94884 -25.24944 -24.23918 -23.29439 -22.50404 -21.49743 -20.62966 -19.57178 -18.39536 -17.92584 -17.51886 -16.76848 -16.62395 -16.03594 -15.93448 -15.29751 -15.04792 -14.68214 -14.41646 -14.33837 -13.87017 -13.60701 -13.53483 -12.94384 -12.88886 -12.66355 -12.44796 -12.40274 -12.17305 -12.01746 -11.71854 -11.09023 -10.96041 -10.77908 -10.53989 -10.31544 -10.22690 -10.20643 -10.01247 -9.49310 -9.05074 -8.66067 -8.54776 -8.26590 -7.97654 -6.11406 -4.20327 0.51748 1.09697 1.62200 2.09091 2.56759 2.71447 3.26841 3.34326 3.38655 3.41517 3.73330 3.93272 4.18396 4.23343 4.36918 4.48681 4.59017 4.75314 4.83941 4.93882 5.02111 5.04436 5.21063 5.26636 5.62916 5.66791 5.75134 5.75922 5.89245 5.98368 6.19831 6.32383 6.74764 6.80749 6.90408 6.96037 7.12332 7.34112 7.54120 7.70074 7.81468 7.89211 8.12688 8.56478 8.72505 8.96618 9.46524 10.94852 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.003222 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.449175 B = 8686.887469 C = 9571.061320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.064 0.936 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.689 5.689 13 C 0.581 3.419 14 O -0.532 6.532 15 C -0.037 4.037 16 C -0.146 4.146 17 C -0.192 4.192 18 C -0.031 4.031 19 C 0.172 3.828 20 N -0.497 5.497 21 C 0.134 3.866 22 C -0.233 4.233 23 C -0.020 4.020 24 C -0.238 4.238 25 C 0.510 3.490 26 O -0.534 6.534 27 O -0.144 6.144 28 H 0.016 0.984 29 H 0.093 0.907 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.396 0.604 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.162 0.838 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -11.764 24.549 27.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.572 4.572 5 H 0.082 0.918 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.731 3.269 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.336 5.336 13 C 0.365 3.635 14 O -0.412 6.412 15 C -0.091 4.091 16 C -0.166 4.166 17 C -0.212 4.212 18 C -0.084 4.084 19 C 0.051 3.949 20 N -0.209 5.209 21 C 0.007 3.993 22 C -0.256 4.256 23 C -0.042 4.042 24 C -0.260 4.260 25 C 0.312 3.688 26 O -0.414 6.414 27 O -0.038 6.038 28 H 0.035 0.965 29 H 0.112 0.888 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.230 0.770 33 H 0.179 0.821 34 H 0.172 0.828 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.655 -11.064 23.315 26.065 hybrid contribution 0.278 -0.708 -0.536 0.930 sum 3.933 -11.772 22.780 25.941 Atomic orbital electron populations 1.22093 0.98063 0.99430 1.01087 1.18893 0.91331 0.94048 0.79626 0.92946 1.21255 1.32507 1.13310 0.90151 0.91822 1.24882 0.94748 0.94952 0.99081 1.69910 1.35896 1.22490 1.23848 0.86355 0.78650 0.79565 0.82358 1.19621 1.20807 1.20833 1.46599 1.62827 1.14092 1.10050 1.16688 0.79312 0.86063 0.81475 1.90839 1.52251 1.14226 1.83879 1.22936 1.06468 0.81485 0.98167 1.21884 1.02220 1.01216 0.91314 1.21536 1.06613 0.92167 1.00929 1.22531 1.05432 0.96981 0.83495 1.20251 0.86666 0.85928 1.02030 1.45666 1.28308 1.37746 1.09173 1.21965 0.96118 0.96721 0.84465 1.20655 0.99123 1.04090 1.01716 1.21456 0.96528 0.93252 0.92917 1.22186 1.00478 1.05831 0.97510 1.17277 0.84658 0.80757 0.86146 1.91038 1.68532 1.66204 1.15670 1.84143 1.62757 1.26779 1.30119 0.96535 0.88823 0.95239 0.92586 0.77034 0.82132 0.82779 0.86192 0.85663 0.82067 0.83734 0.84792 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.26 37.16 0.34 -3.50 16 2 C 0.26 7.00 2.56 -69.08 -0.18 6.82 16 3 H 0.05 1.57 7.58 -51.93 -0.39 1.17 16 4 C -0.53 -14.80 8.73 -34.44 -0.30 -15.10 16 5 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.88 -25.37 11.32 55.43 0.63 -24.74 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.69 -15.98 5.07 -56.25 -0.29 -16.27 16 13 C 0.58 12.89 7.75 -12.86 -0.10 12.79 16 14 O -0.53 -13.22 16.53 5.20 0.09 -13.14 16 15 C -0.04 -0.67 7.13 -36.80 -0.26 -0.93 16 16 C -0.15 -2.16 10.62 -39.40 -0.42 -2.58 16 17 C -0.19 -2.14 10.77 -39.89 -0.43 -2.57 16 18 C -0.03 -0.39 6.89 -35.41 -0.24 -0.63 16 19 C 0.17 1.52 5.86 -5.20 -0.03 1.49 16 20 N -0.50 -4.74 2.57 -121.07 -0.31 -5.05 16 21 C 0.13 0.79 10.28 -16.84 -0.17 0.62 16 22 C -0.23 -1.30 10.01 -39.88 -0.40 -1.70 16 23 C -0.02 -0.14 10.10 -39.51 -0.40 -0.54 16 24 C -0.24 -2.49 9.99 -39.38 -0.39 -2.88 16 25 C 0.51 6.73 7.40 -15.45 -0.11 6.62 16 26 O -0.53 -9.47 16.64 4.86 0.08 -9.39 16 27 O -0.14 -2.45 10.40 4.97 0.05 -2.40 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 2.59 6.07 -51.93 -0.32 2.28 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.40 8.60 8.29 -40.82 -0.34 8.26 16 33 H 0.16 2.21 8.06 -52.48 -0.42 1.79 16 34 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 35 H 0.12 1.22 7.39 -51.93 -0.38 0.84 16 36 H 0.13 0.49 8.01 -51.93 -0.42 0.07 16 37 H 0.16 0.31 8.03 -52.49 -0.42 -0.11 16 38 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 40 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 354.02 15.07 5.34 5.34 Total: -1.00 -36.13 354.02 -7.40 -43.53 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.77 Total: 6.16 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -3.19 Total: -0.36 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.03 Total: -46.06 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: 0.22 Total: -24.92 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.13 -7.40 -43.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465018319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.427 kcal (2) G-P(sol) polarization free energy of solvation -36.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds