Wall clock time and date at job start Tue Mar 31 2020 10:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.50700 * 109.46781 * 240.00254 * 2 1 3 5 5 H 1.08006 * 119.99723 * 240.00113 * 4 2 1 6 6 C 1.37878 * 120.00527 * 59.99960 * 4 2 1 7 7 N 1.31515 * 119.99461 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00209 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47138 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.46837 * 120.00480 * 8 6 4 11 11 H 1.48504 * 109.47133 * 239.99867 * 8 6 4 12 12 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 13 13 C 1.34784 * 119.99635 * 274.99773 * 12 2 1 14 14 O 1.21690 * 119.99870 * 0.02562 * 13 12 2 15 15 C 1.46660 * 119.99858 * 180.02562 * 13 12 2 16 16 C 1.36536 * 125.98751 * 180.02562 * 15 13 12 17 17 C 1.40365 * 106.71040 * 179.97438 * 16 15 13 18 18 C 1.35129 * 107.11426 * 0.02562 * 17 16 15 19 19 C 1.50702 * 125.61839 * 179.97438 * 18 17 16 20 20 N 1.46495 * 109.47092 * 89.99872 * 19 18 17 21 21 C 1.35767 * 119.62371 * 269.73056 * 20 19 18 22 22 C 1.35352 * 120.70158 * 179.72142 * 21 20 19 23 23 C 1.40194 * 119.94702 * 0.53034 * 22 21 20 24 24 C 1.36406 * 119.26492 * 359.74172 * 23 22 21 25 25 C 1.34657 * 119.62813 * 90.00042 * 20 19 18 26 26 O 1.22060 * 119.98286 * 0.02562 * 25 20 19 27 27 O 1.33936 * 108.76739 * 359.76891 * 18 17 16 28 28 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 31 31 H 0.96997 * 119.99851 * 179.97438 * 7 6 4 32 32 H 0.96995 * 120.00292 * 95.27206 * 12 2 1 33 33 H 1.08003 * 126.64449 * 359.97438 * 16 15 13 34 34 H 1.08005 * 126.44523 * 179.97438 * 17 16 15 35 35 H 1.08998 * 109.46890 * 209.99732 * 19 18 17 36 36 H 1.09000 * 109.46500 * 329.99717 * 19 18 17 37 37 H 1.08001 * 119.64453 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.02716 * 180.27046 * 22 21 20 39 39 H 1.08003 * 120.36929 * 179.77710 * 23 22 21 40 40 H 1.08001 * 120.34443 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 3.1473 -2.2863 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1472 -0.1857 -4.8162 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1623 2.4119 15 6 2.6365 -0.7096 3.5544 16 6 2.8128 -0.1509 4.7877 17 6 3.2927 -1.1685 5.6269 18 6 3.3877 -2.2895 4.8784 19 6 3.8616 -3.6339 5.3675 20 7 2.7182 -4.4042 5.8627 21 6 2.3617 -4.3112 7.1694 22 6 1.3056 -5.0088 7.6490 23 6 0.5746 -5.8468 6.7953 24 6 0.9377 -5.9432 5.4839 25 6 2.0361 -5.2007 5.0180 26 8 2.3721 -5.2780 3.8472 27 8 2.9869 -2.0102 3.6313 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7087 1.1613 -3.4843 32 1 2.2528 -1.6308 1.1515 33 1 2.6202 0.8753 5.0640 34 1 3.5404 -1.0733 6.6739 35 1 4.3348 -4.1729 4.5467 36 1 4.5820 -3.4939 6.1734 37 1 2.9243 -3.6705 7.8323 38 1 1.0289 -4.9233 8.6894 39 1 -0.2671 -6.4094 7.1715 40 1 0.3870 -6.5837 4.8110 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465018319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:53 Heat of formation + Delta-G solvation = -43.036715 kcal Electronic energy + Delta-G solvation = -25573.938569 eV Core-core repulsion = 21741.205110 eV Total energy + Delta-G solvation = -3832.733459 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.87164 -42.19274 -40.50526 -37.98858 -36.92302 -36.00313 -34.54790 -34.07090 -32.14450 -30.98018 -30.64037 -28.03666 -27.42507 -24.99515 -24.34101 -23.62650 -22.62499 -22.22448 -21.21101 -19.90673 -18.74096 -18.23146 -18.13309 -17.60598 -17.36576 -17.27308 -17.04364 -16.33126 -15.88428 -15.68584 -15.37835 -15.13582 -15.05476 -14.54384 -14.31869 -14.27090 -13.99102 -13.79581 -13.32076 -13.17163 -13.09685 -12.97760 -12.85771 -12.82114 -12.67662 -12.37808 -12.20508 -11.34745 -11.21624 -11.20086 -11.10574 -11.04215 -10.69150 -10.09468 -9.66560 -8.96147 -8.25429 -6.43358 -0.17445 -0.03296 0.96153 1.10779 1.39580 1.40162 1.52155 1.54995 1.87144 2.10872 2.26548 2.46404 2.71165 3.04514 3.40079 3.63412 3.83996 3.85697 3.92779 4.08237 4.19913 4.33108 4.39404 4.50536 4.55737 4.62691 4.71551 4.80672 4.84838 4.96151 5.07344 5.21161 5.26942 5.34630 5.42605 5.43446 5.53982 5.69594 5.69784 5.88304 5.97597 6.09488 6.59627 6.69765 6.99404 7.08947 7.30036 8.81549 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.016093 B = 0.003222 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.449175 B = 8686.887469 C = 9571.061320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.011 0.989 4 C -0.555 4.555 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.975 3.025 9 H -0.267 1.267 10 H -0.274 1.274 11 H -0.276 1.276 12 N -0.695 5.695 13 C 0.580 3.420 14 O -0.571 6.571 15 C -0.091 4.091 16 C -0.125 4.125 17 C -0.169 4.169 18 C -0.025 4.025 19 C 0.170 3.830 20 N -0.494 5.494 21 C 0.137 3.863 22 C -0.233 4.233 23 C 0.008 3.992 24 C -0.292 4.292 25 C 0.489 3.511 26 O -0.608 6.608 27 O -0.175 6.175 28 H 0.016 0.984 29 H 0.076 0.924 30 H 0.035 0.965 31 H 0.269 0.731 32 H 0.401 0.599 33 H 0.170 0.830 34 H 0.215 0.785 35 H 0.097 0.903 36 H 0.192 0.808 37 H 0.219 0.781 38 H 0.187 0.813 39 H 0.163 0.837 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.874 -12.760 29.013 32.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.029 0.971 4 C -0.593 4.593 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.799 3.201 9 H -0.191 1.191 10 H -0.199 1.199 11 H -0.201 1.201 12 N -0.342 5.342 13 C 0.367 3.633 14 O -0.454 6.454 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.189 4.189 18 C -0.078 4.078 19 C 0.049 3.951 20 N -0.204 5.204 21 C 0.012 3.988 22 C -0.254 4.254 23 C -0.014 4.014 24 C -0.314 4.314 25 C 0.294 3.706 26 O -0.495 6.495 27 O -0.071 6.071 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.187 0.813 34 H 0.232 0.768 35 H 0.115 0.885 36 H 0.209 0.791 37 H 0.235 0.765 38 H 0.204 0.796 39 H 0.181 0.819 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.801 -12.065 27.854 30.732 hybrid contribution -0.070 -0.435 -1.627 1.686 sum 4.731 -12.500 26.227 29.436 Atomic orbital electron populations 1.21915 0.97812 0.99414 1.00147 1.18522 0.91502 0.92193 0.81128 0.97137 1.21508 1.33125 1.13645 0.90993 0.91685 1.25782 0.94677 0.95574 1.02161 1.70030 1.36538 1.23626 1.24870 0.85251 0.78263 0.78413 0.78153 1.19111 1.19933 1.20143 1.46394 1.63650 1.14207 1.09903 1.17137 0.78125 0.85822 0.82194 1.90786 1.53913 1.15815 1.84882 1.22147 1.11657 0.82853 0.97667 1.22285 0.99568 1.02334 0.90392 1.22061 1.04509 0.89436 1.02852 1.23527 1.03154 0.99093 0.82004 1.20709 0.87115 0.83608 1.03648 1.45640 1.27878 1.36596 1.10318 1.22971 0.96286 0.96593 0.82964 1.21246 0.98308 1.02623 1.03258 1.21908 0.96303 0.91871 0.91323 1.22091 1.01599 1.08227 0.99443 1.17729 0.85472 0.81573 0.85816 1.90984 1.70810 1.69131 1.18583 1.84118 1.63766 1.26172 1.33016 0.96481 0.90580 0.94615 0.92179 0.76439 0.81267 0.76781 0.88505 0.79051 0.76461 0.79595 0.81921 0.84813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.35 9.26 71.98 0.67 -6.69 16 2 C 0.27 15.27 2.56 44.25 0.11 15.39 16 3 H 0.01 0.69 7.58 -2.39 -0.02 0.67 16 4 C -0.55 -32.05 8.73 25.60 0.22 -31.83 16 5 H 0.06 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -54.04 11.32 21.45 0.24 -53.79 16 8 Si 0.98 44.55 29.54 68.60 2.03 46.57 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 N -0.70 -34.48 5.07 -450.09 -2.28 -36.76 16 13 C 0.58 27.30 7.75 86.44 0.67 27.97 16 14 O -0.57 -30.09 16.53 -4.32 -0.07 -30.16 16 15 C -0.09 -3.37 7.13 24.07 0.17 -3.20 16 16 C -0.13 -3.46 10.62 22.39 0.24 -3.22 16 17 C -0.17 -2.94 10.77 22.07 0.24 -2.70 16 18 C -0.03 -0.56 6.89 24.97 0.17 -0.39 16 19 C 0.17 2.45 5.86 85.63 0.50 2.95 16 20 N -0.49 -8.07 2.57 -655.08 -1.68 -9.75 16 21 C 0.14 0.81 10.28 83.42 0.86 1.66 16 22 C -0.23 -1.30 10.01 22.08 0.22 -1.08 16 23 C 0.01 0.09 10.10 22.32 0.23 0.31 16 24 C -0.29 -6.26 9.99 22.40 0.22 -6.04 16 25 C 0.49 13.28 7.40 84.82 0.63 13.91 16 26 O -0.61 -23.56 16.64 -5.51 -0.09 -23.65 16 27 O -0.17 -6.08 10.40 -5.12 -0.05 -6.13 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 4.42 6.07 -2.38 -0.01 4.41 16 30 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 32 H 0.40 18.80 8.29 -92.71 -0.77 18.03 16 33 H 0.17 4.32 8.06 -2.91 -0.02 4.30 16 34 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 35 H 0.10 1.94 7.39 -2.39 -0.02 1.92 16 36 H 0.19 0.17 8.01 -2.39 -0.02 0.15 16 37 H 0.22 -1.19 8.03 -2.91 -0.02 -1.21 16 38 H 0.19 -0.39 8.06 -2.91 -0.02 -0.42 16 39 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 40 H 0.13 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -90.17 354.02 4.00 -86.17 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.31 Total: 18.93 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 5.60 Total: 8.57 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.72 Total: -100.30 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -0.22 Total: -59.94 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -90.17 4.00 -86.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465018319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.132 kcal (2) G-P(sol) polarization free energy of solvation -90.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds