Wall clock time and date at job start Tue Mar 31 2020 11:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46995 * 2 1 4 4 C 1.37101 * 120.00456 * 87.89693 * 3 2 1 5 5 H 1.08004 * 119.99629 * 164.74055 * 4 3 2 6 6 C 1.38946 * 119.99848 * 344.74742 * 4 3 2 7 7 N 1.31412 * 119.99931 * 0.70643 * 6 4 3 8 8 Si 1.86801 * 119.99755 * 180.70402 * 6 4 3 9 9 H 1.48496 * 109.47041 * 90.00381 * 8 6 4 10 10 H 1.48498 * 109.46809 * 209.99882 * 8 6 4 11 11 H 1.48496 * 109.47208 * 329.99757 * 8 6 4 12 12 C 1.34780 * 119.99659 * 267.89918 * 3 2 1 13 13 O 1.21292 * 120.00070 * 174.18995 * 12 3 2 14 14 C 1.50704 * 120.00008 * 354.18878 * 12 3 2 15 15 H 1.08998 * 109.47276 * 353.05344 * 14 12 3 16 16 N 1.46906 * 109.46790 * 113.05067 * 14 12 3 17 17 C 1.50701 * 109.47325 * 233.04936 * 14 12 3 18 18 C 1.38262 * 120.00314 * 266.96632 * 17 14 12 19 19 C 1.38204 * 119.99832 * 179.97438 * 18 17 14 20 20 C 1.38254 * 120.00421 * 359.80666 * 19 18 17 21 21 C 1.38220 * 119.99729 * 0.44747 * 20 19 18 22 22 C 1.38212 * 119.99601 * 86.98403 * 17 14 12 23 23 C 1.50694 * 120.00333 * 359.97438 * 22 17 14 24 24 F 1.39897 * 109.47388 * 174.67488 * 23 22 17 25 25 F 1.39904 * 109.47318 * 294.67481 * 23 22 17 26 26 F 1.39905 * 109.47299 * 54.67461 * 23 22 17 27 27 H 1.08999 * 109.47586 * 306.91870 * 1 2 3 28 28 H 1.09001 * 109.46986 * 66.92446 * 1 2 3 29 29 H 1.09004 * 109.46954 * 186.91727 * 1 2 3 30 30 H 1.08994 * 109.47116 * 239.99347 * 2 1 3 31 31 H 1.09002 * 109.46715 * 119.99699 * 2 1 3 32 32 H 0.97001 * 119.99850 * 180.02562 * 7 6 4 33 33 H 1.00895 * 110.99859 * 296.04545 * 16 14 12 34 34 H 1.00903 * 110.99967 * 60.00266 * 16 14 12 35 35 H 1.07999 * 119.99449 * 359.97351 * 18 17 14 36 36 H 1.08008 * 119.99689 * 179.97438 * 19 18 17 37 37 H 1.07998 * 120.00455 * 180.23340 * 20 19 18 38 38 H 1.07998 * 119.99604 * 179.78322 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2058 2.0421 1.1865 5 1 2.7876 2.9516 1.2118 6 6 1.6473 1.5417 2.3562 7 7 0.9511 0.4274 2.3276 8 14 1.8862 2.4527 3.9694 9 1 0.7829 3.4292 4.1544 10 1 1.8805 1.4809 5.0922 11 1 3.1850 3.1721 3.9440 12 6 2.2833 2.0022 -1.1665 13 8 2.5859 3.1767 -1.1732 14 6 2.2035 1.2373 -2.4625 15 1 2.0415 0.1803 -2.2512 16 7 1.0876 1.7524 -3.2672 17 6 3.4924 1.4053 -3.2252 18 6 3.6136 2.4125 -4.1646 19 6 4.7958 2.5668 -4.8636 20 6 5.8586 1.7166 -4.6207 21 6 5.7357 0.7065 -3.6853 22 6 4.5532 0.5523 -2.9858 23 6 4.4212 -0.5454 -1.9618 24 9 5.5692 -1.3446 -1.9841 25 9 4.2703 0.0185 -0.6904 26 9 3.3014 -1.3293 -2.2601 27 1 -0.3634 0.6173 0.8216 28 1 -0.3633 0.4028 -0.9455 29 1 -0.3633 -1.0202 0.1238 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 0.5609 0.0783 3.1442 33 1 0.2049 1.5928 -2.8054 34 1 1.2144 2.7313 -3.4766 35 1 2.7843 3.0785 -4.3521 36 1 4.8903 3.3534 -5.5977 37 1 6.7837 1.8396 -5.1642 38 1 6.5647 0.0402 -3.4981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001577663077.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:36 Heat of formation + Delta-G solvation = -142.184491 kcal Electronic energy + Delta-G solvation = -28873.254033 eV Core-core repulsion = 24494.364463 eV Total energy + Delta-G solvation = -4378.889570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -51.29867 -48.82298 -48.65975 -41.28158 -39.88685 -37.21417 -35.71592 -33.61652 -33.08910 -31.47346 -31.26112 -28.07056 -27.05095 -25.93471 -24.03572 -23.15890 -22.85180 -20.70105 -19.58294 -19.51532 -19.31277 -18.89668 -18.39466 -17.34966 -16.68890 -16.61625 -15.97949 -15.96182 -15.90328 -15.62699 -15.51756 -15.30152 -15.12411 -14.85040 -14.81771 -14.59010 -14.50775 -14.24748 -13.81024 -13.64554 -13.52341 -13.18957 -13.14856 -12.84933 -12.66596 -12.22400 -12.18567 -12.06232 -12.04459 -11.67735 -11.13565 -10.76470 -10.21975 -10.00515 -9.72602 -9.47355 -8.20135 -5.92970 -0.06084 0.29188 1.33533 1.38902 1.49941 1.62243 1.92381 2.23226 2.52383 2.67587 2.98012 3.03132 3.09676 3.33042 3.39912 3.79454 3.80941 3.90038 4.04895 4.17315 4.42015 4.43876 4.51909 4.68104 4.85511 4.90391 4.93813 5.12685 5.22097 5.36392 5.37590 5.40300 5.53630 5.83406 5.85095 5.91896 6.04595 6.26556 6.51232 7.14626 7.46460 7.98419 8.65350 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.016716 B = 0.005786 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.684849 B = 4837.766588 C = 5142.242311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.121 3.879 3 N -0.433 5.433 4 C -0.333 4.333 5 H 0.069 0.931 6 C -0.002 4.002 7 N -0.876 5.876 8 Si 0.988 3.012 9 H -0.275 1.275 10 H -0.268 1.268 11 H -0.278 1.278 12 C 0.406 3.594 13 O -0.631 6.631 14 C 0.098 3.902 15 H 0.112 0.888 16 N -0.804 5.804 17 C -0.031 4.031 18 C -0.108 4.108 19 C -0.082 4.082 20 C -0.117 4.117 21 C -0.080 4.080 22 C -0.204 4.204 23 C 0.497 3.503 24 F -0.173 7.173 25 F -0.179 7.179 26 F -0.176 7.176 27 H 0.066 0.934 28 H 0.026 0.974 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.271 0.729 33 H 0.349 0.651 34 H 0.347 0.653 35 H 0.137 0.863 36 H 0.168 0.832 37 H 0.175 0.825 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -2.877 -12.723 14.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.001 4.001 3 N -0.150 5.150 4 C -0.461 4.461 5 H 0.087 0.913 6 C -0.204 4.204 7 N -0.516 5.516 8 Si 0.812 3.188 9 H -0.200 1.200 10 H -0.193 1.193 11 H -0.204 1.204 12 C 0.193 3.807 13 O -0.519 6.519 14 C -0.017 4.017 15 H 0.129 0.871 16 N -0.335 5.335 17 C -0.033 4.033 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.098 4.098 22 C -0.206 4.206 23 C 0.443 3.557 24 F -0.154 7.154 25 F -0.161 7.161 26 F -0.158 7.158 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.186 0.814 37 H 0.192 0.808 38 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.124 -3.042 -13.058 14.739 hybrid contribution -0.442 0.685 2.304 2.444 sum 5.682 -2.357 -10.753 12.388 Atomic orbital electron populations 1.22046 0.95367 1.01629 0.99610 1.21686 0.95504 0.82486 1.00445 1.43955 1.54651 1.12010 1.04398 1.19631 1.31998 1.08921 0.85549 0.91264 1.25953 0.95153 0.97329 1.01947 1.70270 1.32929 1.19497 1.28871 0.85012 0.78339 0.78016 0.77416 1.20037 1.19255 1.20352 1.21451 0.84927 0.88046 0.86256 1.90459 1.56000 1.18101 1.87343 1.20700 0.91409 1.00934 0.88629 0.87065 1.59273 1.03441 1.24162 1.46613 1.19304 0.92796 0.95202 0.95959 1.21135 0.99781 0.96416 0.95317 1.21801 0.91502 0.98739 0.97940 1.21596 1.00597 0.93803 0.97463 1.21268 0.94954 0.98949 0.94595 1.19944 0.99147 0.99412 1.02053 1.18638 0.73672 0.82046 0.81376 1.93128 1.50051 1.75626 1.96587 1.93357 1.95243 1.84838 1.42636 1.93086 1.52975 1.76604 1.93113 0.91554 0.95521 0.92261 0.93302 0.89545 0.91824 0.83760 0.83815 0.84526 0.81406 0.80806 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.52 9.35 71.98 0.67 -4.85 16 2 C 0.12 5.69 4.10 86.38 0.35 6.04 16 3 N -0.43 -22.66 1.90 -635.54 -1.21 -23.87 16 4 C -0.33 -19.08 9.43 84.04 0.79 -18.28 16 5 H 0.07 4.29 7.31 -2.91 -0.02 4.27 16 6 C 0.00 -0.13 5.32 84.93 0.45 0.32 16 7 N -0.88 -44.55 7.31 21.66 0.16 -44.39 16 8 Si 0.99 42.94 29.55 68.60 2.03 44.96 16 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.41 20.21 5.56 87.66 0.49 20.70 16 13 O -0.63 -35.66 16.50 -3.07 -0.05 -35.71 16 14 C 0.10 3.87 2.50 43.42 0.11 3.98 16 15 H 0.11 4.44 3.02 -2.39 -0.01 4.44 16 16 N -0.80 -26.86 8.86 -174.94 -1.55 -28.41 16 17 C -0.03 -1.12 4.80 -19.86 -0.10 -1.22 16 18 C -0.11 -3.20 9.28 22.27 0.21 -3.00 16 19 C -0.08 -1.77 10.05 22.27 0.22 -1.55 16 20 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 21 C -0.08 -2.03 9.43 22.27 0.21 -1.82 16 22 C -0.20 -6.85 5.38 -19.87 -0.11 -6.95 16 23 C 0.50 17.89 2.80 71.23 0.20 18.09 16 24 F -0.17 -5.43 15.99 44.97 0.72 -4.71 16 25 F -0.18 -7.92 13.32 44.97 0.60 -7.32 16 26 F -0.18 -6.27 13.48 44.97 0.61 -5.66 16 27 H 0.07 3.24 6.06 -2.39 -0.01 3.22 16 28 H 0.03 1.02 7.69 -2.39 -0.02 1.01 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.05 2.11 3.35 -2.39 -0.01 2.10 16 31 H 0.09 4.46 6.08 -2.39 -0.01 4.44 16 32 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 33 H 0.35 11.34 8.61 -89.70 -0.77 10.57 16 34 H 0.35 11.23 7.19 -89.69 -0.64 10.58 16 35 H 0.14 3.81 6.32 -2.91 -0.02 3.79 16 36 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.16 3.19 7.17 -2.91 -0.02 3.17 16 Total: -1.00 -67.24 311.64 4.78 -62.46 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: -0.26 Total: 33.28 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 3.73 Total: 9.37 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -2.60 Total: -96.67 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.05 Total: -35.71 kcal Atomic # 9 Polarization: -19.62 SS G_CDS: 1.92 Total: -17.69 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -67.24 4.78 -62.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001577663077.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.721 kcal (2) G-P(sol) polarization free energy of solvation -67.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds