Wall clock time and date at job start Tue Mar 31 2020 11:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46502 * 120.00144 * 2 1 4 4 C 1.50704 * 109.47071 * 270.00097 * 3 2 1 5 5 H 1.07998 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99691 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00365 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99818 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47632 * 89.99391 * 8 6 4 10 10 H 1.48496 * 109.47136 * 210.00271 * 8 6 4 11 11 H 1.48509 * 109.47190 * 329.99625 * 8 6 4 12 12 C 1.34778 * 120.00295 * 179.97438 * 2 1 3 13 13 O 1.21283 * 120.00269 * 175.14457 * 12 2 1 14 14 C 1.50698 * 119.99586 * 355.15254 * 12 2 1 15 15 H 1.08999 * 109.47483 * 44.18538 * 14 12 2 16 16 N 1.46899 * 109.47193 * 164.18782 * 14 12 2 17 17 C 1.50698 * 109.46752 * 284.18518 * 14 12 2 18 18 C 1.38254 * 120.00606 * 342.36599 * 17 14 12 19 19 C 1.38211 * 120.00652 * 180.27160 * 18 17 14 20 20 C 1.38256 * 119.99660 * 359.75400 * 19 18 17 21 21 C 1.38216 * 120.00169 * 359.97438 * 20 19 18 22 22 C 1.38217 * 119.99831 * 162.13661 * 17 14 12 23 23 C 1.50703 * 120.00097 * 359.97438 * 22 17 14 24 24 F 1.39901 * 109.47101 * 176.21966 * 23 22 17 25 25 F 1.39895 * 109.46892 * 56.22324 * 23 22 17 26 26 F 1.39901 * 109.46800 * 296.22093 * 23 22 17 27 27 H 1.09003 * 109.47090 * 274.43266 * 1 2 3 28 28 H 1.09000 * 109.47450 * 34.43327 * 1 2 3 29 29 H 1.08996 * 109.47236 * 154.43041 * 1 2 3 30 30 H 1.08997 * 109.47058 * 29.99954 * 3 2 1 31 31 H 1.09000 * 109.47399 * 149.99858 * 3 2 1 32 32 H 0.97001 * 120.00220 * 179.97438 * 7 6 4 33 33 H 1.00896 * 111.00199 * 296.04323 * 16 14 12 34 34 H 1.00909 * 110.99795 * 59.99830 * 16 14 12 35 35 H 1.08008 * 119.99692 * 0.02562 * 18 17 14 36 36 H 1.08001 * 120.00031 * 179.72427 * 19 18 17 37 37 H 1.07997 * 120.00212 * 179.97438 * 20 19 18 38 38 H 1.08000 * 120.00037 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5524 3.6186 -0.6732 8 14 3.4367 3.4176 -3.4339 9 1 2.3063 4.2602 -3.9003 10 1 4.6968 4.2009 -3.4966 11 1 3.5541 2.2206 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3485 -1.1691 -0.0884 14 6 1.3894 -2.4699 0.1114 15 1 0.5192 -2.4454 -0.5446 16 7 2.2702 -3.5768 -0.2846 17 6 0.9394 -2.6708 1.5355 18 6 1.5249 -1.9430 2.5548 19 6 1.1161 -2.1313 3.8616 20 6 0.1181 -3.0439 4.1489 21 6 -0.4711 -3.7675 3.1294 22 6 -0.0619 -3.5793 1.8222 23 6 -0.7042 -4.3685 0.7106 24 9 -1.6206 -5.2763 1.2523 25 9 0.2814 -5.0663 0.0044 26 9 -1.3697 -3.4956 -0.1568 27 1 -0.3633 0.0794 1.0246 28 1 -0.3634 0.8476 -0.5811 29 1 -0.3633 -0.9270 -0.4435 30 1 1.6084 2.0284 0.5138 31 1 3.1499 1.1384 0.5138 32 1 4.0293 4.4445 -0.8504 33 1 2.5339 -3.4995 -1.2554 34 1 3.0850 -3.6207 0.3091 35 1 2.3046 -1.2300 2.3303 36 1 1.5767 -1.5659 4.6583 37 1 -0.2010 -3.1914 5.1701 38 1 -1.2505 -4.4807 3.3539 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578461705.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:46 Heat of formation + Delta-G solvation = -167.530689 kcal Electronic energy + Delta-G solvation = -27663.895841 eV Core-core repulsion = 23283.907178 eV Total energy + Delta-G solvation = -4379.988663 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.04621 -48.61720 -48.38239 -41.59901 -39.91746 -36.81759 -35.78942 -34.69302 -32.94660 -31.75676 -30.08311 -27.76843 -27.19735 -26.44883 -24.78841 -23.37377 -22.52005 -20.13092 -19.40850 -19.30420 -19.27093 -18.72151 -18.08984 -17.67347 -17.33753 -16.53074 -16.27835 -15.98115 -15.93306 -15.53848 -15.41442 -15.14786 -15.06253 -14.80256 -14.64519 -14.60034 -14.42408 -14.13774 -13.99481 -13.70100 -13.56878 -13.54372 -13.34364 -13.09877 -12.83650 -12.56316 -12.33568 -12.25595 -12.07345 -11.75715 -11.19398 -10.67522 -10.23532 -10.04349 -9.82981 -9.53019 -8.26309 -6.40789 -0.09540 0.18083 1.34308 1.36790 1.46766 1.57676 1.77248 2.19257 2.38582 2.46399 2.80289 3.03598 3.12885 3.29116 3.42168 3.53325 3.72422 3.89193 3.97081 4.11099 4.31757 4.36016 4.39425 4.58845 4.60267 4.82088 4.84202 4.93594 5.13758 5.18138 5.27613 5.38511 5.48688 5.73237 5.75758 5.80883 6.01220 6.25296 6.59335 6.68758 7.18030 7.33732 8.80770 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.020228 B = 0.004101 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.864430 B = 6825.567861 C = 7352.585153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.598 5.598 3 C 0.261 3.739 4 C -0.544 4.544 5 H 0.050 0.950 6 C 0.011 3.989 7 N -0.926 5.926 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.475 3.525 13 O -0.587 6.587 14 C 0.108 3.892 15 H 0.119 0.881 16 N -0.798 5.798 17 C -0.032 4.032 18 C -0.127 4.127 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.072 4.072 22 C -0.168 4.168 23 C 0.505 3.495 24 F -0.177 7.177 25 F -0.159 7.159 26 F -0.185 7.185 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.001 0.999 32 H 0.268 0.732 33 H 0.351 0.649 34 H 0.348 0.652 35 H 0.101 0.899 36 H 0.152 0.848 37 H 0.174 0.826 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.356 -16.255 9.556 22.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.328 5.328 3 C 0.140 3.860 4 C -0.583 4.583 5 H 0.068 0.932 6 C -0.188 4.188 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.261 3.739 13 O -0.468 6.468 14 C -0.007 4.007 15 H 0.136 0.864 16 N -0.326 5.326 17 C -0.033 4.033 18 C -0.146 4.146 19 C -0.100 4.100 20 C -0.122 4.122 21 C -0.090 4.090 22 C -0.170 4.170 23 C 0.451 3.549 24 F -0.159 7.159 25 F -0.140 7.140 26 F -0.166 7.166 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.043 0.957 31 H 0.019 0.981 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.161 0.839 35 H 0.119 0.881 36 H 0.170 0.830 37 H 0.191 0.809 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -12.291 -16.583 9.677 22.797 hybrid contribution 1.282 1.503 -1.496 2.478 sum -11.008 -15.081 8.181 20.385 Atomic orbital electron populations 1.21918 0.78412 1.03541 1.02546 1.48188 1.07997 1.06540 1.70069 1.18780 0.90989 0.80188 0.96066 1.21656 1.37050 1.06587 0.92975 0.93208 1.25809 0.94820 0.96344 1.01867 1.70030 1.38835 1.14750 1.32937 0.85439 0.78150 0.78171 0.79194 1.18820 1.20483 1.19998 1.22076 0.88301 0.87134 0.76425 1.90657 1.16103 1.87701 1.52364 1.20622 0.97689 0.86776 0.95642 0.86407 1.59327 1.23669 1.40241 1.09355 1.18946 0.95265 0.95843 0.93217 1.21119 1.00056 0.99430 0.93975 1.21639 0.95922 0.96905 0.95564 1.21582 0.95087 0.94561 1.00934 1.21356 0.99073 0.98695 0.89835 1.19792 1.01167 1.01316 0.94732 1.18316 0.76393 0.78032 0.82155 1.93147 1.68207 1.68818 1.85688 1.93327 1.61022 1.79775 1.79896 1.93166 1.81713 1.69555 1.72167 0.91277 0.90963 0.90066 0.95651 0.98130 0.92324 0.83585 0.83885 0.88104 0.83001 0.80904 0.81874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 9.94 127.77 1.27 3.79 16 2 N -0.60 -25.40 2.86 -851.14 -2.43 -27.83 16 3 C 0.26 13.97 5.15 85.63 0.44 14.41 16 4 C -0.54 -31.42 9.39 25.60 0.24 -31.18 16 5 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 6 C 0.01 0.63 5.46 84.66 0.46 1.09 16 7 N -0.93 -55.55 13.29 21.45 0.28 -55.26 16 8 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 9 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 C 0.47 19.58 4.97 87.66 0.44 20.02 16 13 O -0.59 -29.39 15.86 -3.04 -0.05 -29.44 16 14 C 0.11 3.36 1.83 43.42 0.08 3.44 16 15 H 0.12 3.49 4.50 -2.39 -0.01 3.48 16 16 N -0.80 -23.26 6.89 -174.96 -1.20 -24.46 16 17 C -0.03 -0.85 4.89 -19.87 -0.10 -0.94 16 18 C -0.13 -3.44 9.15 22.27 0.20 -3.24 16 19 C -0.08 -1.57 10.05 22.27 0.22 -1.34 16 20 C -0.10 -1.45 10.05 22.27 0.22 -1.23 16 21 C -0.07 -1.17 9.43 22.27 0.21 -0.96 16 22 C -0.17 -3.76 5.37 -19.86 -0.11 -3.86 16 23 C 0.51 11.59 2.85 71.24 0.20 11.79 16 24 F -0.18 -3.59 15.98 44.97 0.72 -2.87 16 25 F -0.16 -4.11 14.62 44.97 0.66 -3.45 16 26 F -0.18 -4.43 15.68 44.97 0.70 -3.73 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 29 H 0.08 2.24 5.91 -2.39 -0.01 2.22 16 30 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 31 H 0.00 0.04 7.49 -2.39 -0.02 0.02 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.35 10.15 9.06 -89.70 -0.81 9.33 16 34 H 0.35 10.51 8.61 -89.69 -0.77 9.74 16 35 H 0.10 3.45 6.66 -2.91 -0.02 3.43 16 36 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 37 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16 38 H 0.16 1.82 7.16 -2.91 -0.02 1.80 16 Total: -1.00 -71.09 330.51 4.05 -67.04 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.45 Total: 21.22 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 3.79 Total: 11.77 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -3.35 Total: -107.55 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 9 Polarization: -12.13 SS G_CDS: 2.08 Total: -10.05 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -71.09 4.05 -67.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578461705.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.490 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds