Wall clock time and date at job start Tue Mar 31 2020 11:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36694 * 125.56813 * 2 1 4 4 C 1.34451 * 109.61664 * 180.02562 * 3 2 1 5 5 C 1.41634 * 107.84476 * 359.97438 * 4 3 2 6 6 C 1.37891 * 125.56884 * 180.02562 * 2 1 3 7 7 C 1.38952 * 133.34449 * 359.95822 * 6 2 1 8 8 C 1.38100 * 120.27265 * 180.02562 * 7 6 2 9 9 C 1.38241 * 120.81953 * 359.97438 * 8 7 6 10 10 C 1.39359 * 120.24270 * 0.02562 * 9 8 7 11 11 C 1.47243 * 120.32070 * 180.02562 * 10 9 8 12 12 O 1.21663 * 120.00002 * 144.88910 * 11 10 9 13 13 N 1.34774 * 119.99909 * 324.88745 * 11 10 9 14 14 C 1.36855 * 119.99945 * 186.87011 * 13 11 10 15 15 H 1.08003 * 120.00067 * 221.20318 * 14 13 11 16 16 C 1.39040 * 120.00013 * 41.20986 * 14 13 11 17 17 N 1.31370 * 120.00008 * 22.27734 * 16 14 13 18 18 Si 1.86799 * 119.99769 * 202.28019 * 16 14 13 19 19 H 1.48496 * 109.47423 * 64.99380 * 18 16 14 20 20 H 1.48504 * 109.47322 * 184.99663 * 18 16 14 21 21 H 1.48504 * 109.47089 * 304.99372 * 18 16 14 22 22 C 1.46498 * 120.00014 * 6.86974 * 13 11 10 23 23 C 1.52999 * 109.47442 * 108.95292 * 22 13 11 24 24 C 1.50699 * 109.47639 * 180.02562 * 23 22 13 25 25 O 1.20824 * 119.99558 * 359.97438 * 24 23 22 26 26 O 1.34226 * 120.00088 * 179.97438 * 24 23 22 27 27 H 1.08997 * 109.47645 * 89.97718 * 1 2 3 28 28 H 1.09007 * 109.47444 * 209.98011 * 1 2 3 29 29 H 1.09000 * 109.47366 * 329.97473 * 1 2 3 30 30 H 1.07998 * 125.19009 * 0.03018 * 3 2 1 31 31 H 1.08003 * 126.07310 * 179.97438 * 4 3 2 32 32 H 1.08006 * 119.86843 * 0.28893 * 7 6 2 33 33 H 1.07996 * 119.59274 * 180.02562 * 8 7 6 34 34 H 1.07992 * 119.87911 * 180.02562 * 9 8 7 35 35 H 0.97001 * 119.99570 * 184.95801 * 17 16 14 36 36 H 1.09002 * 109.47343 * 228.95287 * 22 13 11 37 37 H 1.09004 * 109.47175 * 348.94969 * 22 13 11 38 38 H 1.09002 * 109.46847 * 300.00299 * 23 22 13 39 39 H 1.09004 * 109.47199 * 59.99692 * 23 22 13 40 40 H 0.96699 * 116.99859 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2601 1.1119 0.0000 4 6 3.5529 0.7424 -0.0006 5 6 3.5996 -0.6732 -0.0003 6 6 2.2671 -1.1216 -0.0005 7 6 1.9999 -2.4852 -0.0004 8 6 3.0364 -3.3977 -0.0005 9 6 4.3525 -2.9747 -0.0012 10 6 4.6523 -1.6137 -0.0014 11 6 6.0534 -1.1612 -0.0028 12 8 6.3668 -0.1539 -0.6090 13 7 6.9888 -1.8627 0.6675 14 6 8.2602 -1.3701 0.7847 15 1 9.1075 -2.0314 0.6785 16 6 8.4612 -0.0183 1.0406 17 7 7.5062 0.6947 1.5932 18 14 10.0892 0.7839 0.5986 19 1 10.2668 0.7640 -0.8756 20 1 10.0952 2.1891 1.0790 21 1 11.2000 0.0365 1.2411 22 6 6.6445 -3.1526 1.2707 23 6 7.3159 -4.2794 0.4831 24 6 6.9613 -5.6064 1.1031 25 8 6.2454 -5.6466 2.0756 26 8 7.4407 -6.7435 0.5751 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5142 30 1 1.9042 2.1316 0.0005 31 1 4.4042 1.4070 -0.0011 32 1 0.9774 -2.8330 -0.0045 33 1 2.8162 -4.4550 -0.0008 34 1 5.1513 -3.7015 -0.0017 35 1 7.6187 1.6515 1.7060 36 1 6.9914 -3.1748 2.3038 37 1 5.5631 -3.2874 1.2476 38 1 6.9690 -4.2572 -0.5500 39 1 8.3973 -4.1446 0.5061 40 1 7.1860 -7.5699 1.0077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600977729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:13 Heat of formation + Delta-G solvation = -45.507988 kcal Electronic energy + Delta-G solvation = -26735.642386 eV Core-core repulsion = 22902.801765 eV Total energy + Delta-G solvation = -3832.840621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.44159 -41.31403 -40.25632 -37.66355 -37.14634 -36.41378 -34.32735 -33.79773 -31.79740 -31.41004 -29.81272 -27.36892 -26.88115 -25.75489 -23.92006 -22.70199 -22.19924 -21.76464 -20.59948 -19.09529 -18.57865 -17.99104 -17.91610 -17.40053 -16.92691 -16.75371 -16.33528 -16.24993 -15.99380 -15.82272 -15.34400 -14.74112 -14.46195 -14.33407 -13.98689 -13.87902 -13.65846 -13.56610 -13.34849 -13.07360 -12.99155 -12.82774 -12.73025 -12.51462 -12.40433 -12.26349 -12.17283 -12.12788 -11.59047 -11.43858 -10.78932 -10.54223 -10.04252 -9.24132 -9.03770 -8.46304 -8.21962 -5.97573 -0.05502 0.65496 1.25620 1.38603 1.48260 1.51539 1.83836 1.95402 2.08310 2.28418 2.51031 2.98033 3.27685 3.35693 3.85025 3.95123 3.98894 4.01797 4.06498 4.12936 4.26009 4.41786 4.52491 4.55079 4.63182 4.68712 4.76218 4.79401 4.84287 4.89968 5.06326 5.14441 5.25952 5.48151 5.53514 5.62990 5.66800 5.80479 5.82928 6.18236 6.27136 6.50093 6.99635 7.08040 7.21293 7.61016 8.31631 8.85189 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.006348 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.496918 B = 4410.085071 C = 7054.151979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.481 5.481 3 C 0.065 3.935 4 C -0.231 4.231 5 C -0.098 4.098 6 C 0.070 3.930 7 C -0.106 4.106 8 C -0.108 4.108 9 C -0.142 4.142 10 C -0.099 4.099 11 C 0.510 3.490 12 O -0.586 6.586 13 N -0.455 5.455 14 C -0.365 4.365 15 H 0.094 0.906 16 C 0.022 3.978 17 N -0.867 5.867 18 Si 0.970 3.030 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.252 1.252 22 C 0.081 3.919 23 C -0.124 4.124 24 C 0.499 3.501 25 O -0.542 6.542 26 O -0.508 6.508 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.207 0.793 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.259 0.741 36 H 0.049 0.951 37 H 0.114 0.886 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 -10.197 -2.639 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.163 5.163 3 C -0.062 4.062 4 C -0.256 4.256 5 C -0.104 4.104 6 C -0.037 4.037 7 C -0.126 4.126 8 C -0.127 4.127 9 C -0.162 4.162 10 C -0.103 4.103 11 C 0.301 3.699 12 O -0.469 6.469 13 N -0.175 5.175 14 C -0.491 4.491 15 H 0.111 0.889 16 C -0.185 4.185 17 N -0.502 5.502 18 Si 0.795 3.205 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.175 1.175 22 C -0.042 4.042 23 C -0.163 4.163 24 C 0.342 3.658 25 O -0.433 6.433 26 O -0.321 6.321 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.224 0.776 31 H 0.124 0.876 32 H 0.178 0.822 33 H 0.183 0.817 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -14.290 -9.150 -2.711 17.184 hybrid contribution 1.223 0.590 0.326 1.397 sum -13.067 -8.560 -2.386 15.802 Atomic orbital electron populations 1.22285 0.73676 1.06039 1.04445 1.44130 1.07371 1.03163 1.61658 1.22239 0.88727 0.92937 1.02288 1.20739 0.97046 0.94316 1.13511 1.18379 0.92745 0.94152 1.05077 1.18467 0.88740 0.90116 1.06346 1.20438 1.01146 0.87766 1.03285 1.21085 0.90527 1.00796 1.00293 1.21692 0.98875 0.93327 1.02296 1.19852 0.92495 0.94437 1.03562 1.18390 0.85570 0.85152 0.80800 1.90523 1.82135 1.27806 1.46402 1.43275 1.09742 1.18009 1.46448 1.19344 0.83701 0.94347 1.51751 0.88862 1.26100 1.01023 0.98388 0.92979 1.70023 1.36918 1.06840 1.36429 0.85381 0.79484 0.77306 0.78373 1.20849 1.21552 1.17549 1.22238 1.02467 0.83523 0.95957 1.21621 1.05190 0.87609 1.01846 1.23106 0.75558 0.86435 0.80674 1.90717 1.36853 1.88242 1.27447 1.84508 1.70411 1.17874 1.59355 0.89784 0.88587 0.87718 0.77631 0.87570 0.82169 0.81733 0.83765 0.93148 0.93241 0.86892 0.86580 0.86696 0.70946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 11.08 127.77 1.42 2.45 16 2 N -0.48 -13.09 3.19 -539.26 -1.72 -14.81 16 3 C 0.06 2.03 11.33 83.07 0.94 2.98 16 4 C -0.23 -10.31 10.22 22.24 0.23 -10.08 16 5 C -0.10 -4.42 5.96 -21.15 -0.13 -4.54 16 6 C 0.07 2.38 6.82 38.94 0.27 2.64 16 7 C -0.11 -2.86 9.98 22.41 0.22 -2.63 16 8 C -0.11 -3.05 9.99 22.24 0.22 -2.83 16 9 C -0.14 -5.28 7.43 22.54 0.17 -5.11 16 10 C -0.10 -4.73 5.54 -19.92 -0.11 -4.84 16 11 C 0.51 28.88 6.51 86.61 0.56 29.44 16 12 O -0.59 -38.06 14.04 -4.23 -0.06 -38.12 16 13 N -0.45 -24.16 2.60 -639.46 -1.66 -25.82 16 14 C -0.36 -20.65 8.93 84.10 0.75 -19.90 16 15 H 0.09 4.85 7.39 -2.91 -0.02 4.83 16 16 C 0.02 1.28 4.25 84.95 0.36 1.64 16 17 N -0.87 -54.89 11.99 21.68 0.26 -54.63 16 18 Si 0.97 46.83 29.61 68.60 2.03 48.86 16 19 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.25 -10.96 7.11 99.48 0.71 -10.25 16 22 C 0.08 3.44 4.20 86.38 0.36 3.80 16 23 C -0.12 -4.01 5.16 29.85 0.15 -3.86 16 24 C 0.50 13.82 8.33 71.24 0.59 14.41 16 25 O -0.54 -17.95 16.74 21.97 0.37 -17.59 16 26 O -0.51 -10.04 13.42 -51.38 -0.69 -10.73 16 27 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.21 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.11 5.59 7.64 -2.91 -0.02 5.57 16 32 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 33 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.15 4.96 3.89 -2.91 -0.01 4.94 16 35 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 36 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 37 H 0.11 4.61 3.42 -6.42 -0.02 4.59 16 38 H 0.12 3.47 7.46 -2.39 -0.02 3.45 16 39 H 0.11 3.70 7.50 -2.39 -0.02 3.69 16 40 H 0.43 4.24 9.10 -74.06 -0.67 3.56 16 Total: -1.00 -89.62 340.06 4.95 -84.66 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.42 Total: 24.61 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 6.01 Total: 3.58 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -3.13 Total: -95.27 kcal Atomic # 8 Polarization: -66.06 SS G_CDS: -0.38 Total: -66.44 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -89.62 4.95 -84.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600977729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.157 kcal (2) G-P(sol) polarization free energy of solvation -89.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds