Wall clock time and date at job start Tue Mar 31 2020 10:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47611 * 2 1 4 4 C 1.53004 * 109.46793 * 120.00538 * 2 1 3 5 5 N 1.46505 * 109.46814 * 174.99925 * 4 2 1 6 6 C 1.34779 * 119.99727 * 180.02562 * 5 4 2 7 7 O 1.21606 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.47328 * 119.99857 * 180.02562 * 6 5 4 9 9 C 1.35390 * 118.73538 * 179.97438 * 8 6 5 10 10 C 1.46493 * 119.22928 * 180.02562 * 9 8 6 11 11 C 1.39400 * 122.09177 * 179.97438 * 10 9 8 12 12 C 1.37918 * 119.48872 * 179.97438 * 11 10 9 13 13 C 1.38764 * 120.70734 * 0.04794 * 12 11 10 14 14 C 1.37990 * 120.74154 * 359.97438 * 13 12 11 15 15 C 1.39157 * 119.53889 * 359.97438 * 14 13 12 16 16 C 1.47041 * 122.06909 * 179.97438 * 15 14 13 17 17 O 1.21625 * 120.34433 * 0.02562 * 16 15 14 18 18 O 1.34404 * 119.31814 * 180.02562 * 16 15 14 19 19 N 1.46504 * 109.46882 * 239.99869 * 2 1 3 20 20 C 1.36933 * 119.99666 * 85.00282 * 19 2 1 21 21 H 1.08001 * 119.99957 * 0.02562 * 20 19 2 22 22 C 1.38815 * 119.99967 * 179.97438 * 20 19 2 23 23 N 1.31620 * 120.00124 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 119.99840 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47294 * 89.99850 * 24 22 20 26 26 H 1.48509 * 109.46937 * 209.99770 * 24 22 20 27 27 H 1.48499 * 109.47087 * 329.99837 * 24 22 20 28 28 H 1.08996 * 109.47611 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47068 * 300.00169 * 1 2 3 30 30 H 1.08999 * 109.46861 * 59.99542 * 1 2 3 31 31 H 1.08991 * 109.47427 * 54.99811 * 4 2 1 32 32 H 1.08998 * 109.46826 * 294.99453 * 4 2 1 33 33 H 0.96996 * 119.99774 * 359.97438 * 5 4 2 34 34 H 1.08005 * 120.38614 * 359.97438 * 9 8 6 35 35 H 1.08004 * 120.25486 * 0.04952 * 11 10 9 36 36 H 1.08005 * 119.64624 * 180.02562 * 12 11 10 37 37 H 1.08008 * 119.63008 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.23454 * 179.97438 * 14 13 12 39 39 H 0.96998 * 120.00271 * 265.00206 * 19 2 1 40 40 H 0.96997 * 119.99963 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.1729 -1.4295 2.1906 7 8 3.5682 -1.8858 3.1419 8 6 5.6413 -1.5347 2.1319 9 6 6.2914 -2.1450 3.1507 10 6 7.7514 -2.2552 3.1037 11 6 8.4808 -2.8707 4.1198 12 6 9.8543 -2.9451 4.0202 13 6 10.5150 -2.4136 2.9217 14 6 9.8123 -1.7997 1.9051 15 6 8.4256 -1.7141 1.9841 16 6 7.6220 -1.0719 0.9334 17 8 8.1610 -0.5928 -0.0460 18 8 6.2855 -1.0197 1.0665 19 7 2.0183 -0.6907 -1.1962 20 6 2.1491 -0.0075 -2.3757 21 1 1.8927 1.0405 -2.4240 22 6 2.6122 -0.6617 -3.5090 23 7 2.7384 -0.0050 -4.6427 24 14 3.0564 -2.4742 -3.4252 25 1 1.8592 -3.2926 -3.7451 26 1 4.1322 -2.7661 -4.4065 27 1 3.5309 -2.8048 -2.0574 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -1.7199 1.2951 32 1 1.7516 -0.1585 2.1369 33 1 3.9823 -0.4629 0.4316 34 1 5.7400 -2.5453 3.9888 35 1 7.9740 -3.2873 4.9778 36 1 10.4219 -3.4218 4.8057 37 1 11.5912 -2.4811 2.8618 38 1 10.3348 -1.3884 1.0541 39 1 2.2490 -1.6318 -1.1527 40 1 3.0624 -0.4620 -5.4345 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752875177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:27 Heat of formation + Delta-G solvation = -72.607835 kcal Electronic energy + Delta-G solvation = -25632.399598 eV Core-core repulsion = 21798.383839 eV Total energy + Delta-G solvation = -3834.015759 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.95597 -40.92424 -39.74539 -39.10727 -38.15208 -35.42774 -34.37300 -33.82221 -32.45685 -31.54966 -30.96789 -27.73274 -26.04046 -25.71981 -25.16038 -23.37398 -22.34913 -21.86097 -20.23886 -20.12684 -19.49114 -18.91348 -18.08856 -17.54624 -17.26283 -17.03642 -16.55804 -16.23953 -16.01218 -15.63502 -15.51506 -15.20558 -14.78976 -14.67326 -14.49753 -14.20898 -14.01206 -13.96627 -13.78155 -13.47250 -13.30658 -12.99322 -12.89017 -12.55192 -12.34313 -12.18327 -11.97785 -11.83814 -11.70737 -11.29573 -11.22886 -11.04450 -10.28775 -10.26668 -9.37677 -9.36413 -8.04216 -5.37225 -0.92060 -0.43103 0.61344 0.98738 1.19838 1.32877 1.35432 1.41633 1.86741 1.93830 2.44565 2.69019 2.70088 3.22116 3.29906 3.49566 3.54289 3.74423 3.77342 3.87092 4.15570 4.18277 4.31048 4.36283 4.50628 4.57130 4.63394 4.69027 4.78506 4.89234 5.01215 5.08570 5.17694 5.23507 5.24065 5.30749 5.53089 5.72015 5.77448 5.81859 6.07378 6.19606 6.32735 6.81646 7.05675 7.80626 7.97882 9.17280 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014587 B = 0.003856 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.060182 B = 7258.787888 C = 8560.872770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.159 3.841 3 H 0.057 0.943 4 C 0.117 3.883 5 N -0.705 5.705 6 C 0.575 3.425 7 O -0.540 6.540 8 C 0.016 3.984 9 C -0.091 4.091 10 C -0.034 4.034 11 C -0.096 4.096 12 C -0.068 4.068 13 C -0.111 4.111 14 C -0.062 4.062 15 C -0.190 4.190 16 C 0.515 3.485 17 O -0.489 6.489 18 O -0.288 6.288 19 N -0.750 5.750 20 C -0.221 4.221 21 H 0.063 0.937 22 C -0.058 4.058 23 N -0.981 5.981 24 Si 0.944 3.056 25 H -0.277 1.277 26 H -0.302 1.302 27 H -0.259 1.259 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.412 0.588 34 H 0.193 0.807 35 H 0.174 0.826 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.137 0.863 39 H 0.363 0.637 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.857 -8.186 25.396 30.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.051 3.949 3 H 0.075 0.925 4 C -0.007 4.007 5 N -0.354 5.354 6 C 0.360 3.640 7 O -0.420 6.420 8 C -0.030 4.030 9 C -0.111 4.111 10 C -0.035 4.035 11 C -0.113 4.113 12 C -0.086 4.086 13 C -0.129 4.129 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.363 3.637 17 O -0.378 6.378 18 O -0.200 6.200 19 N -0.394 5.394 20 C -0.352 4.352 21 H 0.081 0.919 22 C -0.250 4.250 23 N -0.632 5.632 24 Si 0.773 3.227 25 H -0.203 1.203 26 H -0.229 1.229 27 H -0.184 1.184 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.248 0.752 34 H 0.210 0.790 35 H 0.192 0.808 36 H 0.196 0.804 37 H 0.186 0.814 38 H 0.155 0.845 39 H 0.196 0.804 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.506 -7.975 25.284 29.754 hybrid contribution 0.342 -0.450 -1.620 1.715 sum 13.847 -8.425 23.665 28.683 Atomic orbital electron populations 1.22193 0.95595 1.01967 1.01654 1.20724 0.94274 0.95692 0.84182 0.92482 1.21870 0.78009 1.01926 0.98865 1.46113 1.09248 1.57044 1.22979 1.17453 0.84572 0.78882 0.83045 1.90821 1.67503 1.49900 1.33786 1.21392 0.91399 1.02097 0.88142 1.22692 0.93136 0.97006 0.98313 1.19170 0.91926 0.97819 0.94550 1.21664 0.94731 0.97185 0.97735 1.21979 0.93985 0.94827 0.97800 1.21770 1.02316 0.96188 0.92607 1.21319 0.90809 0.96012 0.99862 1.20241 0.96076 1.06736 0.96103 1.21000 0.78646 0.77556 0.86469 1.90919 1.66933 1.46717 1.33222 1.83294 1.25163 1.68608 1.42937 1.42834 1.79933 1.09579 1.07098 1.18990 1.34740 0.94540 0.86973 0.91874 1.25362 1.02551 1.01669 0.95425 1.69855 1.54747 1.37441 1.01145 0.85572 0.77580 0.81964 0.77605 1.20276 1.22935 1.18388 0.92635 0.90139 0.94126 0.90746 0.88248 0.75212 0.78998 0.80823 0.80443 0.81386 0.84472 0.80366 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 9.49 71.98 0.68 -4.04 16 2 C 0.16 5.54 3.05 44.99 0.14 5.67 16 3 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 4 C 0.12 3.41 5.23 86.38 0.45 3.87 16 5 N -0.70 -22.58 5.38 -466.47 -2.51 -25.09 16 6 C 0.57 17.42 7.77 86.63 0.67 18.09 16 7 O -0.54 -16.95 16.15 -4.05 -0.07 -17.02 16 8 C 0.02 0.45 6.86 24.01 0.16 0.62 16 9 C -0.09 -1.89 9.52 23.76 0.23 -1.67 16 10 C -0.03 -0.63 5.89 -20.05 -0.12 -0.75 16 11 C -0.10 -0.94 9.88 22.47 0.22 -0.72 16 12 C -0.07 -0.44 10.01 22.32 0.22 -0.22 16 13 C -0.11 -1.07 10.01 22.34 0.22 -0.85 16 14 C -0.06 -1.12 9.66 22.43 0.22 -0.90 16 15 C -0.19 -4.51 5.90 -19.96 -0.12 -4.63 16 16 C 0.51 16.92 8.19 70.13 0.57 17.50 16 17 O -0.49 -19.26 17.39 19.43 0.34 -18.92 16 18 O -0.29 -9.64 8.98 15.74 0.14 -9.50 16 19 N -0.75 -33.60 4.36 -322.93 -1.41 -35.01 16 20 C -0.22 -12.37 10.41 84.03 0.87 -11.49 16 21 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 22 C -0.06 -3.47 5.50 84.86 0.47 -3.01 16 23 N -0.98 -63.79 13.97 21.65 0.30 -63.49 16 24 Si 0.94 47.07 27.74 68.60 1.90 48.97 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 26 H -0.30 -15.57 7.11 99.48 0.71 -14.87 16 27 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 28 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 33 H 0.41 14.77 7.47 -92.71 -0.69 14.07 16 34 H 0.19 3.04 7.47 -2.91 -0.02 3.02 16 35 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.18 -0.24 8.06 -2.91 -0.02 -0.27 16 37 H 0.17 0.54 8.06 -2.91 -0.02 0.51 16 38 H 0.14 2.56 7.80 -2.91 -0.02 2.54 16 39 H 0.36 16.13 5.66 -92.71 -0.52 15.61 16 40 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -78.14 349.81 3.42 -74.71 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.18 Total: 27.86 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 4.90 Total: 17.48 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -3.62 Total: -123.59 kcal Atomic # 8 Polarization: -45.85 SS G_CDS: 0.41 Total: -45.44 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.90 Total: 48.97 kcal Total: -78.14 3.42 -74.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752875177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.106 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds