Wall clock time and date at job start Tue Mar 31 2020 10:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46981 * 2 1 4 4 C 1.53005 * 109.46947 * 240.00182 * 2 1 3 5 5 N 1.46505 * 109.46833 * 184.99856 * 4 2 1 6 6 C 1.34780 * 119.99743 * 179.97438 * 5 4 2 7 7 O 1.21606 * 120.00097 * 359.97438 * 6 5 4 8 8 C 1.47328 * 119.99875 * 180.02562 * 6 5 4 9 9 C 1.35390 * 118.73556 * 180.02562 * 8 6 5 10 10 C 1.46493 * 119.22928 * 179.97438 * 9 8 6 11 11 C 1.39400 * 122.09177 * 179.97438 * 10 9 8 12 12 C 1.37918 * 119.48872 * 179.97438 * 11 10 9 13 13 C 1.38764 * 120.70734 * 0.04794 * 12 11 10 14 14 C 1.37990 * 120.74154 * 359.97438 * 13 12 11 15 15 C 1.39157 * 119.53889 * 359.97438 * 14 13 12 16 16 C 1.47041 * 122.06909 * 179.97438 * 15 14 13 17 17 O 1.21625 * 120.34433 * 0.02562 * 16 15 14 18 18 O 1.34404 * 119.31814 * 180.02562 * 16 15 14 19 19 N 1.46494 * 109.47374 * 120.00328 * 2 1 3 20 20 C 1.36940 * 119.99814 * 275.00543 * 19 2 1 21 21 H 1.08001 * 119.99994 * 359.97438 * 20 19 2 22 22 C 1.38812 * 120.00031 * 180.02562 * 20 19 2 23 23 N 1.31618 * 119.99851 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00155 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.46952 * 89.99531 * 24 22 20 26 26 H 1.48491 * 109.46941 * 209.99538 * 24 22 20 27 27 H 1.48496 * 109.46948 * 329.99517 * 24 22 20 28 28 H 1.09000 * 109.46981 * 300.00153 * 1 2 3 29 29 H 1.09009 * 109.46700 * 60.00003 * 1 2 3 30 30 H 1.08995 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47189 * 65.00514 * 4 2 1 32 32 H 1.09000 * 109.46893 * 304.99862 * 4 2 1 33 33 H 0.96996 * 119.99766 * 0.02562 * 5 4 2 34 34 H 1.08004 * 120.38593 * 359.97438 * 9 8 6 35 35 H 1.08004 * 120.25508 * 0.02562 * 11 10 9 36 36 H 1.08005 * 119.64624 * 180.02562 * 12 11 10 37 37 H 1.07998 * 119.62974 * 179.97438 * 13 12 11 38 38 H 1.08004 * 120.23454 * 179.97438 * 14 13 12 39 39 H 0.97005 * 120.00148 * 94.99432 * 19 2 1 40 40 H 0.96996 * 120.00231 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.1730 -1.4291 -2.1908 7 8 3.5682 -1.8862 -3.1417 8 6 5.6413 -1.5353 -2.1316 9 6 6.2914 -2.1454 -3.1504 10 6 7.7513 -2.2565 -3.1029 11 6 8.4806 -2.8729 -4.1185 12 6 9.8542 -2.9472 -4.0189 13 6 10.5147 -2.4165 -2.9200 14 6 9.8120 -1.8026 -1.9034 15 6 8.4255 -1.7153 -1.9833 16 6 7.6218 -1.0740 -0.9322 17 8 8.1606 -0.5965 0.0480 18 8 6.2854 -1.0209 -1.0658 19 7 2.0184 -0.6906 1.1961 20 6 2.1491 -0.0075 2.3757 21 1 1.8925 1.0404 2.4242 22 6 2.6123 -0.6618 3.5089 23 7 2.9255 -1.9388 3.4497 24 14 2.7913 0.2702 5.1180 25 1 1.5239 0.1789 5.8864 26 1 3.8962 -0.3230 5.9132 27 1 3.0961 1.6953 4.8332 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.7517 -0.1582 -2.1370 32 1 1.6053 -1.7198 -1.2952 33 1 3.9823 -0.4628 -0.4316 34 1 5.7401 -2.5456 -3.9885 35 1 7.9740 -3.2883 -4.9771 36 1 10.4218 -3.4238 -4.8045 37 1 11.5909 -2.4847 -2.8597 38 1 10.3344 -1.3928 -1.0516 39 1 2.2490 -1.6319 1.1525 40 1 3.2489 -2.3961 4.2417 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752875178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:31 Heat of formation + Delta-G solvation = -75.324388 kcal Electronic energy + Delta-G solvation = -25518.936277 eV Core-core repulsion = 21684.802719 eV Total energy + Delta-G solvation = -3834.133558 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.92752 -40.87901 -39.72388 -39.07197 -38.00332 -35.36561 -34.34770 -33.69369 -32.43559 -31.33234 -30.51397 -27.70507 -26.05016 -25.81299 -25.30858 -23.35216 -22.32000 -21.77157 -20.17076 -19.85584 -19.27584 -18.88204 -18.05410 -17.52816 -17.25250 -16.88037 -16.53596 -16.25927 -15.82960 -15.59369 -15.53389 -15.26171 -14.86131 -14.65383 -14.23925 -14.03862 -13.96797 -13.85517 -13.67412 -13.42066 -13.10217 -12.97040 -12.80472 -12.51351 -12.32429 -12.22382 -11.95402 -11.73152 -11.68077 -11.27350 -11.19354 -10.98135 -10.26039 -10.22493 -9.33949 -9.04583 -7.94358 -5.22927 -0.89464 -0.41072 0.63477 1.01948 1.22434 1.46050 1.47810 1.55313 1.89086 1.99624 2.55391 2.71143 2.72423 3.26465 3.41226 3.51845 3.76511 3.79572 3.87517 3.94031 4.17237 4.19925 4.37155 4.38965 4.52346 4.61344 4.65210 4.71596 4.81696 4.90956 5.06693 5.10659 5.21200 5.25270 5.27468 5.32121 5.53239 5.55771 5.73895 5.84966 6.10417 6.26716 6.37486 6.86036 7.34064 8.06961 8.29879 9.28513 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.014097 B = 0.003638 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.720820 B = 7694.871164 C = 9334.875582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.155 3.845 3 H 0.057 0.943 4 C 0.119 3.881 5 N -0.699 5.699 6 C 0.573 3.427 7 O -0.544 6.544 8 C 0.020 3.980 9 C -0.094 4.094 10 C -0.034 4.034 11 C -0.096 4.096 12 C -0.068 4.068 13 C -0.111 4.111 14 C -0.061 4.061 15 C -0.190 4.190 16 C 0.515 3.485 17 O -0.490 6.490 18 O -0.287 6.287 19 N -0.734 5.734 20 C -0.234 4.234 21 H 0.078 0.922 22 C -0.073 4.073 23 N -0.967 5.967 24 Si 0.966 3.034 25 H -0.287 1.287 26 H -0.302 1.302 27 H -0.270 1.270 28 H 0.043 0.957 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.412 0.588 34 H 0.192 0.808 35 H 0.174 0.826 36 H 0.179 0.821 37 H 0.169 0.831 38 H 0.138 0.862 39 H 0.372 0.628 40 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.428 -1.840 -21.342 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.075 0.925 4 C -0.004 4.004 5 N -0.347 5.347 6 C 0.359 3.641 7 O -0.425 6.425 8 C -0.027 4.027 9 C -0.114 4.114 10 C -0.034 4.034 11 C -0.114 4.114 12 C -0.086 4.086 13 C -0.129 4.129 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.364 3.636 17 O -0.379 6.379 18 O -0.199 6.199 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.096 0.904 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.796 3.204 25 H -0.214 1.214 26 H -0.229 1.229 27 H -0.195 1.195 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.248 0.752 34 H 0.209 0.791 35 H 0.191 0.809 36 H 0.196 0.804 37 H 0.187 0.813 38 H 0.156 0.844 39 H 0.204 0.796 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.088 -1.647 -21.243 25.005 hybrid contribution 0.164 0.258 2.101 2.123 sum 13.252 -1.389 -19.142 23.323 Atomic orbital electron populations 1.22213 0.96139 1.01408 1.01543 1.20746 0.94042 0.95585 0.84954 0.92494 1.21808 0.78156 1.01456 0.99013 1.46056 1.09120 1.56792 1.22740 1.17488 0.84662 0.78889 0.83092 1.90809 1.67577 1.50030 1.34059 1.21376 0.91344 1.01974 0.87986 1.22678 0.93200 0.97182 0.98381 1.19172 0.91861 0.97775 0.94601 1.21659 0.94769 0.97221 0.97739 1.21977 0.93923 0.94829 0.97834 1.21767 1.02317 0.96214 0.92586 1.21319 0.90750 0.96033 0.99869 1.20245 0.96113 1.06757 0.96059 1.21000 0.78635 0.77529 0.86469 1.90903 1.66961 1.46870 1.33148 1.83301 1.25187 1.68508 1.42894 1.42619 1.78415 1.10309 1.06155 1.19565 1.34751 0.94183 0.88115 0.90389 1.25473 1.03016 0.96761 1.01259 1.69808 1.52555 1.10188 1.29191 0.85249 0.76668 0.78173 0.80354 1.21418 1.22889 1.19466 0.93759 0.90369 0.93588 0.88572 0.91742 0.75212 0.79110 0.80873 0.80391 0.81308 0.84427 0.79575 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 9.49 71.98 0.68 -4.30 16 2 C 0.16 5.74 3.05 44.99 0.14 5.88 16 3 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 4 C 0.12 3.90 5.23 86.38 0.45 4.35 16 5 N -0.70 -24.61 5.38 -466.46 -2.51 -27.12 16 6 C 0.57 19.12 7.77 86.63 0.67 19.79 16 7 O -0.54 -18.78 16.15 -4.05 -0.07 -18.85 16 8 C 0.02 0.60 6.86 24.01 0.16 0.77 16 9 C -0.09 -2.16 9.52 23.76 0.23 -1.94 16 10 C -0.03 -0.68 5.89 -20.05 -0.12 -0.80 16 11 C -0.10 -1.08 9.88 22.47 0.22 -0.86 16 12 C -0.07 -0.52 10.01 22.32 0.22 -0.29 16 13 C -0.11 -1.18 10.02 22.34 0.22 -0.96 16 14 C -0.06 -1.19 9.66 22.43 0.22 -0.97 16 15 C -0.19 -4.81 5.90 -19.96 -0.12 -4.93 16 16 C 0.52 17.85 8.19 70.13 0.57 18.42 16 17 O -0.49 -19.99 17.39 19.43 0.34 -19.65 16 18 O -0.29 -10.29 8.98 15.74 0.14 -10.14 16 19 N -0.73 -35.68 4.56 -322.94 -1.47 -37.15 16 20 C -0.23 -12.76 9.93 84.03 0.83 -11.92 16 21 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 22 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 23 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 24 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.41 16.16 7.47 -92.71 -0.69 15.47 16 34 H 0.19 3.47 7.47 -2.91 -0.02 3.45 16 35 H 0.17 0.83 8.06 -2.91 -0.02 0.80 16 36 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.17 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.14 2.70 7.80 -2.91 -0.02 2.68 16 39 H 0.37 19.91 7.80 -92.70 -0.72 19.18 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -74.97 352.92 3.28 -71.68 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.32 Total: 33.20 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: 4.86 Total: 18.52 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -3.70 Total: -123.95 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: 0.41 Total: -48.65 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -74.97 3.28 -71.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752875178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.642 kcal (2) G-P(sol) polarization free energy of solvation -74.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds