Wall clock time and date at job start Tue Mar 31 2020 10:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47370 * 2 1 4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3 5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2 7 7 O 1.21553 * 120.00289 * 359.72074 * 6 5 4 8 8 C 1.47846 * 119.99557 * 179.72375 * 6 5 4 9 9 C 1.39575 * 120.14570 * 359.72055 * 8 6 5 10 10 C 1.37955 * 119.85022 * 179.78726 * 9 8 6 11 11 C 1.38362 * 120.14738 * 0.49095 * 10 9 8 12 12 C 1.50698 * 119.85279 * 179.76145 * 11 10 9 13 13 F 1.39901 * 109.47405 * 269.97290 * 12 11 10 14 14 F 1.39899 * 109.47497 * 29.98245 * 12 11 10 15 15 F 1.39906 * 109.47095 * 149.97868 * 12 11 10 16 16 C 1.38361 * 120.29120 * 359.74322 * 11 10 9 17 17 C 1.37957 * 120.14182 * 0.02562 * 16 11 10 18 18 N 1.46506 * 109.47091 * 239.99845 * 2 1 3 19 19 C 1.36929 * 119.99909 * 85.00050 * 18 2 1 20 20 H 1.08006 * 120.00094 * 0.02562 * 19 18 2 21 21 C 1.38816 * 120.00176 * 180.02562 * 19 18 2 22 22 N 1.31615 * 119.99668 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47263 * 59.99982 * 23 21 19 25 25 H 1.48501 * 109.46944 * 180.02562 * 23 21 19 26 26 H 1.48508 * 109.47333 * 300.00103 * 23 21 19 27 27 H 1.09001 * 109.47386 * 300.00185 * 1 2 3 28 28 H 1.08998 * 109.47347 * 59.99643 * 1 2 3 29 29 H 1.08998 * 109.47557 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46730 * 54.99604 * 4 2 1 31 31 H 1.08998 * 109.46846 * 295.00148 * 4 2 1 32 32 H 0.97001 * 119.99790 * 359.97438 * 5 4 2 33 33 H 1.08001 * 120.07522 * 0.02562 * 9 8 6 34 34 H 1.08007 * 119.92736 * 180.22839 * 10 9 8 35 35 H 1.07995 * 119.92745 * 180.02562 * 16 11 10 36 36 H 1.08008 * 120.06811 * 179.97438 * 17 16 11 37 37 H 0.97002 * 119.99781 * 265.00262 * 18 2 1 38 38 H 0.96996 * 119.99816 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1725 -1.4338 2.1883 7 8 3.5680 -1.8898 3.1392 8 6 5.6454 -1.5453 2.1261 9 6 6.3420 -1.0279 1.0328 10 6 7.7168 -1.1314 0.9832 11 6 8.4042 -1.7555 2.0091 12 6 9.9055 -1.8696 1.9454 13 9 10.2557 -3.0605 1.3001 14 9 10.4261 -0.7832 1.2342 15 9 10.4285 -1.8712 3.2430 16 6 7.7193 -2.2748 3.0933 17 6 6.3449 -2.1737 3.1575 18 7 2.0183 -0.6907 -1.1962 19 6 2.1491 -0.0076 -2.3757 20 1 1.8926 1.0405 -2.4241 21 6 2.6113 -0.6621 -3.5093 22 7 2.9233 -1.9394 -3.4504 23 14 2.7903 0.2700 -5.1182 24 1 3.7464 1.3917 -4.9367 25 1 3.2980 -0.6488 -6.1686 26 1 1.4683 0.8079 -5.5285 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.6052 -1.7199 1.2952 31 1 1.7516 -0.1583 2.1370 32 1 3.9823 -0.4629 0.4315 33 1 5.8063 -0.5441 0.2295 34 1 8.2574 -0.7282 0.1395 35 1 8.2617 -2.7604 3.8909 36 1 5.8114 -2.5800 4.0043 37 1 2.2490 -1.6319 -1.1526 38 1 3.2466 -2.3966 -4.2424 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752913231.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:45 Heat of formation + Delta-G solvation = -171.625327 kcal Electronic energy + Delta-G solvation = -25758.250427 eV Core-core repulsion = 21378.084207 eV Total energy + Delta-G solvation = -4380.166220 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.21851 -48.72612 -48.68439 -41.37645 -39.64605 -37.90253 -35.31076 -33.92006 -33.06209 -32.20808 -30.54920 -28.21675 -26.68558 -25.60506 -24.02290 -23.68297 -21.75412 -21.41641 -19.73504 -19.53334 -19.41333 -19.36185 -18.63874 -17.33757 -16.89830 -16.32186 -16.11925 -15.91437 -15.64876 -15.56485 -15.48581 -15.36704 -15.13402 -14.95746 -14.89026 -14.83171 -14.56574 -14.25804 -14.02758 -13.77259 -13.65631 -13.36414 -13.06128 -12.77888 -12.73409 -12.49769 -12.34991 -12.21899 -11.70504 -11.65101 -11.16077 -10.93408 -10.48456 -10.22422 -10.04013 -9.01667 -7.90124 -5.19286 -0.63971 0.14095 1.51961 1.53170 1.55880 1.57619 1.58946 2.12427 2.55539 2.59117 2.62052 2.94409 3.35257 3.43957 3.59055 3.68541 3.74948 3.89997 3.98717 4.08653 4.21380 4.39897 4.45360 4.64539 4.73893 4.78999 4.83596 4.95752 4.98222 5.07849 5.13903 5.26574 5.35212 5.52430 5.58367 5.58823 6.30178 6.47816 7.08842 7.38191 8.09879 8.34584 9.32117 Molecular weight = 316.11amu Principal moments of inertia in cm(-1) A = 0.012583 B = 0.003492 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.679566 B = 8016.291043 C = 9798.355353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.062 0.938 4 C 0.121 3.879 5 N -0.703 5.703 6 C 0.550 3.450 7 O -0.574 6.574 8 C -0.112 4.112 9 C -0.085 4.085 10 C -0.077 4.077 11 C -0.167 4.167 12 C 0.514 3.486 13 F -0.179 7.179 14 F -0.177 7.177 15 F -0.174 7.174 16 C -0.072 4.072 17 C -0.066 4.066 18 N -0.732 5.732 19 C -0.236 4.236 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.965 5.965 23 Si 0.964 3.036 24 H -0.275 1.275 25 H -0.302 1.302 26 H -0.284 1.284 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.054 0.946 31 H 0.086 0.914 32 H 0.411 0.589 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.152 0.848 37 H 0.373 0.627 38 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.651 2.470 13.478 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.050 3.950 3 H 0.080 0.920 4 C -0.003 4.003 5 N -0.353 5.353 6 C 0.338 3.662 7 O -0.456 6.456 8 C -0.115 4.115 9 C -0.104 4.104 10 C -0.094 4.094 11 C -0.169 4.169 12 C 0.460 3.540 13 F -0.160 7.160 14 F -0.158 7.158 15 F -0.155 7.155 16 C -0.090 4.090 17 C -0.085 4.085 18 N -0.374 5.374 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.616 5.616 23 Si 0.794 3.206 24 H -0.201 1.201 25 H -0.229 1.229 26 H -0.211 1.211 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.249 0.751 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.185 0.815 36 H 0.170 0.830 37 H 0.205 0.795 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.232 2.324 13.997 18.096 hybrid contribution 0.395 -0.030 -1.640 1.687 sum 11.627 2.294 12.357 17.121 Atomic orbital electron populations 1.22241 0.96763 1.01192 1.01421 1.20696 0.93631 0.95726 0.84942 0.92004 1.21666 0.79100 1.00811 0.98714 1.45944 1.08529 1.57690 1.23176 1.18512 0.87663 0.77792 0.82269 1.90728 1.70490 1.49791 1.34569 1.20233 0.92522 1.01560 0.97173 1.21491 0.94293 0.97592 0.96992 1.21087 0.94074 0.96337 0.97949 1.20290 0.91152 1.05924 0.99485 1.18184 0.88322 0.73754 0.73719 1.93239 1.93396 1.47489 1.81900 1.93203 1.88601 1.55198 1.78796 1.93201 1.88500 1.96180 1.37614 1.21139 0.93826 0.96967 0.97087 1.21367 0.93574 0.95612 0.97928 1.42613 1.78378 1.10328 1.06048 1.19528 1.34973 0.94191 0.88116 0.90387 1.25397 1.03021 0.96582 1.00872 1.69797 1.52417 1.10053 1.29307 0.85363 0.77757 0.77435 0.80057 1.20145 1.22888 1.21060 0.90732 0.93668 0.93908 0.92721 0.89558 0.75087 0.83813 0.82519 0.81543 0.83004 0.79501 0.94220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16 2 C 0.16 5.43 3.05 44.99 0.14 5.57 16 3 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 4 C 0.12 3.78 5.23 86.38 0.45 4.24 16 5 N -0.70 -21.83 5.34 -465.96 -2.49 -24.32 16 6 C 0.55 17.30 7.77 86.79 0.67 17.97 16 7 O -0.57 -20.96 16.35 -3.88 -0.06 -21.02 16 8 C -0.11 -2.91 5.87 -20.09 -0.12 -3.03 16 9 C -0.09 -2.01 9.54 22.53 0.21 -1.79 16 10 C -0.08 -1.58 9.38 22.23 0.21 -1.37 16 11 C -0.17 -3.27 5.46 -19.81 -0.11 -3.37 16 12 C 0.51 9.71 3.36 71.24 0.24 9.95 16 13 F -0.18 -3.70 17.30 44.97 0.78 -2.92 16 14 F -0.18 -3.46 16.45 44.97 0.74 -2.72 16 15 F -0.17 -3.13 16.45 44.97 0.74 -2.39 16 16 C -0.07 -1.32 9.38 22.23 0.21 -1.11 16 17 C -0.07 -1.45 9.60 22.53 0.22 -1.24 16 18 N -0.73 -32.62 4.56 -322.94 -1.47 -34.09 16 19 C -0.24 -11.79 9.93 84.04 0.83 -10.95 16 20 H 0.08 3.72 7.83 -2.91 -0.02 3.70 16 21 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16 22 N -0.97 -55.37 13.06 21.65 0.28 -55.09 16 23 Si 0.96 43.30 29.55 68.60 2.03 45.33 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.41 12.76 6.17 -92.71 -0.57 12.19 16 33 H 0.14 3.38 6.41 -2.91 -0.02 3.36 16 34 H 0.16 2.73 7.59 -2.91 -0.02 2.70 16 35 H 0.17 2.12 7.59 -2.91 -0.02 2.10 16 36 H 0.15 3.17 7.65 -2.91 -0.02 3.15 16 37 H 0.37 18.43 7.80 -92.71 -0.72 17.70 16 38 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -61.09 342.09 4.48 -56.61 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.17 Total: 32.99 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 4.11 Total: 7.63 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -3.68 Total: -113.50 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.26 Total: -8.04 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -61.09 4.48 -56.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752913231.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.014 kcal (2) G-P(sol) polarization free energy of solvation -61.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds