Wall clock time and date at job start Tue Mar 31 2020 10:54:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08992 * 109.47370 * 2 1
4 4 C 1.53004 * 109.47195 * 120.00039 * 2 1 3
5 5 N 1.46499 * 109.47198 * 174.99817 * 4 2 1
6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 2
7 7 O 1.21553 * 120.00289 * 359.72074 * 6 5 4
8 8 C 1.47846 * 119.99557 * 179.72375 * 6 5 4
9 9 C 1.39575 * 120.14570 * 359.72055 * 8 6 5
10 10 C 1.37955 * 119.85022 * 179.78726 * 9 8 6
11 11 C 1.38362 * 120.14738 * 0.49095 * 10 9 8
12 12 C 1.50698 * 119.85279 * 179.76145 * 11 10 9
13 13 F 1.39901 * 109.47405 * 269.97290 * 12 11 10
14 14 F 1.39899 * 109.47497 * 29.98245 * 12 11 10
15 15 F 1.39906 * 109.47095 * 149.97868 * 12 11 10
16 16 C 1.38361 * 120.29120 * 359.74322 * 11 10 9
17 17 C 1.37957 * 120.14182 * 0.02562 * 16 11 10
18 18 N 1.46506 * 109.47091 * 239.99845 * 2 1 3
19 19 C 1.36929 * 119.99909 * 85.00050 * 18 2 1
20 20 H 1.08006 * 120.00094 * 0.02562 * 19 18 2
21 21 C 1.38816 * 120.00176 * 180.02562 * 19 18 2
22 22 N 1.31615 * 119.99668 * 0.02562 * 21 19 18
23 23 Si 1.86799 * 120.00011 * 180.02562 * 21 19 18
24 24 H 1.48496 * 109.47263 * 59.99982 * 23 21 19
25 25 H 1.48501 * 109.46944 * 180.02562 * 23 21 19
26 26 H 1.48508 * 109.47333 * 300.00103 * 23 21 19
27 27 H 1.09001 * 109.47386 * 300.00185 * 1 2 3
28 28 H 1.08998 * 109.47347 * 59.99643 * 1 2 3
29 29 H 1.08998 * 109.47557 * 180.02562 * 1 2 3
30 30 H 1.09009 * 109.46730 * 54.99604 * 4 2 1
31 31 H 1.08998 * 109.46846 * 295.00148 * 4 2 1
32 32 H 0.97001 * 119.99790 * 359.97438 * 5 4 2
33 33 H 1.08001 * 120.07522 * 0.02562 * 9 8 6
34 34 H 1.08007 * 119.92736 * 180.22839 * 10 9 8
35 35 H 1.07995 * 119.92745 * 180.02562 * 16 11 10
36 36 H 1.08008 * 120.06811 * 179.97438 * 17 16 11
37 37 H 0.97002 * 119.99781 * 265.00262 * 18 2 1
38 38 H 0.96996 * 119.99816 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2493
5 7 3.5000 -0.8264 1.1906
6 6 4.1725 -1.4338 2.1883
7 8 3.5680 -1.8898 3.1392
8 6 5.6454 -1.5453 2.1261
9 6 6.3420 -1.0279 1.0328
10 6 7.7168 -1.1314 0.9832
11 6 8.4042 -1.7555 2.0091
12 6 9.9055 -1.8696 1.9454
13 9 10.2557 -3.0605 1.3001
14 9 10.4261 -0.7832 1.2342
15 9 10.4285 -1.8712 3.2430
16 6 7.7193 -2.2748 3.0933
17 6 6.3449 -2.1737 3.1575
18 7 2.0183 -0.6907 -1.1962
19 6 2.1491 -0.0076 -2.3757
20 1 1.8926 1.0405 -2.4241
21 6 2.6113 -0.6621 -3.5093
22 7 2.9233 -1.9394 -3.4504
23 14 2.7903 0.2700 -5.1182
24 1 3.7464 1.3917 -4.9367
25 1 3.2980 -0.6488 -6.1686
26 1 1.4683 0.8079 -5.5285
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5139 -0.8899
29 1 -0.3634 -1.0276 0.0005
30 1 1.6052 -1.7199 1.2952
31 1 1.7516 -0.1583 2.1370
32 1 3.9823 -0.4629 0.4315
33 1 5.8063 -0.5441 0.2295
34 1 8.2574 -0.7282 0.1395
35 1 8.2617 -2.7604 3.8909
36 1 5.8114 -2.5800 4.0043
37 1 2.2490 -1.6319 -1.1526
38 1 3.2466 -2.3966 -4.2424
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001752913231.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:45
Heat of formation + Delta-G solvation = -171.625327 kcal
Electronic energy + Delta-G solvation = -25758.250427 eV
Core-core repulsion = 21378.084207 eV
Total energy + Delta-G solvation = -4380.166220 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 316.114 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-51.21851 -48.72612 -48.68439 -41.37645 -39.64605 -37.90253 -35.31076 -33.92006
-33.06209 -32.20808 -30.54920 -28.21675 -26.68558 -25.60506 -24.02290 -23.68297
-21.75412 -21.41641 -19.73504 -19.53334 -19.41333 -19.36185 -18.63874 -17.33757
-16.89830 -16.32186 -16.11925 -15.91437 -15.64876 -15.56485 -15.48581 -15.36704
-15.13402 -14.95746 -14.89026 -14.83171 -14.56574 -14.25804 -14.02758 -13.77259
-13.65631 -13.36414 -13.06128 -12.77888 -12.73409 -12.49769 -12.34991 -12.21899
-11.70504 -11.65101 -11.16077 -10.93408 -10.48456 -10.22422 -10.04013 -9.01667
-7.90124 -5.19286 -0.63971 0.14095 1.51961 1.53170 1.55880 1.57619
1.58946 2.12427 2.55539 2.59117 2.62052 2.94409 3.35257 3.43957
3.59055 3.68541 3.74948 3.89997 3.98717 4.08653 4.21380 4.39897
4.45360 4.64539 4.73893 4.78999 4.83596 4.95752 4.98222 5.07849
5.13903 5.26574 5.35212 5.52430 5.58367 5.58823 6.30178 6.47816
7.08842 7.38191 8.09879 8.34584 9.32117
Molecular weight = 316.11amu
Principal moments of inertia in cm(-1)
A = 0.012583 B = 0.003492 C = 0.002857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2224.679566 B = 8016.291043 C = 9798.355353
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.158 3.842
3 H 0.062 0.938
4 C 0.121 3.879
5 N -0.703 5.703
6 C 0.550 3.450
7 O -0.574 6.574
8 C -0.112 4.112
9 C -0.085 4.085
10 C -0.077 4.077
11 C -0.167 4.167
12 C 0.514 3.486
13 F -0.179 7.179
14 F -0.177 7.177
15 F -0.174 7.174
16 C -0.072 4.072
17 C -0.066 4.066
18 N -0.732 5.732
19 C -0.236 4.236
20 H 0.078 0.922
21 C -0.066 4.066
22 N -0.965 5.965
23 Si 0.964 3.036
24 H -0.275 1.275
25 H -0.302 1.302
26 H -0.284 1.284
27 H 0.074 0.926
28 H 0.044 0.956
29 H 0.042 0.958
30 H 0.054 0.946
31 H 0.086 0.914
32 H 0.411 0.589
33 H 0.144 0.856
34 H 0.157 0.843
35 H 0.167 0.833
36 H 0.152 0.848
37 H 0.373 0.627
38 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.651 2.470 13.478 17.986
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.050 3.950
3 H 0.080 0.920
4 C -0.003 4.003
5 N -0.353 5.353
6 C 0.338 3.662
7 O -0.456 6.456
8 C -0.115 4.115
9 C -0.104 4.104
10 C -0.094 4.094
11 C -0.169 4.169
12 C 0.460 3.540
13 F -0.160 7.160
14 F -0.158 7.158
15 F -0.155 7.155
16 C -0.090 4.090
17 C -0.085 4.085
18 N -0.374 5.374
19 C -0.368 4.368
20 H 0.096 0.904
21 C -0.259 4.259
22 N -0.616 5.616
23 Si 0.794 3.206
24 H -0.201 1.201
25 H -0.229 1.229
26 H -0.211 1.211
27 H 0.093 0.907
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.073 0.927
31 H 0.104 0.896
32 H 0.249 0.751
33 H 0.162 0.838
34 H 0.175 0.825
35 H 0.185 0.815
36 H 0.170 0.830
37 H 0.205 0.795
38 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 11.232 2.324 13.997 18.096
hybrid contribution 0.395 -0.030 -1.640 1.687
sum 11.627 2.294 12.357 17.121
Atomic orbital electron populations
1.22241 0.96763 1.01192 1.01421 1.20696 0.93631 0.95726 0.84942
0.92004 1.21666 0.79100 1.00811 0.98714 1.45944 1.08529 1.57690
1.23176 1.18512 0.87663 0.77792 0.82269 1.90728 1.70490 1.49791
1.34569 1.20233 0.92522 1.01560 0.97173 1.21491 0.94293 0.97592
0.96992 1.21087 0.94074 0.96337 0.97949 1.20290 0.91152 1.05924
0.99485 1.18184 0.88322 0.73754 0.73719 1.93239 1.93396 1.47489
1.81900 1.93203 1.88601 1.55198 1.78796 1.93201 1.88500 1.96180
1.37614 1.21139 0.93826 0.96967 0.97087 1.21367 0.93574 0.95612
0.97928 1.42613 1.78378 1.10328 1.06048 1.19528 1.34973 0.94191
0.88116 0.90387 1.25397 1.03021 0.96582 1.00872 1.69797 1.52417
1.10053 1.29307 0.85363 0.77757 0.77435 0.80057 1.20145 1.22888
1.21060 0.90732 0.93668 0.93908 0.92721 0.89558 0.75087 0.83813
0.82519 0.81543 0.83004 0.79501 0.94220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.89 9.49 71.98 0.68 -4.21 16
2 C 0.16 5.43 3.05 44.99 0.14 5.57 16
3 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16
4 C 0.12 3.78 5.23 86.38 0.45 4.24 16
5 N -0.70 -21.83 5.34 -465.96 -2.49 -24.32 16
6 C 0.55 17.30 7.77 86.79 0.67 17.97 16
7 O -0.57 -20.96 16.35 -3.88 -0.06 -21.02 16
8 C -0.11 -2.91 5.87 -20.09 -0.12 -3.03 16
9 C -0.09 -2.01 9.54 22.53 0.21 -1.79 16
10 C -0.08 -1.58 9.38 22.23 0.21 -1.37 16
11 C -0.17 -3.27 5.46 -19.81 -0.11 -3.37 16
12 C 0.51 9.71 3.36 71.24 0.24 9.95 16
13 F -0.18 -3.70 17.30 44.97 0.78 -2.92 16
14 F -0.18 -3.46 16.45 44.97 0.74 -2.72 16
15 F -0.17 -3.13 16.45 44.97 0.74 -2.39 16
16 C -0.07 -1.32 9.38 22.23 0.21 -1.11 16
17 C -0.07 -1.45 9.60 22.53 0.22 -1.24 16
18 N -0.73 -32.62 4.56 -322.94 -1.47 -34.09 16
19 C -0.24 -11.79 9.93 84.04 0.83 -10.95 16
20 H 0.08 3.72 7.83 -2.91 -0.02 3.70 16
21 C -0.07 -3.49 5.50 84.86 0.47 -3.03 16
22 N -0.97 -55.37 13.06 21.65 0.28 -55.09 16
23 Si 0.96 43.30 29.55 68.60 2.03 45.33 16
24 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16
25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16
26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16
27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
30 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16
31 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16
32 H 0.41 12.76 6.17 -92.71 -0.57 12.19 16
33 H 0.14 3.38 6.41 -2.91 -0.02 3.36 16
34 H 0.16 2.73 7.59 -2.91 -0.02 2.70 16
35 H 0.17 2.12 7.59 -2.91 -0.02 2.10 16
36 H 0.15 3.17 7.65 -2.91 -0.02 3.15 16
37 H 0.37 18.43 7.80 -92.71 -0.72 17.70 16
38 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16
Total: -1.00 -61.09 342.09 4.48 -56.61
By element:
Atomic # 1 Polarization: 33.16 SS G_CDS: -0.17 Total: 32.99 kcal
Atomic # 6 Polarization: 3.52 SS G_CDS: 4.11 Total: 7.63 kcal
Atomic # 7 Polarization: -109.82 SS G_CDS: -3.68 Total: -113.50 kcal
Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal
Atomic # 9 Polarization: -10.29 SS G_CDS: 2.26 Total: -8.04 kcal
Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal
Total: -61.09 4.48 -56.61 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001752913231.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -115.014 kcal
(2) G-P(sol) polarization free energy of solvation -61.095 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.109 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.484 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.611 kcal
(6) G-S(sol) free energy of system = (1) + (5) -171.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.58 seconds