Wall clock time and date at job start Tue Mar 31 2020 10:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47410 * 2 1 4 4 C 1.53000 * 109.47111 * 239.99388 * 2 1 3 5 5 N 1.46499 * 109.47223 * 184.99951 * 4 2 1 6 6 C 1.36933 * 119.99913 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00149 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99772 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00024 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47195 * 59.99741 * 10 8 6 12 12 H 1.48495 * 109.47442 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46938 * 300.00019 * 10 8 6 14 14 N 1.46500 * 109.47066 * 119.99699 * 2 1 3 15 15 C 1.34778 * 120.00219 * 275.00015 * 14 2 1 16 16 O 1.21638 * 119.99667 * 359.97438 * 15 14 2 17 17 C 1.47193 * 120.00384 * 179.72620 * 15 14 2 18 18 C 1.35891 * 120.49244 * 354.51728 * 17 15 14 19 19 O 1.33712 * 122.50499 * 180.02562 * 18 17 15 20 20 C 1.34507 * 122.85886 * 359.97438 * 19 18 17 21 21 O 1.21623 * 120.25975 * 180.02562 * 20 19 18 22 22 C 1.46870 * 119.47781 * 0.02562 * 20 19 18 23 23 C 1.39356 * 122.10618 * 179.97438 * 22 20 19 24 24 C 1.37837 * 119.48958 * 179.16415 * 23 22 20 25 25 C 1.38811 * 120.69031 * 0.83017 * 24 23 22 26 26 C 1.37925 * 120.69110 * 359.44261 * 25 24 23 27 27 C 1.39048 * 119.51939 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47093 * 300.00535 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00395 * 1 2 3 31 31 H 1.08997 * 109.47064 * 305.00730 * 4 2 1 32 32 H 1.09005 * 109.47138 * 65.00228 * 4 2 1 33 33 H 0.97002 * 119.99870 * 359.97438 * 5 4 2 34 34 H 0.97001 * 119.99667 * 180.02562 * 9 8 6 35 35 H 0.97003 * 120.00108 * 94.99693 * 14 2 1 36 36 H 1.08002 * 118.74317 * 359.97438 * 18 17 15 37 37 H 1.08001 * 120.25508 * 0.02562 * 23 22 20 38 38 H 1.07998 * 119.65586 * 180.27436 * 24 23 22 39 39 H 1.08005 * 119.64903 * 179.46081 * 25 24 23 40 40 H 1.07997 * 120.23259 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4381 -2.2071 7 1 3.6468 -1.8427 -3.0523 8 6 5.5672 -1.5382 -2.1512 9 7 6.2216 -1.0448 -1.1214 10 14 6.5001 -2.3719 -3.5383 11 1 6.2436 -1.6508 -4.8109 12 1 7.9548 -2.3481 -3.2410 13 1 6.0434 -3.7792 -3.6662 14 7 2.0183 -0.6905 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8582 1.1622 2.4116 17 6 2.6319 -0.7134 3.5606 18 6 2.8470 -2.0551 3.5422 19 8 3.2863 -2.7271 4.6115 20 6 3.5510 -2.1328 5.7888 21 8 3.9493 -2.7903 6.7313 22 6 3.3551 -0.6838 5.9272 23 6 3.6117 -0.0125 7.1211 24 6 3.4257 1.3518 7.1859 25 6 2.9702 2.0580 6.0810 26 6 2.7052 1.4109 4.8922 27 6 2.8978 0.0367 4.8024 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1370 33 1 3.9824 -0.4622 -0.4319 34 1 7.1884 -1.1144 -1.0826 35 1 2.2490 -1.6317 1.1527 36 1 2.6551 -2.5994 2.6293 37 1 3.9669 -0.5548 7.9849 38 1 3.6280 1.8754 8.1085 39 1 2.8221 3.1254 6.1531 40 1 2.3507 1.9676 4.0374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754237866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:25 Heat of formation + Delta-G solvation = -49.082590 kcal Electronic energy + Delta-G solvation = -25849.648309 eV Core-core repulsion = 22016.652681 eV Total energy + Delta-G solvation = -3832.995628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98103 -39.80821 -38.82794 -38.01754 -36.30660 -33.90893 -33.52093 -31.63678 -31.43558 -30.30103 -29.34539 -25.83212 -25.45568 -24.67645 -23.15942 -22.53776 -21.33329 -20.58414 -19.05046 -18.83954 -18.09328 -17.17367 -16.92569 -16.44129 -16.17590 -15.63456 -15.10524 -14.91978 -14.70277 -14.53886 -14.15591 -13.80181 -13.50934 -13.37901 -13.30376 -13.27083 -12.88219 -12.45089 -12.31037 -12.22174 -12.09282 -11.77074 -11.55992 -10.98617 -10.86616 -10.59339 -10.51260 -10.27745 -10.14522 -9.81600 -9.67230 -9.31767 -9.01163 -8.93002 -8.36563 -7.04987 -5.85141 -3.15828 0.29077 0.48029 1.47293 2.09782 2.31905 3.07282 3.20048 3.38807 3.43787 3.44992 3.67060 3.72255 4.11843 4.49994 4.53562 4.58388 4.78500 4.96811 5.01811 5.13278 5.21341 5.33985 5.42089 5.45643 5.48249 5.55269 5.82841 5.89547 5.97674 5.99204 6.08279 6.19056 6.23892 6.29479 6.36345 6.56636 6.65768 6.79426 6.87845 7.12516 7.59189 7.61171 8.26607 8.32499 9.44454 9.98797 10.33894 11.36851 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.003699 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.092135 B = 7567.812992 C = 8494.078838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.134 3.866 3 H 0.091 0.909 4 C 0.143 3.857 5 N -0.732 5.732 6 C -0.247 4.247 7 H 0.071 0.929 8 C -0.009 4.009 9 N -0.930 5.930 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.285 1.285 14 N -0.705 5.705 15 C 0.580 3.420 16 O -0.536 6.536 17 C -0.223 4.223 18 C 0.142 3.858 19 O -0.264 6.264 20 C 0.525 3.475 21 O -0.450 6.450 22 C -0.185 4.185 23 C -0.048 4.048 24 C -0.135 4.135 25 C -0.080 4.080 26 C -0.113 4.113 27 C 0.024 3.976 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.036 0.964 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.401 0.599 36 H 0.200 0.800 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.808 2.792 13.703 17.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.030 3.970 3 H 0.109 0.891 4 C 0.015 3.985 5 N -0.378 5.378 6 C -0.378 4.378 7 H 0.089 0.911 8 C -0.206 4.206 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 N -0.356 5.356 15 C 0.367 3.633 16 O -0.415 6.415 17 C -0.228 4.228 18 C 0.077 3.923 19 O -0.174 6.174 20 C 0.371 3.629 21 O -0.335 6.335 22 C -0.187 4.187 23 C -0.066 4.066 24 C -0.153 4.153 25 C -0.099 4.099 26 C -0.130 4.130 27 C 0.023 3.977 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.053 0.947 33 H 0.220 0.780 34 H 0.067 0.933 35 H 0.236 0.764 36 H 0.217 0.783 37 H 0.157 0.843 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -10.733 3.014 14.022 17.914 hybrid contribution 0.975 -0.700 -0.645 1.363 sum -9.758 2.315 13.377 16.719 Atomic orbital electron populations 1.22108 0.95184 1.02025 1.02369 1.21325 0.93501 0.98145 0.84030 0.89093 1.21004 0.86920 0.97045 0.93523 1.42356 0.99672 1.70393 1.25345 1.19159 0.89428 1.29930 0.99323 0.91133 1.24750 0.96439 1.01346 0.98024 1.69647 1.07444 1.50496 1.30228 0.86269 0.79018 0.79251 0.81614 1.21221 1.21666 1.21196 1.45957 1.66220 1.14178 1.09287 1.17340 0.77430 0.86356 0.82169 1.90609 1.51273 1.15189 1.84421 1.20669 1.12522 0.93247 0.96328 1.23819 0.88932 0.91761 0.87814 1.83286 1.69653 1.44569 1.19862 1.20501 0.75298 0.87213 0.79886 1.90921 1.41932 1.67461 1.33163 1.20020 1.09752 0.92446 0.96470 1.20998 0.95409 0.94333 0.95887 1.21256 1.00890 0.93735 0.99374 1.21554 0.95247 1.00569 0.92481 1.22075 0.98031 0.93155 0.99738 1.18615 0.95047 0.94127 0.89920 0.92480 0.92291 0.91436 0.95676 0.94654 0.78023 0.93334 0.76352 0.78344 0.84277 0.85003 0.84967 0.81150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.48 37.16 0.35 -1.53 16 2 C 0.13 2.00 2.73 -67.93 -0.19 1.82 16 3 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 4 C 0.14 2.54 5.82 -4.04 -0.02 2.52 16 5 N -0.73 -17.07 5.43 -59.91 -0.33 -17.39 16 6 C -0.25 -6.54 9.99 -15.06 -0.15 -6.69 16 7 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 9 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 10 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 N -0.71 -9.89 4.46 -54.95 -0.25 -10.14 16 15 C 0.58 8.60 7.70 -12.62 -0.10 8.50 16 16 O -0.54 -9.03 13.33 5.24 0.07 -8.96 16 17 C -0.22 -3.00 5.99 -103.33 -0.62 -3.62 16 18 C 0.14 1.66 10.83 29.89 0.32 1.98 16 19 O -0.26 -3.51 9.75 -17.91 -0.17 -3.68 16 20 C 0.52 7.52 8.18 34.22 0.28 7.80 16 21 O -0.45 -7.28 17.39 -19.36 -0.34 -7.61 16 22 C -0.19 -2.45 5.89 -104.87 -0.62 -3.07 16 23 C -0.05 -0.53 9.66 -39.31 -0.38 -0.91 16 24 C -0.13 -1.27 10.01 -39.52 -0.40 -1.66 16 25 C -0.08 -0.82 10.02 -39.48 -0.40 -1.21 16 26 C -0.11 -1.45 9.34 -39.40 -0.37 -1.82 16 27 C 0.02 0.33 5.90 -104.70 -0.62 -0.29 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.39 9.62 7.33 -40.82 -0.30 9.32 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.40 5.06 6.62 -40.82 -0.27 4.79 16 36 H 0.20 1.71 6.29 -52.49 -0.33 1.38 16 37 H 0.14 1.36 7.80 -52.49 -0.41 0.95 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 39 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 40 H 0.17 2.40 5.16 -52.49 -0.27 2.13 16 LS Contribution 345.08 15.07 5.20 5.20 Total: -1.00 -32.49 345.08 -7.58 -40.07 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -4.48 Total: 10.86 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -2.99 Total: 1.46 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.15 Total: -54.00 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.44 Total: -20.25 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.49 -7.58 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754237866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.017 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds