Wall clock time and date at job start Tue Mar 31 2020 10:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47410 * 2 1 4 4 C 1.53000 * 109.47111 * 239.99388 * 2 1 3 5 5 N 1.46499 * 109.47223 * 184.99951 * 4 2 1 6 6 C 1.36933 * 119.99913 * 180.02562 * 5 4 2 7 7 H 1.07998 * 120.00149 * 0.02562 * 6 5 4 8 8 C 1.38816 * 119.99852 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99772 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00024 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47195 * 59.99741 * 10 8 6 12 12 H 1.48495 * 109.47442 * 179.97438 * 10 8 6 13 13 H 1.48501 * 109.46938 * 300.00019 * 10 8 6 14 14 N 1.46500 * 109.47066 * 119.99699 * 2 1 3 15 15 C 1.34778 * 120.00219 * 275.00015 * 14 2 1 16 16 O 1.21638 * 119.99667 * 359.97438 * 15 14 2 17 17 C 1.47193 * 120.00384 * 179.72620 * 15 14 2 18 18 C 1.35891 * 120.49244 * 354.51728 * 17 15 14 19 19 O 1.33712 * 122.50499 * 180.02562 * 18 17 15 20 20 C 1.34507 * 122.85886 * 359.97438 * 19 18 17 21 21 O 1.21623 * 120.25975 * 180.02562 * 20 19 18 22 22 C 1.46870 * 119.47781 * 0.02562 * 20 19 18 23 23 C 1.39356 * 122.10618 * 179.97438 * 22 20 19 24 24 C 1.37837 * 119.48958 * 179.16415 * 23 22 20 25 25 C 1.38811 * 120.69031 * 0.83017 * 24 23 22 26 26 C 1.37925 * 120.69110 * 359.44261 * 25 24 23 27 27 C 1.39048 * 119.51939 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47093 * 300.00535 * 1 2 3 30 30 H 1.08998 * 109.47132 * 60.00395 * 1 2 3 31 31 H 1.08997 * 109.47064 * 305.00730 * 4 2 1 32 32 H 1.09005 * 109.47138 * 65.00228 * 4 2 1 33 33 H 0.97002 * 119.99870 * 359.97438 * 5 4 2 34 34 H 0.97001 * 119.99667 * 180.02562 * 9 8 6 35 35 H 0.97003 * 120.00108 * 94.99693 * 14 2 1 36 36 H 1.08002 * 118.74317 * 359.97438 * 18 17 15 37 37 H 1.08001 * 120.25508 * 0.02562 * 23 22 20 38 38 H 1.07998 * 119.65586 * 180.27436 * 24 23 22 39 39 H 1.08005 * 119.64903 * 179.46081 * 25 24 23 40 40 H 1.07997 * 120.23259 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1838 -1.4381 -2.2071 7 1 3.6468 -1.8427 -3.0523 8 6 5.5672 -1.5382 -2.1512 9 7 6.2216 -1.0448 -1.1214 10 14 6.5001 -2.3719 -3.5383 11 1 6.2436 -1.6508 -4.8109 12 1 7.9548 -2.3481 -3.2410 13 1 6.0434 -3.7792 -3.6662 14 7 2.0183 -0.6905 1.1962 15 6 2.1470 -0.0182 2.3572 16 8 1.8582 1.1622 2.4116 17 6 2.6319 -0.7134 3.5606 18 6 2.8470 -2.0551 3.5422 19 8 3.2863 -2.7271 4.6115 20 6 3.5510 -2.1328 5.7888 21 8 3.9493 -2.7903 6.7313 22 6 3.3551 -0.6838 5.9272 23 6 3.6117 -0.0125 7.1211 24 6 3.4257 1.3518 7.1859 25 6 2.9702 2.0580 6.0810 26 6 2.7052 1.4109 4.8922 27 6 2.8978 0.0367 4.8024 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6053 -1.7199 -1.2950 32 1 1.7517 -0.1585 -2.1370 33 1 3.9824 -0.4622 -0.4319 34 1 7.1884 -1.1144 -1.0826 35 1 2.2490 -1.6317 1.1527 36 1 2.6551 -2.5994 2.6293 37 1 3.9669 -0.5548 7.9849 38 1 3.6280 1.8754 8.1085 39 1 2.8221 3.1254 6.1531 40 1 2.3507 1.9676 4.0374 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754237866.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:24 Heat of formation + Delta-G solvation = -69.249843 kcal Electronic energy + Delta-G solvation = -25850.522827 eV Core-core repulsion = 22016.652681 eV Total energy + Delta-G solvation = -3833.870146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.02148 -40.97979 -39.76487 -39.14428 -37.68384 -35.51469 -34.66159 -33.06291 -32.38255 -31.76725 -30.40425 -27.39909 -26.54924 -25.63183 -24.59708 -23.85617 -22.46186 -21.80335 -20.04987 -19.89534 -19.30298 -18.88895 -18.01126 -17.57126 -17.33738 -16.71476 -16.52647 -16.18948 -15.85385 -15.61244 -15.33936 -15.21084 -15.13865 -14.55747 -14.34775 -14.28517 -13.93482 -13.85609 -13.60117 -13.47065 -13.04350 -12.98453 -12.73769 -12.67548 -12.47864 -12.18578 -11.87470 -11.69292 -11.56883 -11.24276 -10.96616 -10.80022 -10.23486 -10.13972 -9.32211 -8.99262 -7.93230 -5.22175 -0.64628 -0.51096 0.51997 1.07073 1.29267 1.50284 1.51756 1.57932 1.95142 2.11457 2.57536 2.67225 2.76903 3.21373 3.41733 3.52899 3.63935 3.81425 3.93315 4.06222 4.17581 4.19610 4.27606 4.35468 4.46356 4.55529 4.63230 4.81408 4.89830 4.96447 4.98782 5.09136 5.16833 5.31775 5.35443 5.38847 5.53139 5.56786 5.78603 5.82950 6.05119 6.27527 6.45624 7.12276 7.35776 8.09860 8.32511 9.29314 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.013298 B = 0.003699 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.092135 B = 7567.812992 C = 8494.078838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.142 3.858 3 H 0.066 0.934 4 C 0.143 3.857 5 N -0.744 5.744 6 C -0.243 4.243 7 H 0.080 0.920 8 C -0.070 4.070 9 N -0.968 5.968 10 Si 0.969 3.031 11 H -0.281 1.281 12 H -0.301 1.301 13 H -0.275 1.275 14 N -0.701 5.701 15 C 0.580 3.420 16 O -0.560 6.560 17 C -0.239 4.239 18 C 0.156 3.844 19 O -0.268 6.268 20 C 0.522 3.478 21 O -0.476 6.476 22 C -0.202 4.202 23 C -0.051 4.051 24 C -0.123 4.123 25 C -0.071 4.071 26 C -0.134 4.134 27 C 0.006 3.994 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.374 0.626 34 H 0.249 0.751 35 H 0.408 0.592 36 H 0.229 0.771 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 2.758 13.900 18.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.038 3.962 3 H 0.084 0.916 4 C 0.017 3.983 5 N -0.388 5.388 6 C -0.375 4.375 7 H 0.098 0.902 8 C -0.263 4.263 9 N -0.618 5.618 10 Si 0.798 3.202 11 H -0.207 1.207 12 H -0.228 1.228 13 H -0.201 1.201 14 N -0.353 5.353 15 C 0.368 3.632 16 O -0.441 6.441 17 C -0.244 4.244 18 C 0.090 3.910 19 O -0.177 6.177 20 C 0.371 3.629 21 O -0.364 6.364 22 C -0.204 4.204 23 C -0.069 4.069 24 C -0.141 4.141 25 C -0.089 4.089 26 C -0.152 4.152 27 C 0.005 3.995 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.207 0.793 34 H 0.058 0.942 35 H 0.245 0.755 36 H 0.245 0.755 37 H 0.169 0.831 38 H 0.188 0.812 39 H 0.180 0.820 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.834 2.963 14.185 18.709 hybrid contribution 1.216 -0.617 -0.702 1.533 sum -10.618 2.346 13.483 17.322 Atomic orbital electron populations 1.22016 0.92367 1.03338 1.02845 1.21166 0.95466 0.96381 0.83211 0.91575 1.21174 0.83895 0.98283 0.94967 1.42540 1.01922 1.69979 1.24314 1.19590 0.89789 1.28356 0.99757 0.90224 1.25485 0.97561 1.03000 1.00262 1.69807 1.06987 1.52769 1.32262 0.85285 0.77044 0.78743 0.79105 1.20695 1.22783 1.20114 1.45893 1.66094 1.14437 1.08866 1.17499 0.77003 0.86102 0.82572 1.90601 1.52382 1.16241 1.84872 1.20620 1.13791 0.93951 0.96035 1.24253 0.87292 0.91486 0.87922 1.83277 1.69522 1.44864 1.20028 1.20731 0.74723 0.87679 0.79795 1.90893 1.43377 1.68051 1.34049 1.20074 1.11196 0.91756 0.97366 1.21316 0.94829 0.95317 0.95466 1.21667 0.98964 0.92986 1.00446 1.21923 0.93398 1.02058 0.91472 1.22055 0.99545 0.92991 1.00603 1.18767 0.95883 0.94706 0.90185 0.90707 0.92661 0.90120 0.93752 0.94293 0.79341 0.94222 0.75524 0.75471 0.83053 0.81159 0.82006 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.48 71.98 0.68 -2.54 16 2 C 0.14 4.13 2.73 44.99 0.12 4.25 16 3 H 0.07 2.27 7.58 -2.39 -0.02 2.25 16 4 C 0.14 4.87 5.82 86.38 0.50 5.38 16 5 N -0.74 -34.31 5.43 -343.45 -1.87 -36.18 16 6 C -0.24 -12.64 9.99 84.04 0.84 -11.80 16 7 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 8 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 9 N -0.97 -57.35 13.06 21.65 0.28 -57.07 16 10 Si 0.97 44.47 29.55 68.60 2.03 46.50 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 13 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 14 N -0.70 -19.33 4.46 -446.01 -1.99 -21.32 16 15 C 0.58 17.39 7.70 86.60 0.67 18.06 16 16 O -0.56 -19.37 13.33 -4.15 -0.06 -19.42 16 17 C -0.24 -6.51 5.99 -19.03 -0.11 -6.62 16 18 C 0.16 3.58 10.83 67.27 0.73 4.31 16 19 O -0.27 -7.11 9.75 24.62 0.24 -6.87 16 20 C 0.52 15.14 8.18 70.08 0.57 15.71 16 21 O -0.48 -15.59 17.39 19.44 0.34 -15.26 16 22 C -0.20 -5.33 5.89 -20.02 -0.12 -5.45 16 23 C -0.05 -1.07 9.66 22.44 0.22 -0.85 16 24 C -0.12 -1.99 10.01 22.31 0.22 -1.77 16 25 C -0.07 -1.31 10.02 22.33 0.22 -1.08 16 26 C -0.13 -3.46 9.34 22.39 0.21 -3.25 16 27 C 0.01 0.15 5.90 -19.92 -0.12 0.04 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.37 18.86 7.33 -92.71 -0.68 18.18 16 34 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.41 9.88 6.62 -92.71 -0.61 9.26 16 36 H 0.23 3.64 6.29 -2.91 -0.02 3.63 16 37 H 0.15 2.74 7.80 -2.91 -0.02 2.71 16 38 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 39 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.16 4.50 5.16 -2.91 -0.02 4.48 16 Total: -1.00 -70.79 345.08 3.90 -66.89 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.18 Total: 31.76 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 5.11 Total: 10.97 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -3.57 Total: -114.57 kcal Atomic # 8 Polarization: -42.08 SS G_CDS: 0.52 Total: -41.55 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -70.79 3.90 -66.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754237866.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.356 kcal (2) G-P(sol) polarization free energy of solvation -70.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds