Wall clock time and date at job start Tue Mar 31 2020 10:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52988 * 109.47236 * 2 1 4 4 O 1.42899 * 109.46776 * 239.99831 * 2 1 3 5 5 C 1.50700 * 109.47025 * 120.00300 * 2 1 3 6 6 C 1.38359 * 119.93491 * 329.99655 * 5 2 1 7 7 C 1.38316 * 120.25610 * 180.02562 * 6 5 2 8 8 C 1.38027 * 120.12665 * 0.02562 * 7 6 5 9 9 C 1.39379 * 119.86930 * 359.97438 * 8 7 6 10 10 C 1.48268 * 120.12852 * 179.97438 * 9 8 7 11 11 C 1.39300 * 120.14038 * 130.02236 * 10 9 8 12 12 C 1.37963 * 119.97269 * 179.97438 * 11 10 9 13 13 C 1.38677 * 120.24663 * 359.97438 * 12 11 10 14 14 F 1.35098 * 119.86452 * 180.02562 * 13 12 11 15 15 C 1.38336 * 120.27132 * 359.79114 * 13 12 11 16 16 C 1.38706 * 120.02362 * 0.46050 * 15 13 12 17 17 O 1.35664 * 120.11857 * 179.79207 * 16 15 13 18 18 C 1.34810 * 117.00459 * 5.60159 * 17 16 15 19 19 H 1.07997 * 119.99715 * 354.92947 * 18 17 16 20 20 C 1.38649 * 120.00088 * 174.65268 * 18 17 16 21 21 N 1.31563 * 119.99571 * 180.27461 * 20 18 17 22 22 Si 1.86797 * 119.99942 * 0.27777 * 20 18 17 23 23 H 1.48494 * 109.47137 * 90.00081 * 22 20 18 24 24 H 1.48503 * 109.46783 * 210.00100 * 22 20 18 25 25 H 1.48497 * 109.46984 * 329.99567 * 22 20 18 26 26 C 1.37978 * 119.93632 * 150.23086 * 5 2 1 27 27 H 1.08998 * 109.46977 * 300.00157 * 1 2 3 28 28 H 1.08996 * 109.47419 * 59.99701 * 1 2 3 29 29 H 1.09001 * 109.47645 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47445 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47462 * 300.00226 * 3 2 1 32 32 H 1.08998 * 109.47266 * 60.00019 * 3 2 1 33 33 H 0.96703 * 114.00334 * 300.00586 * 4 2 1 34 34 H 1.07995 * 119.87471 * 0.02562 * 6 5 2 35 35 H 1.07996 * 119.93361 * 179.97438 * 7 6 5 36 36 H 1.07993 * 120.06311 * 179.97438 * 8 7 6 37 37 H 1.08004 * 120.01205 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.87877 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.99006 * 180.26210 * 15 13 12 40 40 H 0.97004 * 119.99330 * 179.97438 * 21 20 18 41 41 H 1.08000 * 120.06380 * 359.97438 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0323 -0.7105 1.2304 6 6 1.2835 -0.6898 2.3937 7 6 1.7384 -1.3392 3.5270 8 6 2.9436 -2.0116 3.5034 9 6 3.7022 -2.0358 2.3344 10 6 4.9979 -2.7559 2.3028 11 6 5.2697 -3.6622 1.2805 12 6 6.4767 -4.3299 1.2542 13 6 7.4227 -4.1022 2.2423 14 9 8.6023 -4.7599 2.2088 15 6 7.1653 -3.2008 3.2596 16 6 5.9535 -2.5272 3.3000 17 8 5.6974 -1.6459 4.2991 18 6 6.7043 -1.3824 5.1559 19 1 7.6346 -1.9256 5.0792 20 6 6.5476 -0.4102 6.1319 21 7 7.5322 -0.1494 6.9646 22 14 4.9385 0.5292 6.2645 23 1 4.0203 -0.1892 7.1843 24 1 5.2028 1.8915 6.7932 25 1 4.3133 0.6321 4.9215 26 6 3.2404 -1.3762 1.1962 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.7208 -1.5953 -1.2329 34 1 0.3401 -0.1646 2.4169 35 1 1.1499 -1.3194 4.4323 36 1 3.2980 -2.5180 4.3890 37 1 4.5358 -3.8421 0.5088 38 1 6.6857 -5.0326 0.4610 39 1 7.9070 -3.0238 4.0245 40 1 7.4227 0.5310 7.6472 41 1 3.8256 -1.3888 0.2886 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240407709.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:32 Heat of formation + Delta-G solvation = -96.238199 kcal Electronic energy + Delta-G solvation = -26128.086945 eV Core-core repulsion = 22273.126535 eV Total energy + Delta-G solvation = -3854.960410 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.92967 -41.35901 -40.45722 -38.46816 -37.80561 -34.55995 -34.04503 -32.81664 -31.21791 -31.01859 -29.45092 -28.16163 -27.36609 -24.49686 -24.15851 -23.10272 -22.48405 -20.95438 -20.03853 -19.48505 -18.45324 -17.45538 -17.23535 -16.97952 -16.69617 -16.56660 -16.05532 -15.91494 -15.70888 -15.59434 -15.29218 -14.98579 -14.92970 -14.65203 -14.28479 -13.99061 -13.70835 -13.35341 -13.30277 -13.13996 -13.01546 -12.95095 -12.65305 -12.56243 -12.42314 -12.36250 -12.18182 -11.98197 -11.59019 -11.56980 -10.98761 -10.92809 -10.15470 -9.69803 -9.58078 -8.94529 -8.58136 -6.31131 -0.10846 0.42359 0.47482 0.67070 1.26345 1.30257 1.48102 2.21562 2.52111 2.81211 2.83107 3.03539 3.30275 3.35136 3.62977 3.73784 3.92165 4.04069 4.13416 4.17009 4.20476 4.29444 4.33262 4.47031 4.64932 4.71649 4.77403 4.85072 4.91740 4.96912 4.99302 5.11762 5.13912 5.19296 5.25072 5.25809 5.34345 5.34973 5.55440 5.58952 5.63481 5.75079 5.80139 6.03953 6.11059 6.75303 6.89170 7.44003 8.53015 Molecular weight = 316.13amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.005565 C = 0.003939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.271860 B = 5030.122577 C = 7107.308246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.174 3.826 3 C -0.140 4.140 4 O -0.567 6.567 5 C -0.120 4.120 6 C -0.113 4.113 7 C -0.128 4.128 8 C -0.116 4.116 9 C -0.037 4.037 10 C -0.133 4.133 11 C -0.024 4.024 12 C -0.208 4.208 13 C 0.132 3.868 14 F -0.147 7.147 15 C -0.279 4.279 16 C 0.164 3.836 17 O -0.214 6.214 18 C -0.403 4.403 19 H 0.079 0.921 20 C 0.020 3.980 21 N -0.916 5.916 22 Si 0.960 3.040 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.098 4.098 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.390 0.610 34 H 0.153 0.847 35 H 0.138 0.862 36 H 0.101 0.899 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.119 0.881 40 H 0.286 0.714 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.506 -1.841 -14.527 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.134 3.866 3 C -0.197 4.197 4 O -0.375 6.375 5 C -0.120 4.120 6 C -0.131 4.131 7 C -0.146 4.146 8 C -0.134 4.134 9 C -0.037 4.037 10 C -0.134 4.134 11 C -0.042 4.042 12 C -0.227 4.227 13 C 0.112 3.888 14 F -0.126 7.126 15 C -0.299 4.299 16 C 0.113 3.887 17 O -0.119 6.119 18 C -0.479 4.479 19 H 0.097 0.903 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.781 3.219 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.181 1.181 26 C -0.116 4.116 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.239 0.761 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.119 0.881 37 H 0.189 0.811 38 H 0.183 0.817 39 H 0.136 0.864 40 H 0.096 0.904 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.299 -1.032 -14.390 21.767 hybrid contribution 0.766 -0.417 1.264 1.535 sum -15.533 -1.448 -13.126 20.388 Atomic orbital electron populations 1.22490 0.93125 1.03532 1.03670 1.19972 0.93806 0.91705 0.81145 1.21809 1.01203 0.93451 1.03256 1.86521 1.77778 1.30196 1.42991 1.20632 0.94997 0.99272 0.97093 1.21365 1.00665 0.99276 0.91755 1.21304 0.95844 0.97880 0.99585 1.21321 0.95279 0.99824 0.97024 1.18614 0.92371 0.98172 0.94504 1.18329 0.94264 1.04269 0.96567 1.21061 0.96046 0.91504 0.95560 1.21045 0.94116 1.06688 1.00883 1.17680 0.82127 0.92749 0.96212 1.91436 1.45588 1.79196 1.96345 1.21088 1.00552 1.04748 1.03526 1.19218 0.92541 0.89121 0.87867 1.83580 1.38133 1.54931 1.35293 1.20702 0.94569 1.22087 1.10573 0.90314 1.25213 1.01836 0.96730 0.94231 1.69730 1.33410 1.33511 1.18931 0.85361 0.78673 0.77987 0.79847 1.18480 1.19530 1.18052 1.21078 0.96062 0.97036 0.97417 0.90301 0.90823 0.91215 0.93689 0.90490 0.90373 0.76097 0.82985 0.84453 0.88083 0.81078 0.81669 0.86352 0.90395 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.12 71.98 0.58 -1.66 16 2 C 0.17 3.30 1.23 -11.54 -0.01 3.29 16 3 C -0.14 -2.80 8.82 71.98 0.64 -2.17 16 4 O -0.57 -10.81 11.97 -148.98 -1.78 -12.60 16 5 C -0.12 -2.87 4.80 -19.90 -0.10 -2.97 16 6 C -0.11 -2.64 9.14 22.32 0.20 -2.43 16 7 C -0.13 -3.63 10.03 22.24 0.22 -3.41 16 8 C -0.12 -4.09 8.78 22.49 0.20 -3.89 16 9 C -0.04 -1.27 5.27 -20.05 -0.11 -1.37 16 10 C -0.13 -4.97 5.49 -19.93 -0.11 -5.07 16 11 C -0.02 -0.70 9.51 22.46 0.21 -0.49 16 12 C -0.21 -6.21 10.01 22.31 0.22 -5.99 16 13 C 0.13 4.98 7.29 22.40 0.16 5.14 16 14 F -0.15 -5.45 17.26 44.97 0.78 -4.68 16 15 C -0.28 -12.67 9.14 22.41 0.20 -12.47 16 16 C 0.16 7.56 6.56 22.81 0.15 7.70 16 17 O -0.21 -11.22 6.93 -21.58 -0.15 -11.37 16 18 C -0.40 -23.45 9.94 67.92 0.68 -22.77 16 19 H 0.08 4.87 5.44 -2.91 -0.02 4.86 16 20 C 0.02 1.13 5.49 84.83 0.47 1.59 16 21 N -0.92 -54.39 13.96 21.61 0.30 -54.08 16 22 Si 0.96 44.68 28.62 68.60 1.96 46.64 16 23 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 25 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 26 C -0.10 -2.82 8.81 22.49 0.20 -2.62 16 27 H 0.08 0.90 6.50 -2.39 -0.02 0.88 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.39 4.84 9.04 -74.06 -0.67 4.17 16 34 H 0.15 2.51 6.15 -2.91 -0.02 2.49 16 35 H 0.14 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.10 3.94 7.69 -2.91 -0.02 3.92 16 37 H 0.17 3.52 8.04 -2.91 -0.02 3.50 16 38 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.12 5.98 5.64 -2.91 -0.02 5.96 16 40 H 0.29 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.13 3.58 7.47 -2.91 -0.02 3.56 16 Total: -1.00 -67.88 349.61 5.33 -62.55 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.40 Total: 23.12 kcal Atomic # 6 Polarization: -53.40 SS G_CDS: 3.81 Total: -49.58 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.30 Total: -54.08 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -1.93 Total: -23.97 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.78 Total: -4.68 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.96 Total: 46.64 kcal Total: -67.88 5.33 -62.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240407709.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.685 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds